Wall clock time and date at job start Wed Apr 1 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47353 * 2 1 4 4 C 1.53002 * 109.46879 * 239.99881 * 2 1 3 5 5 C 1.50696 * 109.46906 * 119.99943 * 2 1 3 6 6 N 1.30450 * 125.98831 * 238.82542 * 5 2 1 7 7 N 1.39935 * 108.89698 * 180.26267 * 6 5 2 8 8 H 0.96999 * 125.75942 * 179.73538 * 7 6 5 9 9 C 1.34258 * 108.49180 * 359.75337 * 7 6 5 10 10 C 1.38040 * 107.41647 * 359.97438 * 9 7 6 11 11 C 1.47431 * 126.41383 * 179.97438 * 10 9 7 12 12 O 1.21603 * 120.00021 * 183.21159 * 11 10 9 13 13 N 1.34774 * 120.00257 * 3.20659 * 11 10 9 14 14 C 1.46499 * 120.00302 * 180.02562 * 13 11 10 15 15 C 1.53150 * 109.43449 * 119.64140 * 14 13 11 16 16 C 1.53702 * 108.88068 * 66.17583 * 15 14 13 17 17 H 1.09003 * 112.09898 * 187.61310 * 16 15 14 18 18 C 1.54605 * 107.83126 * 312.22840 * 16 15 14 19 19 C 1.54312 * 104.75148 * 88.66354 * 18 16 15 20 20 C 1.54608 * 104.74837 * 359.97438 * 19 18 16 21 21 H 1.09008 * 112.68900 * 147.07453 * 20 19 18 22 22 C 1.53148 * 109.43589 * 239.85948 * 14 13 11 23 23 N 1.48292 * 107.27405 * 64.00858 * 16 15 14 24 24 C 1.36937 * 128.21264 * 107.42210 * 23 16 15 25 25 H 1.07992 * 120.00135 * 33.74190 * 24 23 16 26 26 C 1.38814 * 119.99753 * 213.74526 * 24 23 16 27 27 N 1.31616 * 120.00057 * 5.09295 * 26 24 23 28 28 Si 1.86804 * 119.99866 * 185.09101 * 26 24 23 29 29 H 1.48506 * 109.46845 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.46788 * 120.00049 * 28 26 24 31 31 H 1.48498 * 109.47147 * 240.00166 * 28 26 24 32 32 H 1.09005 * 109.46823 * 295.00547 * 1 2 3 33 33 H 1.09000 * 109.46742 * 54.99922 * 1 2 3 34 34 H 1.08989 * 109.47414 * 175.00056 * 1 2 3 35 35 H 1.09000 * 109.47134 * 180.02562 * 3 2 1 36 36 H 1.09009 * 109.46985 * 299.99861 * 3 2 1 37 37 H 1.08996 * 109.47345 * 59.99700 * 3 2 1 38 38 H 1.09001 * 109.46916 * 305.39773 * 4 2 1 39 39 H 1.08995 * 109.46948 * 65.39539 * 4 2 1 40 40 H 1.08995 * 109.47084 * 185.39692 * 4 2 1 41 41 H 1.08003 * 126.29262 * 180.02562 * 9 7 6 42 42 H 0.97006 * 119.99613 * 0.02562 * 13 11 10 43 43 H 1.08997 * 109.43709 * 359.73050 * 14 13 11 44 44 H 1.08999 * 109.56740 * 186.00023 * 15 14 13 45 45 H 1.09004 * 109.56946 * 306.35512 * 15 14 13 46 46 H 1.09002 * 110.38515 * 207.48049 * 18 16 15 47 47 H 1.09004 * 110.38168 * 329.73291 * 18 16 15 48 48 H 1.08998 * 110.38255 * 241.18384 * 19 18 16 49 49 H 1.08996 * 110.38039 * 118.82144 * 19 18 16 50 50 H 1.09006 * 109.56404 * 53.64598 * 22 14 13 51 51 H 1.08997 * 109.56899 * 173.88351 * 22 14 13 52 52 H 0.97008 * 120.00017 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 2.8030 -0.1986 2.1502 7 7 3.0530 -1.1712 3.1247 8 1 3.6005 -1.0525 3.9166 9 6 2.4074 -2.2964 2.7788 10 6 1.7484 -2.0464 1.5919 11 6 0.9109 -2.9977 0.8388 12 8 0.4297 -2.6709 -0.2292 13 7 0.6785 -4.2295 1.3338 14 6 -0.1533 -5.1749 0.5851 15 6 0.6699 -6.4214 0.2475 16 6 1.0162 -7.1571 1.5519 17 1 1.7128 -7.9791 1.3866 18 6 1.5543 -6.1120 2.5562 19 6 0.3006 -5.5880 3.2874 20 6 -0.8772 -6.3651 2.6557 21 1 -1.6813 -6.5601 3.3654 22 6 -1.3648 -5.5711 1.4342 23 7 -0.2603 -7.6160 2.1509 24 6 -0.7527 -8.8918 2.2210 25 1 -0.0767 -9.7260 2.3369 26 6 -2.1209 -9.1129 2.1431 27 7 -2.9371 -8.1090 1.9017 28 14 -2.8037 -10.8354 2.3809 29 1 -1.6866 -11.7795 2.6381 30 1 -3.7345 -10.8435 3.5380 31 1 -3.5327 -11.2523 1.1562 32 1 -0.3633 0.4344 0.9314 33 1 -0.3633 0.5895 -0.8418 34 1 -0.3633 -1.0236 -0.0895 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8901 37 1 1.6768 1.9563 0.8899 38 1 1.5999 -1.7172 -1.2988 39 1 1.7577 -0.1547 -2.1366 40 1 3.1257 -0.8058 -1.2023 41 1 2.4037 -3.2260 3.3286 42 1 1.0620 -4.4901 2.1858 43 1 -0.4955 -4.7056 -0.3372 44 1 0.0886 -7.0787 -0.3991 45 1 1.5882 -6.1261 -0.2600 46 1 2.2376 -6.5820 3.2636 47 1 2.0549 -5.3005 2.0280 48 1 0.1825 -4.5176 3.1189 49 1 0.3671 -5.8000 4.3545 50 1 -1.8867 -4.6737 1.7667 51 1 -2.0402 -6.1877 0.8413 52 1 -3.8932 -8.2636 1.8468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021434797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:36 Heat of formation + Delta-G solvation = 116.212507 kcal Electronic energy + Delta-G solvation = -33045.626944 eV Core-core repulsion = 29049.538179 eV Total energy + Delta-G solvation = -3996.088765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.80899 -42.00417 -39.38535 -37.58550 -35.65620 -33.90484 -32.96414 -31.96532 -31.87587 -31.26977 -30.40541 -28.01012 -27.95383 -26.47409 -24.78913 -24.36964 -23.66820 -22.65267 -21.39702 -21.09776 -20.90663 -19.46832 -19.11693 -18.50274 -17.67878 -16.77557 -16.26112 -16.16758 -16.05321 -15.77199 -15.58255 -15.23171 -15.00784 -14.61617 -14.47289 -14.44360 -14.39887 -13.84612 -13.73069 -13.61946 -13.27695 -13.14391 -13.00459 -12.89634 -12.81585 -12.53698 -12.39770 -12.32953 -12.30929 -12.00010 -11.95229 -11.86320 -11.84213 -11.73490 -11.37541 -11.31109 -11.05351 -10.94706 -10.49546 -10.47957 -10.36647 -9.80638 -9.39073 -8.47535 -7.85480 -5.31911 0.59238 1.17743 1.46951 1.49896 1.58368 1.84508 2.50861 2.53360 2.58414 3.33312 3.43764 3.61619 3.72349 3.98759 4.01930 4.09314 4.17639 4.18220 4.22971 4.33339 4.36247 4.44368 4.49785 4.54079 4.56238 4.65000 4.76606 4.85134 4.87768 4.88450 4.99927 5.04348 5.07809 5.08172 5.13406 5.14810 5.18756 5.22547 5.28690 5.35633 5.41585 5.49332 5.53134 5.59796 5.65309 5.65507 5.71508 5.87036 6.05783 6.31295 6.37688 6.56666 6.84230 7.13340 7.56276 7.75434 8.65940 9.25595 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022633 B = 0.003014 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.825364 B = 9287.895753 C = 9805.029152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.016 3.984 3 C -0.129 4.129 4 C -0.148 4.148 5 C 0.134 3.866 6 N -0.315 5.315 7 N -0.445 5.445 8 H 0.460 0.540 9 C 0.122 3.878 10 C -0.309 4.309 11 C 0.570 3.430 12 O -0.564 6.564 13 N -0.724 5.724 14 C 0.160 3.840 15 C -0.129 4.129 16 C 0.139 3.861 17 H 0.069 0.931 18 C -0.148 4.148 19 C -0.162 4.162 20 C 0.182 3.818 21 H 0.041 0.959 22 C -0.119 4.119 23 N -0.600 5.600 24 C -0.244 4.244 25 H 0.065 0.935 26 C -0.039 4.039 27 N -0.920 5.920 28 Si 0.963 3.037 29 H -0.268 1.268 30 H -0.294 1.294 31 H -0.295 1.295 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.220 0.780 42 H 0.430 0.570 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.073 0.927 50 H 0.038 0.962 51 H 0.059 0.941 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.817 14.816 2.963 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 C -0.186 4.186 4 C -0.206 4.206 5 C -0.034 4.034 6 N -0.137 5.137 7 N -0.151 5.151 8 H 0.309 0.691 9 C -0.032 4.032 10 C -0.324 4.324 11 C 0.360 3.640 12 O -0.446 6.446 13 N -0.396 5.396 14 C 0.055 3.945 15 C -0.169 4.169 16 C 0.032 3.968 17 H 0.087 0.913 18 C -0.187 4.187 19 C -0.201 4.201 20 C 0.075 3.925 21 H 0.059 0.941 22 C -0.160 4.160 23 N -0.322 5.322 24 C -0.374 4.374 25 H 0.083 0.917 26 C -0.236 4.236 27 N -0.564 5.564 28 Si 0.792 3.208 29 H -0.192 1.192 30 H -0.221 1.221 31 H -0.223 1.223 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.236 0.764 42 H 0.291 0.709 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.122 0.878 48 H 0.116 0.884 49 H 0.092 0.908 50 H 0.057 0.943 51 H 0.078 0.922 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.958 15.904 2.713 21.333 hybrid contribution -1.196 -1.945 0.392 2.317 sum 12.762 13.959 3.105 19.166 Atomic orbital electron