Wall clock time and date at job start Wed Apr 1 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47353 * 2 1 4 4 C 1.53002 * 109.46879 * 239.99881 * 2 1 3 5 5 C 1.50696 * 109.46906 * 119.99943 * 2 1 3 6 6 N 1.30450 * 125.98831 * 238.82542 * 5 2 1 7 7 N 1.39935 * 108.89698 * 180.26267 * 6 5 2 8 8 H 0.96999 * 125.75942 * 179.73538 * 7 6 5 9 9 C 1.34258 * 108.49180 * 359.75337 * 7 6 5 10 10 C 1.38040 * 107.41647 * 359.97438 * 9 7 6 11 11 C 1.47431 * 126.41383 * 179.97438 * 10 9 7 12 12 O 1.21603 * 120.00021 * 183.21159 * 11 10 9 13 13 N 1.34774 * 120.00257 * 3.20659 * 11 10 9 14 14 C 1.46499 * 120.00302 * 180.02562 * 13 11 10 15 15 C 1.53150 * 109.43449 * 119.64140 * 14 13 11 16 16 C 1.53702 * 108.88068 * 66.17583 * 15 14 13 17 17 H 1.09003 * 112.09898 * 187.61310 * 16 15 14 18 18 C 1.54605 * 107.83126 * 312.22840 * 16 15 14 19 19 C 1.54312 * 104.75148 * 88.66354 * 18 16 15 20 20 C 1.54608 * 104.74837 * 359.97438 * 19 18 16 21 21 H 1.09008 * 112.68900 * 147.07453 * 20 19 18 22 22 C 1.53148 * 109.43589 * 239.85948 * 14 13 11 23 23 N 1.48292 * 107.27405 * 64.00858 * 16 15 14 24 24 C 1.36937 * 128.21264 * 107.42210 * 23 16 15 25 25 H 1.07992 * 120.00135 * 33.74190 * 24 23 16 26 26 C 1.38814 * 119.99753 * 213.74526 * 24 23 16 27 27 N 1.31616 * 120.00057 * 5.09295 * 26 24 23 28 28 Si 1.86804 * 119.99866 * 185.09101 * 26 24 23 29 29 H 1.48506 * 109.46845 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.46788 * 120.00049 * 28 26 24 31 31 H 1.48498 * 109.47147 * 240.00166 * 28 26 24 32 32 H 1.09005 * 109.46823 * 295.00547 * 1 2 3 33 33 H 1.09000 * 109.46742 * 54.99922 * 1 2 3 34 34 H 1.08989 * 109.47414 * 175.00056 * 1 2 3 35 35 H 1.09000 * 109.47134 * 180.02562 * 3 2 1 36 36 H 1.09009 * 109.46985 * 299.99861 * 3 2 1 37 37 H 1.08996 * 109.47345 * 59.99700 * 3 2 1 38 38 H 1.09001 * 109.46916 * 305.39773 * 4 2 1 39 39 H 1.08995 * 109.46948 * 65.39539 * 4 2 1 40 40 H 1.08995 * 109.47084 * 185.39692 * 4 2 1 41 41 H 1.08003 * 126.29262 * 180.02562 * 9 7 6 42 42 H 0.97006 * 119.99613 * 0.02562 * 13 11 10 43 43 H 1.08997 * 109.43709 * 359.73050 * 14 13 11 44 44 H 1.08999 * 109.56740 * 186.00023 * 15 14 13 45 45 H 1.09004 * 109.56946 * 306.35512 * 15 14 13 46 46 H 1.09002 * 110.38515 * 207.48049 * 18 16 15 47 47 H 1.09004 * 110.38168 * 329.73291 * 18 16 15 48 48 H 1.08998 * 110.38255 * 241.18384 * 19 18 16 49 49 H 1.08996 * 110.38039 * 118.82144 * 19 18 16 50 50 H 1.09006 * 109.56404 * 53.64598 * 22 14 13 51 51 H 1.08997 * 109.56899 * 173.88351 * 22 14 13 52 52 H 0.97008 * 120.00017 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 2.8030 -0.1986 2.1502 7 7 3.0530 -1.1712 3.1247 8 1 3.6005 -1.0525 3.9166 9 6 2.4074 -2.2964 2.7788 10 6 1.7484 -2.0464 1.5919 11 6 0.9109 -2.9977 0.8388 12 8 0.4297 -2.6709 -0.2292 13 7 0.6785 -4.2295 1.3338 14 6 -0.1533 -5.1749 0.5851 15 6 0.6699 -6.4214 0.2475 16 6 1.0162 -7.1571 1.5519 17 1 1.7128 -7.9791 1.3866 18 6 1.5543 -6.1120 2.5562 19 6 0.3006 -5.5880 3.2874 20 6 -0.8772 -6.3651 2.6557 21 1 -1.6813 -6.5601 3.3654 22 6 -1.3648 -5.5711 1.4342 23 7 -0.2603 -7.6160 2.1509 24 6 -0.7527 -8.8918 2.2210 25 1 -0.0767 -9.7260 2.3369 26 6 -2.1209 -9.1129 2.1431 27 7 -2.9371 -8.1090 1.9017 28 14 -2.8037 -10.8354 2.3809 29 1 -1.6866 -11.7795 2.6381 30 1 -3.7345 -10.8435 3.5380 31 1 -3.5327 -11.2523 1.1562 32 1 -0.3633 0.4344 0.9314 33 1 -0.3633 0.5895 -0.8418 34 1 -0.3633 -1.0236 -0.0895 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8901 37 1 1.6768 1.9563 0.8899 38 1 1.5999 -1.7172 -1.2988 39 1 1.7577 -0.1547 -2.1366 40 1 3.1257 -0.8058 -1.2023 41 1 2.4037 -3.2260 3.3286 42 1 1.0620 -4.4901 2.1858 43 1 -0.4955 -4.7056 -0.3372 44 1 0.0886 -7.0787 -0.3991 45 1 1.5882 -6.1261 -0.2600 46 1 2.2376 -6.5820 3.2636 47 1 2.0549 -5.3005 2.0280 48 1 0.1825 -4.5176 3.1189 49 1 0.3671 -5.8000 4.3545 50 1 -1.8867 -4.6737 1.7667 51 1 -2.0402 -6.1877 0.8413 52 1 -3.8932 -8.2636 1.8468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021434797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:37 Heat of formation + Delta-G solvation = 132.452706 kcal Electronic energy + Delta-G solvation = -33044.922716 eV Core-core repulsion = 29049.538179 eV Total energy + Delta-G solvation = -3995.384538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.74214 -40.73831 -38.14091 -36.58350 -34.08318 -32.21099 -31.61782 -31.05019 -30.37834 -29.97969 -28.88630 -27.02804 -26.97602 -24.76514 -23.32324 -23.10255 -22.72190 -21.27032 -20.11855 -19.64656 -19.57120 -18.22821 -18.15094 -17.00936 -16.44118 -15.19666 -15.16896 -14.97128 -14.69274 -14.46982 -14.32585 -14.05976 -13.83595 -13.45733 -13.15747 -12.93929 -12.87725 -12.64915 -12.28215 -12.10164 -12.00716 -11.98073 -11.66080 -11.62045 -11.35167 -11.19007 -11.06766 -10.97690 -10.89023 -10.86192 -10.69578 -10.52424 -10.26701 -10.18785 -10.17451 -9.71832 -9.59522 -9.50774 -9.39332 -9.14804 -8.84316 -8.57239 -8.07499 -6.63847 -5.88919 -3.35032 1.45139 2.18615 2.58146 3.31975 3.40166 3.41312 3.68721 3.79765 4.34232 4.39530 4.53268 4.90712 5.11247 5.14567 5.15426 5.25021 5.35165 5.39701 5.45616 5.54245 5.59860 5.65679 5.74276 5.81896 5.83513 5.86460 5.97164 5.97913 6.02504 6.06253 6.10831 6.17105 6.19781 6.25071 6.29366 6.46725 6.48744 6.50970 6.59348 6.63745 6.73611 6.77775 6.89984 6.93437 6.97829 7.06964 7.21054 7.39304 7.46518 7.63732 7.77200 8.03130 8.23430 8.74942 9.04932 9.64977 10.54103 11.23874 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022633 B = 0.003014 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.825364 B = 9287.895753 C = 9805.029152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.020 3.980 3 C -0.137 4.137 4 C -0.154 4.154 5 C 0.147 3.853 6 N -0.299 5.299 7 N -0.465 5.465 8 H 0.442 0.558 9 C 0.095 3.905 10 C -0.276 4.276 11 C 0.571 3.429 12 O -0.541 6.541 13 N -0.733 5.733 14 C 0.145 3.855 15 C -0.136 4.136 16 C 0.148 3.852 17 H 0.067 0.933 18 C -0.162 4.162 19 C -0.174 4.174 20 C 0.188 3.812 21 H 0.082 0.918 22 C -0.128 4.128 23 N -0.578 5.578 24 C -0.237 4.237 25 H 0.067 0.933 26 C 0.013 3.987 27 N -0.896 5.896 28 Si 0.905 3.095 29 H -0.278 1.278 30 H -0.290 1.290 31 H -0.289 1.289 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.182 0.818 42 H 0.422 0.578 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.039 0.961 51 H 0.103 0.897 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.890 13.628 1.398 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.018 3.982 3 C -0.194 4.194 4 C -0.212 4.212 5 C -0.021 4.021 6 N -0.120 5.120 7 N -0.169 5.169 8 H 0.286 0.714 9 C -0.058 4.058 10 C -0.291 4.291 11 C 0.359 3.641 12 O -0.422 6.422 13 N -0.404 5.404 14 C 0.041 3.959 15 C -0.176 4.176 16 C 0.040 3.960 17 H 0.085 0.915 18 C -0.202 4.202 19 C -0.214 4.214 20 C 0.081 3.919 21 H 0.100 0.900 22 C -0.168 4.168 23 N -0.300 5.300 24 C -0.366 4.366 25 H 0.084 0.916 26 C -0.187 4.187 27 N -0.539 5.539 28 Si 0.735 3.265 29 H -0.203 1.203 30 H -0.217 1.217 31 H -0.215 1.215 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.199 0.801 42 H 0.281 0.719 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.057 0.943 51 H 0.122 0.878 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.971 14.685 1.114 18.364 hybrid contribution -0.310 -1.603 0.883 1.856 sum 10.661 13.082 1.997 16.994 Atomic orbital electron populations 1.22211 0.92700 1.05935 1.00518 1.18958 0.96333 0.93592 0.89296 1.21835 1.01071 0.94953 1.01549 1.22179 1.00019 1.04114 0.94844 1.22427 0.93085 0.91641 0.94963 1.77136 1.21824 1.12689 1.00358 1.46083 1.40339 1.08684 1.21825 0.71398 1.23172 0.93920 0.92474 0.96199 1.20447 1.11864 0.97061 0.99712 1.17494 0.79720 0.82015 0.84882 1.90459 1.52290 1.76970 1.22504 1.48912 1.52063 1.12993 1.26414 1.21083 0.91024 0.88127 0.95654 1.22480 0.98826 0.96906 0.99422 1.21568 0.90574 0.93398 0.90446 0.91470 1.23277 0.97502 0.99969 0.99437 1.23423 0.98209 0.99799 0.99937 1.21160 0.92260 0.85267 0.93256 0.89975 1.22464 0.96016 0.98946 0.99377 1.44989 1.18572 1.02637 1.63791 1.18852 0.90336 0.82404 1.45038 0.91557 1.25267 0.97032 0.97161 0.99288 1.69877 1.02676 1.29594 1.51723 0.86182 0.78834 0.84118 0.77351 1.20294 1.21666 1.21525 0.93912 0.92629 0.87881 0.92644 0.92446 0.92656 0.87933 0.92653 0.93971 0.80129 0.71888 0.89692 0.90743 0.93594 0.92251 0.90421 0.90437 0.92325 0.94266 0.87837 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.22 37.16 0.31 -1.78 16 2 C 0.02 0.26 0.75 -155.66 -0.12 0.15 16 3 C -0.14 -1.53 7.96 37.16 0.30 -1.23 16 4 C -0.15 -2.02 8.26 37.16 0.31 -1.71 16 5 C 0.15 2.01 5.64 -82.02 -0.46 1.55 16 6 N -0.30 -3.79 11.93 33.89 0.40 -3.39 16 7 N -0.47 -4.38 7.29 30.85 0.22 -4.16 16 8 H 0.44 2.48 8.96 -182.72 -1.64 0.84 16 9 C 0.09 0.96 11.52 -16.56 -0.19 0.77 16 10 C -0.28 -3.73 5.95 -105.07 -0.63 -4.36 16 11 C 0.57 8.89 7.58 -12.52 -0.09 8.80 16 12 O -0.54 -9.46 9.28 5.28 0.05 -9.41 16 13 N -0.73 -11.17 2.76 -54.73 -0.15 -11.33 16 14 C 0.14 2.61 3.15 -67.78 -0.21 2.40 16 15 C -0.14 -2.48 5.49 -26.29 -0.14 -2.62 16 16 C 0.15 2.79 4.32 -65.74 -0.28 2.50 16 17 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 18 C -0.16 -2.45 5.75 -25.20 -0.14 -2.60 16 19 C -0.17 -2.81 5.76 -25.20 -0.15 -2.95 16 20 C 0.19 3.94 3.12 -65.75 -0.21 3.73 16 21 H 0.08 1.98 7.55 -51.92 -0.39 1.59 16 22 C -0.13 -2.62 5.30 -26.33 -0.14 -2.76 16 23 N -0.58 -13.20 2.73 -152.78 -0.42 -13.62 16 24 C -0.24 -6.11 10.29 -15.06 -0.15 -6.27 16 25 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 26 C 0.01 0.33 5.43 -17.43 -0.09 0.23 16 27 N -0.90 -24.06 10.34 55.49 0.57 -23.49 16 28 Si 0.91 20.75 29.56 -169.99 -5.02 15.72 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 31 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.62 4.57 -51.94 -0.24 1.39 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.57 4.70 -51.93 -0.24 1.33 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.18 1.29 7.47 -52.48 -0.39 0.90 16 42 H 0.42 5.76 0.83 -65.40 -0.05 5.71 16 43 H 0.08 1.63 6.89 -51.93 -0.36 1.27 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.04 5.28 -51.93 -0.27 0.76 16 48 H 0.08 1.13 5.26 -51.93 -0.27 0.86 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.10 2.49 6.75 -51.93 -0.35 2.14 16 52 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -29.41 379.96 -9.98 -39.39 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -9.26 Total: 10.69 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.11 Total: -6.14 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.63 Total: -55.98 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.05 Total: -9.41 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.41 -9.98 -39.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021434797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.843 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds