Wall clock time and date at job start Wed Apr 1 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47139 * 2 1 4 4 C 1.50700 * 109.46847 * 119.99947 * 2 1 3 5 5 C 1.35369 * 126.38472 * 324.96911 * 4 2 1 6 6 C 1.41509 * 105.50187 * 180.02562 * 5 4 2 7 7 C 1.47705 * 126.51775 * 180.02562 * 6 5 4 8 8 O 1.21576 * 119.99886 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00218 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00358 * 180.02562 * 9 7 6 11 11 C 1.53144 * 109.43588 * 205.00198 * 10 9 7 12 12 C 1.53705 * 108.87613 * 186.08567 * 11 10 9 13 13 H 1.08998 * 112.58319 * 187.93011 * 12 11 10 14 14 C 1.54223 * 107.72188 * 312.05760 * 12 11 10 15 15 C 1.54317 * 104.78870 * 88.98263 * 14 12 11 16 16 C 1.54609 * 104.74961 * 359.82002 * 15 14 12 17 17 H 1.09001 * 112.18992 * 146.80291 * 16 15 14 18 18 C 1.53702 * 108.37375 * 271.11279 * 16 15 14 19 19 N 1.48290 * 107.27703 * 64.00539 * 12 11 10 20 20 C 1.36943 * 128.20734 * 107.43775 * 19 12 11 21 21 H 1.07997 * 119.99395 * 164.68860 * 20 19 12 22 22 C 1.38803 * 119.99985 * 344.69061 * 20 19 12 23 23 N 1.31623 * 120.00162 * 350.76583 * 22 20 19 24 24 Si 1.86805 * 120.00130 * 170.76733 * 22 20 19 25 25 H 1.48492 * 109.47438 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.46551 * 299.99934 * 24 22 20 27 27 H 1.48495 * 109.47093 * 59.99499 * 24 22 20 28 28 N 1.31811 * 106.96128 * 0.26535 * 6 5 4 29 29 N 1.28470 * 110.07431 * 359.55931 * 28 6 5 30 30 C 1.46494 * 124.88379 * 180.16243 * 29 28 6 31 31 H 1.09007 * 109.46931 * 300.00303 * 1 2 3 32 32 H 1.09003 * 109.46964 * 60.00192 * 1 2 3 33 33 H 1.08992 * 109.47567 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46938 * 239.99508 * 2 1 3 35 35 H 1.09002 * 109.47309 * 179.97438 * 3 2 1 36 36 H 1.09003 * 109.47036 * 299.99764 * 3 2 1 37 37 H 1.08997 * 109.47607 * 59.99918 * 3 2 1 38 38 H 1.07995 * 127.25019 * 0.02811 * 5 4 2 39 39 H 0.97001 * 119.99583 * 359.97438 * 9 7 6 40 40 H 1.09006 * 109.43152 * 324.91330 * 10 9 7 41 41 H 1.08998 * 109.57251 * 66.26369 * 11 10 9 42 42 H 1.09002 * 109.56874 * 305.90311 * 11 10 9 43 43 H 1.08998 * 110.51310 * 330.07571 * 14 12 11 44 44 H 1.09008 * 110.30954 * 207.78225 * 14 12 11 45 45 H 1.08997 * 110.37853 * 241.00512 * 15 14 12 46 46 H 1.08993 * 110.38315 * 118.64166 * 15 14 12 47 47 H 1.08998 * 109.57151 * 167.84374 * 18 16 15 48 48 H 1.09005 * 109.56516 * 288.20626 * 18 16 15 49 49 H 0.97006 * 119.99704 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.47170 * 270.33293 * 30 29 28 51 51 H 1.09004 * 109.47486 * 30.32945 * 30 29 28 52 52 H 1.08997 * 109.47324 * 150.33332 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4586 -0.6959 2.4565 6 6 2.2890 -1.5006 3.2722 7 6 2.0892 -1.8004 4.7046 8 8 1.1325 -1.3374 5.2949 9 7 2.9675 -2.5873 5.3574 10 6 2.7691 -2.8851 6.7779 11 6 4.1169 -3.2257 7.4203 12 6 3.8764 -3.6835 8.8678 13 1 4.8037 -3.8097 9.4264 14 6 2.9324 -2.6611 9.5327 15 6 1.5117 -3.1831 9.2321 16 6 1.7323 -4.4724 8.4078 17 1 0.9655 -5.2221 8.6030 18 6 1.8025 -4.0906 6.9206 19 7 3.0832 -4.9350 8.8079 20 6 3.4985 -6.2141 9.0665 21 1 2.7709 -6.9962 9.2254 22 6 4.8544 -6.5053 9.1243 23 7 5.7378 -5.6024 8.7542 24 14 5.4255 -8.1785 9.7274 25 1 6.9089 -8.2368 9.6943 26 1 4.9533 -8.3905 11.1194 27 1 4.8682 -9.2380 8.8489 28 7 3.2775 -1.9274 2.5119 29 7 3.1389 -1.4795 1.3158 30 6 4.0536 -1.7576 0.2058 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 0.5570 -0.1791 2.7502 39 1 3.7306 -2.9569 4.8863 40 1 2.3403 -2.0146 7.2745 41 1 4.7560 -2.3428 7.4180 42 1 4.5967 -4.0274 6.8588 43 1 3.0733 -1.6718 9.0975 44 1 3.1057 -2.6301 10.6085 45 1 0.9536 -2.4506 8.6490 46 1 0.9867 -3.4107 10.1597 47 1 2.1689 -4.9390 6.3427 48 1 0.8100 -3.8084 6.5690 49 1 6.6854 -5.8061 8.7944 50 1 4.8362 -0.9992 0.1812 51 1 4.5043 -2.7404 0.3438 52 1 3.5010 -1.7400 -0.7335 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021252651.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:33 Heat of formation + Delta-G solvation = 42.136490 kcal Electronic energy + Delta-G solvation = -31330.066443 eV Core-core repulsion = 27330.765500 eV Total energy + Delta-G solvation = -3999.300943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.74668 -41.36300 -39.86687 -36.70591 -35.89981 -34.59425 -34.36931 -31.99251 -31.36529 -30.98331 -30.52857 -28.35079 -28.01157 -26.53527 -24.97119 -24.61748 -23.60740 -22.76884 -21.47684 -21.01512 -20.49239 -20.20134 -18.82658 -18.16192 -17.58007 -17.31548 -17.25523 -16.73499 -15.95580 -15.74917 -15.53163 -15.38347 -15.02399 -14.71025 -14.64318 -14.54756 -14.29728 -13.97325 -13.87376 -13.63578 -13.49376 -13.41556 -13.22517 -13.09059 -12.98194 -12.80583 -12.61299 -12.55101 -12.54641 -12.25248 -12.10515 -11.96217 -11.76299 -11.74971 -11.44676 -11.38539 -11.23344 -11.11342 -10.96989 -10.56380 -10.21111 -9.94034 -9.88335 -8.75281 -7.80440 -5.15085 0.51532 1.11010 1.48763 1.50572 1.55238 1.56531 2.22606 2.37351 2.52968 3.30592 3.37186 3.50788 3.58227 3.84630 3.97956 3.99576 4.09889 4.19353 4.27846 4.32120 4.35852 4.37810 4.40479 4.47081 4.49190 4.54134 4.61036 4.66305 4.72516 4.73764 4.84144 4.87991 4.94679 4.99473 5.02087 5.11382 5.12878 5.15895 5.17252 5.27819 5.31096 5.31790 5.39019 5.44178 5.54155 5.55760 5.60830 5.77662 5.85204 5.86276 6.29631 6.49007 6.90001 7.12753 7.17858 7.78236 8.59831 9.30522 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017454 B = 0.002496 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.865574 B =11215.802878 C =12113.630914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.019 4.019 3 C -0.142 4.142 4 C 0.031 3.969 5 C -0.196 4.196 6 C -0.042 4.042 7 C 0.599 3.401 8 O -0.569 6.569 9 N -0.705 5.705 10 C 0.159 3.841 11 C -0.106 4.106 12 C 0.178 3.822 13 H 0.077 0.923 14 C -0.136 4.136 15 C -0.120 4.120 16 C 0.141 3.859 17 H 0.067 0.933 18 C -0.122 4.122 19 N -0.603 5.603 20 C -0.234 4.234 21 H 0.072 0.928 22 C -0.055 4.055 23 N -0.933 5.933 24 Si 0.970 3.030 25 H -0.295 1.295 26 H -0.282 1.282 27 H -0.282 1.282 28 N -0.280 5.280 29 N -0.275 5.275 30 C 0.071 3.929 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.159 0.841 39 H 0.405 0.595 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.038 0.962 48 H 0.056 0.944 49 H 0.246 0.754 50 H 0.102 0.898 51 H 0.099 0.901 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 13.906 -21.700 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.094 4.094 5 C -0.224 4.224 6 C -0.200 4.200 7 C 0.385 3.615 8 O -0.448 6.448 9 N -0.354 5.354 10 C 0.056 3.944 11 C -0.146 4.146 12 C 0.071 3.929 13 H 0.095 0.905 14 C -0.175 4.175 15 C -0.159 4.159 16 C 0.034 3.966 17 H 0.085 0.915 18 C -0.163 4.163 19 N -0.324 5.324 20 C -0.363 4.363 21 H 0.090 0.910 22 C -0.249 4.249 23 N -0.581 5.581 24 Si 0.799 3.201 25 H -0.221 1.221 26 H -0.208 1.208 27 H -0.209 1.209 28 N -0.117 5.117 29 N -0.064 5.064 30 C -0.068 4.068 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.176 0.824 39 H 0.240 0.760 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.121 0.879 51 H 0.118 0.882 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.453 13.354 -21.294 25.720 hybrid contribution 0.364 -0.978 0.368 1.106 sum -5.089 12.376 -20.926 24.839 Atomic orbital electron populations 1.21849 0.92745 1.02326 1.03277 1.19860 0.96965 0.95711 0.91386 1.21842 1.01107 0.93876 1.03124 1.21871 0.90027 0.99016 0.98528 1.21584 1.03446 1.05268 0.92077 1.21802 0.97414 1.06050 0.94733 1.17238 0.81960 0.77888 0.84438 1.90719 1.31416 1.54424 1.68193 1.46133 1.27914 1.49501 1.11820 1.21492 0.96406 0.97243 0.79282 1.22118 0.94180 0.99205 0.99081 1.21302 0.94904 0.84125 0.92587 0.90526 1.22664 0.95885 0.98595 1.00316 1.22544 0.96732 0.96846 0.99779 1.21747 0.88344 0.94803 0.91701 0.91460 1.22730 0.98031 0.96851 0.98666 1.45358 1.06462 1.02137 1.78489 1.19226 0.91148 0.85590 1.40325 0.90996 1.25498 0.96156 1.00921 1.02364 1.70041 1.00262 1.34935 1.52816 0.85296 0.76426 0.80150 0.78232 1.22120 1.20845 1.20858 1.73514 1.23637 1.21730 0.92817 1.45787 1.19665 1.33431 1.07497 1.22630 0.93290 1.05157 0.85679 0.92695 0.89535 0.92952 0.87501 0.92624 0.89474 0.93223 0.82352 0.75959 0.89614 0.92756 0.93627 0.90922 0.92422 0.90762 0.91498 0.94266 0.92584 0.94432 0.87937 0.88243 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.78 71.98 0.63 -0.82 16 2 C -0.02 -0.20 3.10 -11.54 -0.04 -0.23 16 3 C -0.14 -1.24 9.18 71.98 0.66 -0.58 16 4 C 0.03 0.59 5.84 41.40 0.24 0.83 16 5 C -0.20 -5.16 9.96 22.41 0.22 -4.93 16 6 C -0.04 -1.34 7.13 42.46 0.30 -1.03 16 7 C 0.60 22.28 7.79 86.74 0.68 22.96 16 8 O -0.57 -23.76 16.59 -3.95 -0.07 -23.83 16 9 N -0.70 -25.99 5.08 -441.77 -2.25 -28.23 16 10 C 0.16 6.30 2.13 45.79 0.10 6.40 16 11 C -0.11 -4.61 5.00 30.88 0.15 -4.46 16 12 C 0.18 8.38 3.12 45.30 0.14 8.53 16 13 H 0.08 4.16 6.36 -2.39 -0.02 4.14 16 14 C -0.14 -5.25 5.96 31.46 0.19 -5.06 16 15 C -0.12 -4.43 5.99 31.59 0.19 -4.24 16 16 C 0.14 6.04 4.28 45.43 0.19 6.23 16 17 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 18 C -0.12 -5.05 5.37 31.58 0.17 -4.88 16 19 N -0.60 -30.42 2.81 -637.94 -1.79 -32.21 16 20 C -0.23 -12.98 10.38 84.03 0.87 -12.11 16 21 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 22 C -0.06 -3.07 5.42 84.86 0.46 -2.61 16 23 N -0.93 -53.88 10.60 21.65 0.23 -53.65 16 24 Si 0.97 45.61 29.56 68.60 2.03 47.64 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 28 N -0.28 -7.98 11.67 -48.17 -0.56 -8.54 16 29 N -0.28 -5.56 3.70 -355.93 -1.32 -6.88 16 30 C 0.07 0.65 11.11 127.77 1.42 2.07 16 31 H 0.05 0.67 7.35 -2.38 -0.02 0.66 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.11 0.55 6.86 -2.39 -0.02 0.53 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.16 4.01 7.47 -2.91 -0.02 3.99 16 39 H 0.41 14.42 8.33 -92.71 -0.77 13.65 16 40 H 0.09 3.41 4.96 -2.38 -0.01 3.40 16 41 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.04 2.28 8.00 -2.39 -0.02 2.26 16 43 H 0.07 2.54 7.03 -2.39 -0.02 2.52 16 44 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.07 2.55 7.06 -2.39 -0.02 2.53 16 46 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 49 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 50 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.13 0.30 6.88 -2.39 -0.02 0.28 16 Total: -1.00 -72.00 404.16 3.01 -68.99 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.15 Total: 30.67 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.59 Total: 6.05 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.69 Total: -129.52 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.07 Total: -23.83 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.00 3.01 -68.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021252651.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.127 kcal (2) G-P(sol) polarization free energy of solvation -72.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds