Wall clock time and date at job start Wed Apr 1 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47139 * 2 1 4 4 C 1.50700 * 109.46847 * 119.99947 * 2 1 3 5 5 C 1.35369 * 126.38472 * 324.96911 * 4 2 1 6 6 C 1.41509 * 105.50187 * 180.02562 * 5 4 2 7 7 C 1.47705 * 126.51775 * 180.02562 * 6 5 4 8 8 O 1.21576 * 119.99886 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00218 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00358 * 180.02562 * 9 7 6 11 11 C 1.53144 * 109.43588 * 205.00198 * 10 9 7 12 12 C 1.53705 * 108.87613 * 186.08567 * 11 10 9 13 13 H 1.08998 * 112.58319 * 187.93011 * 12 11 10 14 14 C 1.54223 * 107.72188 * 312.05760 * 12 11 10 15 15 C 1.54317 * 104.78870 * 88.98263 * 14 12 11 16 16 C 1.54609 * 104.74961 * 359.82002 * 15 14 12 17 17 H 1.09001 * 112.18992 * 146.80291 * 16 15 14 18 18 C 1.53702 * 108.37375 * 271.11279 * 16 15 14 19 19 N 1.48290 * 107.27703 * 64.00539 * 12 11 10 20 20 C 1.36943 * 128.20734 * 107.43775 * 19 12 11 21 21 H 1.07997 * 119.99395 * 164.68860 * 20 19 12 22 22 C 1.38803 * 119.99985 * 344.69061 * 20 19 12 23 23 N 1.31623 * 120.00162 * 350.76583 * 22 20 19 24 24 Si 1.86805 * 120.00130 * 170.76733 * 22 20 19 25 25 H 1.48492 * 109.47438 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46551 * 299.99934 * 24 22 20 27 27 H 1.48495 * 109.47093 * 59.99499 * 24 22 20 28 28 N 1.31811 * 106.96128 * 0.26535 * 6 5 4 29 29 N 1.28470 * 110.07431 * 359.55931 * 28 6 5 30 30 C 1.46494 * 124.88379 * 180.16243 * 29 28 6 31 31 H 1.09007 * 109.46931 * 300.00303 * 1 2 3 32 32 H 1.09003 * 109.46964 * 60.00192 * 1 2 3 33 33 H 1.08992 * 109.47567 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46938 * 239.99508 * 2 1 3 35 35 H 1.09002 * 109.47309 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.47036 * 299.99764 * 3 2 1 37 37 H 1.08997 * 109.47607 * 59.99918 * 3 2 1 38 38 H 1.07995 * 127.25019 * 0.02811 * 5 4 2 39 39 H 0.97001 * 119.99583 * 359.97438 * 9 7 6 40 40 H 1.09006 * 109.43152 * 324.91330 * 10 9 7 41 41 H 1.08998 * 109.57251 * 66.26369 * 11 10 9 42 42 H 1.09002 * 109.56874 * 305.90311 * 11 10 9 43 43 H 1.08998 * 110.51310 * 330.07571 * 14 12 11 44 44 H 1.09008 * 110.30954 * 207.78225 * 14 12 11 45 45 H 1.08997 * 110.37853 * 241.00512 * 15 14 12 46 46 H 1.08993 * 110.38315 * 118.64166 * 15 14 12 47 47 H 1.08998 * 109.57151 * 167.84374 * 18 16 15 48 48 H 1.09005 * 109.56516 * 288.20626 * 18 16 15 49 49 H 0.97006 * 119.99704 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.47170 * 270.33293 * 30 29 28 51 51 H 1.09004 * 109.47486 * 30.32945 * 30 29 28 52 52 H 1.08997 * 109.47324 * 150.33332 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4586 -0.6959 2.4565 6 6 2.2890 -1.5006 3.2722 7 6 2.0892 -1.8004 4.7046 8 8 1.1325 -1.3374 5.2949 9 7 2.9675 -2.5873 5.3574 10 6 2.7691 -2.8851 6.7779 11 6 4.1169 -3.2257 7.4203 12 6 3.8764 -3.6835 8.8678 13 1 4.8037 -3.8097 9.4264 14 6 2.9324 -2.6611 9.5327 15 6 1.5117 -3.1831 9.2321 16 6 1.7323 -4.4724 8.4078 17 1 0.9655 -5.2221 8.6030 18 6 1.8025 -4.0906 6.9206 19 7 3.0832 -4.9350 8.8079 20 6 3.4985 -6.2141 9.0665 21 1 2.7709 -6.9962 9.2254 22 6 4.8544 -6.5053 9.1243 23 7 5.7378 -5.6024 8.7542 24 14 5.4255 -8.1785 9.7274 25 1 6.9089 -8.2368 9.6943 26 1 4.9533 -8.3905 11.1194 27 1 4.8682 -9.2380 8.8489 28 7 3.2775 -1.9274 2.5119 29 7 3.1389 -1.4795 1.3158 30 6 4.0536 -1.7576 0.2058 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 0.5570 -0.1791 2.7502 39 1 3.7306 -2.9569 4.8863 40 1 2.3403 -2.0146 7.2745 41 1 4.7560 -2.3428 7.4180 42 1 4.5967 -4.0274 6.8588 43 1 3.0733 -1.6718 9.0975 44 1 3.1057 -2.6301 10.6085 45 1 0.9536 -2.4506 8.6490 46 1 0.9867 -3.4107 10.1597 47 1 2.1689 -4.9390 6.3427 48 1 0.8100 -3.8084 6.5690 49 1 6.6854 -5.8061 8.7944 50 1 4.8362 -0.9992 0.1812 51 1 4.5043 -2.7404 0.3438 52 1 3.5010 -1.7400 -0.7335 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021252651.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:39 Heat of formation + Delta-G solvation = 61.495719 kcal Electronic energy + Delta-G solvation = -31329.226963 eV Core-core repulsion = 27330.765500 eV Total energy + Delta-G solvation = -3998.461463 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -42.80102 -39.72708 -38.31019 -36.09754 -34.29418 -33.60161 -32.55075 -30.24309 -30.00828 -29.43930 -29.10300 -27.56201 -27.44274 -24.70140 -23.48355 -23.20591 -22.76289 -21.20411 -20.38455 -19.52570 -19.09011 -18.50736 -17.56663 -16.80306 -16.44294 -16.19115 -15.79543 -14.89802 -14.80441 -14.35846 -14.27785 -14.05173 -14.01166 -13.93121 -13.48891 -12.98981 -12.93418 -12.88674 -12.78716 -12.65946 -12.52733 -12.03636 -11.96081 -11.80858 -11.61223 -11.46979 -11.28533 -11.24634 -10.92957 -10.81187 -10.75006 -10.71146 -10.46150 -10.11604 -9.78935 -9.74925 -9.49992 -9.32630 -9.24352 -9.16228 -9.01401 -8.57750 -8.38774 -6.77064 -5.72647 -3.06403 1.63797 2.07250 2.32036 3.41685 3.46810 3.47558 3.58786 3.69767 4.14110 4.22228 4.42870 4.51047 4.65968 4.77663 4.85510 4.93508 5.07558 5.21581 5.26927 5.35382 5.39217 5.44410 5.46281 5.49441 5.66126 5.68518 5.71990 5.78400 5.83028 5.91416 5.98717 6.01858 6.05771 6.15219 6.26441 6.36992 6.40932 6.55323 6.60322 6.64321 6.76362 6.77061 6.84583 6.97618 7.02204 7.17478 7.22741 7.56404 7.61468 7.76926 7.80889 8.08004 8.28873 8.60563 9.18422 9.80580 10.60501 11.40089 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.002496 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.865574 B =11215.802878 C =12113.630914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.022 4.022 3 C -0.144 4.144 4 C 0.012 3.988 5 C -0.175 4.175 6 C -0.009 4.009 7 C 0.598 3.402 8 O -0.541 6.541 9 N -0.706 5.706 10 C 0.146 3.854 11 C -0.121 4.121 12 C 0.185 3.815 13 H 0.112 0.888 14 C -0.144 4.144 15 C -0.131 4.131 16 C 0.149 3.851 17 H 0.066 0.934 18 C -0.133 4.133 19 N -0.584 5.584 20 C -0.220 4.220 21 H 0.074 0.926 22 C -0.006 4.006 23 N -0.913 5.913 24 Si 0.909 3.091 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.286 1.286 28 N -0.261 5.261 29 N -0.284 5.284 30 C 0.085 3.915 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.159 0.841 39 H 0.402 0.598 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.048 0.952 49 H 0.252 0.748 50 H 0.083 0.917 51 H 0.098 0.902 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 12.759 -19.381 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.112 4.112 5 C -0.203 4.203 6 C -0.169 4.169 7 C 0.382 3.618 8 O -0.417 6.417 9 N -0.355 5.355 10 C 0.043 3.957 11 C -0.161 4.161 12 C 0.077 3.923 13 H 0.129 0.871 14 C -0.183 4.183 15 C -0.170 4.170 16 C 0.040 3.960 17 H 0.084 0.916 18 C -0.173 4.173 19 N -0.305 5.305 20 C -0.348 4.348 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.560 5.560 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.213 1.213 27 H -0.213 1.213 28 N -0.096 5.096 29 N -0.071 5.071 30 C -0.055 4.055 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.177 0.823 39 H 0.237 0.763 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.102 0.898 51 H 0.116 0.884 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.834 12.202 -18.962 23.061 hybrid contribution 0.162 -0.641 -0.215 0.695 sum -4.672 11.561 -19.177 22.874 Atomic orbital electron populations 1.21831 0.93040 1.02646 1.02617 1.19655 0.96791 0.95382 0.92424 1.21849 1.01037 0.94607 1.02679 1.21332 0.91195 1.00516 0.98141 1.21444 1.03020 1.04708 0.91089 1.22088 0.95485 1.03690 0.95633 1.16925 0.82737 0.78783 0.83354 1.90758 1.30392 1.53368 1.67163 1.46258 1.27561 1.49254 1.12455 1.21782 0.97856 0.97774 0.78296 1.22364 0.93317 1.00113 1.00266 1.21363 0.95605 0.83530 0.91818 0.87058 1.22756 0.96492 0.98828 1.00250 1.22632 0.96993 0.97994 0.99426 1.21557 0.89784 0.93640 0.90997 0.91616 1.22873 0.97628 0.97385 0.99463 1.45185 1.04947 1.02344 1.78052 1.18947 0.90861 0.84366 1.40638 0.90852 1.24805 0.95996 0.97813 1.01655 1.69859 1.00608 1.33614 1.51898 0.86252 0.77392 0.83671 0.78734 1.21724 1.21280 1.21261 1.73585 1.23705 1.20956 0.91387 1.45282 1.19284 1.34831 1.07737 1.22133 0.92917 1.04385 0.86089 0.91647 0.91830 0.92133 0.90316 0.92746 0.91753 0.91770 0.82317 0.76347 0.89803 0.93813 0.90325 0.92756 0.92868 0.92204 0.92825 0.91986 0.93324 0.93744 0.89803 0.88381 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.78 37.16 0.33 -0.57 16 2 C -0.02 -0.15 3.10 -91.77 -0.28 -0.43 16 3 C -0.14 -0.85 9.18 37.16 0.34 -0.51 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -2.32 9.96 -39.36 -0.39 -2.71 16 6 C -0.01 -0.14 7.13 -82.76 -0.59 -0.73 16 7 C 0.60 10.93 7.79 -12.39 -0.10 10.83 16 8 O -0.54 -11.15 16.59 5.30 0.09 -11.06 16 9 N -0.71 -12.75 5.08 -53.60 -0.27 -13.02 16 10 C 0.15 2.86 2.13 -66.71 -0.14 2.72 16 11 C -0.12 -2.56 5.00 -26.29 -0.13 -2.70 16 12 C 0.18 4.26 3.12 -65.94 -0.21 4.06 16 13 H 0.11 2.92 6.36 -51.93 -0.33 2.59 16 14 C -0.14 -2.85 5.96 -25.40 -0.15 -3.01 16 15 C -0.13 -2.52 5.99 -25.20 -0.15 -2.67 16 16 C 0.15 3.17 4.28 -65.73 -0.28 2.89 16 17 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.13 -2.72 5.37 -25.22 -0.14 -2.85 16 19 N -0.58 -14.48 2.81 -152.99 -0.43 -14.91 16 20 C -0.22 -5.98 10.38 -15.06 -0.16 -6.14 16 21 H 0.07 1.96 7.85 -52.49 -0.41 1.55 16 22 C -0.01 -0.16 5.42 -17.43 -0.09 -0.26 16 23 N -0.91 -25.57 10.60 55.49 0.59 -24.98 16 24 Si 0.91 21.79 29.56 -169.99 -5.03 16.77 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 N -0.26 -3.77 11.67 33.42 0.39 -3.38 16 29 N -0.28 -3.12 3.70 -63.85 -0.24 -3.36 16 30 C 0.09 0.52 11.11 59.84 0.66 1.19 16 31 H 0.06 0.44 7.35 -51.93 -0.38 0.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.39 6.86 -51.93 -0.36 0.04 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.16 1.97 7.47 -52.49 -0.39 1.58 16 39 H 0.40 6.92 8.33 -40.82 -0.34 6.58 16 40 H 0.08 1.70 4.96 -51.93 -0.26 1.44 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.89 8.00 -51.93 -0.42 1.48 16 43 H 0.05 0.99 7.03 -51.93 -0.36 0.63 16 44 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 45 H 0.06 1.09 7.06 -51.93 -0.37 0.72 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.09 0.32 6.88 -51.93 -0.36 -0.04 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -32.19 404.16 -9.37 -41.56 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.60 Total: 7.54 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.96 Total: -1.24 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.04 Total: -59.65 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.19 -9.37 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021252651.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.057 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.31 seconds