populations 1.22117 0.93434 1.04463 1.00857 1.18988 0.95764 0.94607 0.89286 1.21761 1.00967 0.93829 1.02078 1.22080 0.99861 1.03033 0.95605 1.22518 0.93528 0.91962 0.95376 1.77093 1.21969 1.13729 1.00872 1.46118 1.39505 1.07873 1.21636 0.69109 1.23616 0.91504 0.93451 0.94654 1.20306 1.13781 0.96830 1.01517 1.17807 0.79519 0.81953 0.84722 1.90480 1.53111 1.77284 1.23715 1.48648 1.51890 1.12650 1.26418 1.20652 0.90482 0.88552 0.94795 1.22376 0.99207 0.96262 0.99074 1.21803 0.88983 0.94585 0.91404 0.91286 1.23183 0.97171 0.99562 0.98791 1.23299 0.96107 1.00141 1.00538 1.21106 0.93158 0.85507 0.92716 0.94073 1.22262 0.96473 0.98015 0.99206 1.45188 1.19932 1.02254 1.64808 1.19106 0.90498 0.83924 1.43869 0.91745 1.25916 0.97556 1.00038 1.00096 1.70054 1.02202 1.30933 1.53254 0.85268 0.78091 0.80902 0.76502 1.19223 1.22088 1.22262 0.94059 0.91606 0.90285 0.92633 0.91176 0.92861 0.90200 0.91636 0.93796 0.76383 0.70918 0.91186 0.93949 0.91214 0.89774 0.87763 0.88420 0.90804 0.94335 0.92237 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.22 71.98 0.59 -3.38 16 2 C 0.02 0.39 0.75 -52.93 -0.04 0.35 16 3 C -0.13 -2.65 7.96 71.98 0.57 -2.08 16 4 C -0.15 -3.75 8.26 71.98 0.59 -3.15 16 5 C 0.13 3.39 5.64 43.51 0.25 3.63 16 6 N -0.31 -7.07 11.93 -46.68 -0.56 -7.63 16 7 N -0.45 -6.50 7.29 -56.32 -0.41 -6.91 16 8 H 0.46 2.99 8.96 -213.43 -1.91 1.08 16 9 C 0.12 1.92 11.52 84.28 0.97 2.89 16 10 C -0.31 -7.52 5.95 -20.15 -0.12 -7.64 16 11 C 0.57 16.85 7.58 86.67 0.66 17.51 16 12 O -0.56 -19.67 9.28 -4.04 -0.04 -19.71 16 13 N -0.72 -20.53 2.76 -445.33 -1.23 -21.76 16 14 C 0.16 5.78 3.15 45.09 0.14 5.92 16 15 C -0.13 -4.65 5.49 30.88 0.17 -4.48 16 16 C 0.14 5.03 4.32 45.43 0.20 5.23 16 17 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 18 C -0.15 -3.88 5.75 31.59 0.18 -3.70 16 19 C -0.16 -4.75 5.76 31.59 0.18 -4.56 16 20 C 0.18 7.71 3.12 45.40 0.14 7.85 16 21 H 0.04 2.06 7.55 -2.38 -0.02 2.04 16 22 C -0.12 -5.05 5.30 30.86 0.16 -4.89 16 23 N -0.60 -27.55 2.73 -637.28 -1.74 -29.29 16 24 C -0.24 -12.78 10.29 84.03 0.86 -11.92 16 25 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 26 C -0.04 -2.10 5.43 84.86 0.46 -1.64 16 27 N -0.92 -51.84 10.34 21.65 0.22 -51.62 16 28 Si 0.96 43.80 29.56 68.60 2.03 45.82 16 29 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 30 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 31 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 32 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 2.51 4.57 -2.39 -0.01 2.50 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 2.44 4.70 -2.39 -0.01 2.43 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.22 1.66 7.47 -2.91 -0.02 1.64 16 42 H 0.43 10.16 0.83 -115.79 -0.10 10.06 16 43 H 0.07 2.76 6.89 -2.39 -0.02 2.75 16 44 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.10 2.24 5.28 -2.38 -0.01 2.23 16 48 H 0.10 2.50 5.26 -2.39 -0.01 2.49 16 49 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 51 H 0.06 3.05 6.75 -2.39 -0.02 3.04 16 52 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 Total: -1.00 -68.20 379.96 3.19 -65.00 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -1.05 Total: 30.17 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.97 Total: -4.07 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -3.72 Total: -117.22 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.71 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.20 3.19 -65.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021434797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.216 kcal (2) G-P(sol) polarization free energy of solvation -68.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds