Wall clock time and date at job start Wed Apr 1 2020 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47305 * 2 1 4 4 C 1.50706 * 109.46890 * 120.00043 * 2 1 3 5 5 C 1.35358 * 126.38697 * 145.00201 * 4 2 1 6 6 C 1.41508 * 105.50547 * 180.02562 * 5 4 2 7 7 C 1.47707 * 126.51750 * 179.97438 * 6 5 4 8 8 O 1.21569 * 120.00379 * 353.39816 * 7 6 5 9 9 N 1.34776 * 119.99531 * 173.39903 * 7 6 5 10 10 C 1.47067 * 120.84943 * 5.13065 * 9 7 6 11 11 C 1.53133 * 109.04905 * 233.45122 * 10 9 7 12 12 C 1.53146 * 109.61688 * 305.99800 * 11 10 9 13 13 C 1.52818 * 109.26580 * 60.84156 * 12 11 10 14 14 H 1.09004 * 109.47634 * 58.01873 * 13 12 11 15 15 C 1.53066 * 110.33622 * 178.55264 * 13 12 11 16 16 N 1.47073 * 108.33355 * 175.44298 * 15 13 12 17 17 C 1.36936 * 120.46474 * 126.66793 * 16 15 13 18 18 H 1.08008 * 119.99210 * 215.61102 * 17 16 15 19 19 C 1.38806 * 120.00395 * 35.61082 * 17 16 15 20 20 N 1.31615 * 120.00239 * 356.22403 * 19 17 16 21 21 Si 1.86808 * 119.99820 * 176.22223 * 19 17 16 22 22 H 1.48493 * 109.47196 * 270.00116 * 21 19 17 23 23 H 1.48496 * 109.46998 * 30.00474 * 21 19 17 24 24 H 1.48502 * 109.46955 * 150.00213 * 21 19 17 25 25 C 1.46858 * 119.06344 * 306.93881 * 16 15 13 26 26 C 1.52452 * 109.37398 * 52.23127 * 25 16 15 27 27 C 1.46711 * 120.84289 * 185.15328 * 9 7 6 28 28 H 1.09003 * 109.53023 * 245.18451 * 27 9 7 29 29 N 1.31811 * 106.95797 * 0.26200 * 6 5 4 30 30 N 1.28467 * 110.07465 * 359.55903 * 29 6 5 31 31 H 0.96998 * 124.88382 * 180.15984 * 30 29 6 32 32 H 1.08998 * 109.47336 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47423 * 300.00150 * 1 2 3 34 34 H 1.09004 * 109.47141 * 60.00184 * 1 2 3 35 35 H 1.09001 * 109.47418 * 239.99295 * 2 1 3 36 36 H 1.09003 * 109.46977 * 179.97438 * 3 2 1 37 37 H 1.09007 * 109.46789 * 299.99445 * 3 2 1 38 38 H 1.08990 * 109.47136 * 59.99735 * 3 2 1 39 39 H 1.08007 * 127.25303 * 0.02562 * 5 4 2 40 40 H 1.09009 * 109.53917 * 353.31904 * 10 9 7 41 41 H 1.09001 * 109.54639 * 113.57515 * 10 9 7 42 42 H 1.09003 * 109.44603 * 66.03628 * 11 10 9 43 43 H 1.08997 * 109.44493 * 185.98081 * 11 10 9 44 44 H 1.08997 * 109.50274 * 300.90577 * 12 11 10 45 45 H 1.09002 * 109.50610 * 180.78056 * 12 11 10 46 46 H 1.09005 * 109.69070 * 55.73625 * 15 13 12 47 47 H 1.08994 * 109.69421 * 295.15597 * 15 13 12 48 48 H 0.97003 * 120.00277 * 179.97438 * 20 19 17 49 49 H 1.08997 * 109.53322 * 172.28090 * 25 16 15 50 50 H 1.09003 * 109.53335 * 292.50815 * 25 16 15 51 51 H 1.08998 * 109.67691 * 186.19774 * 26 25 16 52 52 H 1.08998 * 109.22310 * 66.11779 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 3.1415 -1.4815 1.3160 6 6 3.1922 -1.9236 2.6593 7 6 4.2212 -2.7975 3.2587 8 8 5.0719 -3.3061 2.5549 9 7 4.2169 -3.0309 4.5861 10 6 3.1338 -2.5179 5.4385 11 6 3.7430 -1.7172 6.5930 12 6 4.7741 -2.5784 7.3282 13 6 5.8881 -2.9696 6.3580 14 1 6.3467 -2.0692 5.9490 15 6 6.9520 -3.8022 7.0774 16 7 7.9419 -4.2460 6.0843 17 6 9.2759 -4.0053 6.2782 18 1 9.9119 -3.7793 5.4350 19 6 9.8107 -4.0517 7.5582 20 7 9.0235 -4.2534 8.5935 21 14 11.6480 -3.8279 7.8115 22 1 12.3207 -5.1503 7.7508 23 1 12.1908 -2.9470 6.7464 24 1 11.8928 -3.2085 9.1388 25 6 7.4789 -4.9455 4.8789 26 6 6.3906 -4.1201 4.2018 27 6 5.2928 -3.8030 5.2176 28 1 4.8877 -4.7322 5.6184 29 7 2.1433 -1.4123 3.2722 30 7 1.4593 -0.6970 2.4532 31 1 0.6457 -0.2196 2.6794 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6767 1.9563 0.8899 39 1 3.8407 -1.7110 0.5255 40 1 2.4821 -1.8715 4.8505 41 1 2.5575 -3.3525 5.8379 42 1 4.2302 -0.8253 6.1987 43 1 2.9551 -1.4237 7.2866 44 1 4.2912 -3.4780 7.7097 45 1 5.1965 -2.0115 8.1579 46 1 6.4857 -4.6699 7.5442 47 1 7.4419 -3.1943 7.8380 48 1 9.3973 -4.2862 9.4880 49 1 8.3144 -5.0802 4.1921 50 1 7.0726 -5.9184 5.1555 51 1 5.9666 -4.6833 3.3704 52 1 6.8234 -3.1913 3.8303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021672704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:39 Heat of formation + Delta-G solvation = 72.721149 kcal Electronic energy + Delta-G solvation = -31873.768132 eV Core-core repulsion = 27875.793440 eV Total energy + Delta-G solvation = -3997.974692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.93834 -40.09925 -37.47914 -36.18774 -35.63190 -32.78872 -32.67975 -31.79592 -30.33206 -29.77080 -28.99396 -27.69759 -25.40802 -25.38772 -23.46047 -22.98442 -22.32984 -21.77211 -21.16486 -19.88113 -19.26745 -18.41760 -17.95892 -16.62138 -16.24037 -15.97385 -15.62810 -15.19429 -14.82533 -14.59581 -14.41124 -14.11854 -13.93017 -13.74268 -13.66908 -13.45291 -13.31468 -12.96554 -12.75658 -12.60531 -12.31019 -12.16802 -11.98432 -11.81569 -11.73790 -11.58501 -11.40063 -11.24097 -10.85587 -10.83609 -10.64096 -10.58472 -10.18605 -10.10245 -9.89659 -9.79334 -9.68320 -9.45732 -9.30081 -9.16431 -8.77942 -8.37113 -8.07224 -6.41075 -5.69495 -3.21190 1.51100 1.98636 2.59435 3.29333 3.43313 3.49206 3.50970 3.59393 4.09625 4.26590 4.40526 4.55998 4.57124 4.87599 4.96986 5.06063 5.17532 5.23588 5.28438 5.29734 5.38624 5.43981 5.48465 5.50967 5.56066 5.59585 5.69124 5.73881 5.75247 5.81412 5.91933 5.98486 6.06719 6.16490 6.28904 6.35780 6.44117 6.52707 6.55511 6.61721 6.72513 6.79373 6.87762 6.93922 7.09487 7.21256 7.32382 7.52768 7.69849 7.85247 7.88129 7.89032 8.51744 8.63519 9.34750 9.94427 10.54254 11.36612 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.002569 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.103454 B =10898.625088 C =11409.797361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 C -0.147 4.147 4 C 0.024 3.976 5 C -0.176 4.176 6 C 0.005 3.995 7 C 0.594 3.406 8 O -0.524 6.524 9 N -0.591 5.591 10 C 0.075 3.925 11 C -0.129 4.129 12 C -0.112 4.112 13 C -0.120 4.120 14 H 0.064 0.936 15 C 0.179 3.821 16 N -0.596 5.596 17 C -0.248 4.248 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.907 5.907 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.280 1.280 24 H -0.291 1.291 25 C 0.141 3.859 26 C -0.123 4.123 27 C 0.157 3.843 28 H 0.065 0.935 29 N -0.262 5.262 30 N -0.386 5.386 31 H 0.440 0.560 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.161 0.839 40 H 0.132 0.868 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.101 0.899 48 H 0.253 0.747 49 H 0.055 0.945 50 H 0.013 0.987 51 H 0.083 0.917 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.600 10.411 -13.619 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.047 4.047 3 C -0.205 4.205 4 C -0.103 4.103 5 C -0.204 4.204 6 C -0.156 4.156 7 C 0.380 3.620 8 O -0.399 6.399 9 N -0.322 5.322 10 C -0.048 4.048 11 C -0.167 4.167 12 C -0.150 4.150 13 C -0.141 4.141 14 H 0.082 0.918 15 C 0.053 3.947 16 N -0.319 5.319 17 C -0.378 4.378 18 H 0.080 0.920 19 C -0.192 4.192 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.205 1.205 24 H -0.218 1.218 25 C 0.014 3.986 26 C -0.162 4.162 27 C 0.056 3.944 28 H 0.083 0.917 29 N -0.097 5.097 30 N -0.098 5.098 31 H 0.284 0.716 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.179 0.821 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.119 0.881 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.031 0.969 51 H 0.102 0.898 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.553 10.116 -12.795 27.029 hybrid contribution 0.797 0.393 -0.158 0.902 sum -20.757 10.509 -12.952 26.628 Atomic orbital electron populations 1.21901 0.94260 1.02499 1.02439 1.19777 0.95776 0.95867 0.93245 1.21877 1.02115 0.94338 1.02129 1.21338 0.96665 1.03416 0.88846 1.21504 0.99461 1.02414 0.97032 1.22302 0.96166 1.03405 0.93716 1.17088 0.82927 0.80002 0.81983 1.90826 1.37296 1.50233 1.61557 1.48146 1.25069 1.52952 1.06031 1.22639 0.89730 0.99071 0.93377 1.21875 0.98894 0.98875 0.97099 1.21499 0.96042 0.99268 0.98236 1.22305 0.96603 0.99859 0.95365 0.91787 1.20950 0.87102 0.95234 0.91432 1.44066 1.02998 1.64423 1.20388 1.19186 0.84424 1.41401 0.92779 0.91979 1.25307 0.97600 0.99853 0.96402 1.69889 1.33255 1.53957 0.98035 0.86290 0.85720 0.77734 0.77056 1.21344 1.20492 1.21763 1.20964 0.95092 0.93113 0.89441 1.22381 0.95266 1.01873 0.96716 1.21345 0.86191 0.92955 0.93940 0.91740 1.73210 1.06931 1.10034 1.19543 1.43481 1.22626 1.37222 1.06490 0.71618 0.91970 0.92899 0.91261 0.88324 0.91728 0.91656 0.92708 0.82091 0.85129 0.92250 0.92177 0.91588 0.92280 0.91759 0.96637 0.88110 0.93650 0.92676 0.96883 0.89844 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 8.95 37.16 0.33 -0.25 16 2 C -0.03 -0.14 3.32 -91.77 -0.30 -0.45 16 3 C -0.15 -0.74 9.18 37.16 0.34 -0.40 16 4 C 0.02 0.20 5.92 -82.21 -0.49 -0.28 16 5 C -0.18 -2.10 10.73 -39.36 -0.42 -2.52 16 6 C 0.00 0.07 6.90 -82.76 -0.57 -0.50 16 7 C 0.59 10.40 7.59 -12.39 -0.09 10.31 16 8 O -0.52 -10.44 12.62 5.31 0.07 -10.37 16 9 N -0.59 -10.07 2.97 -166.47 -0.49 -10.56 16 10 C 0.08 1.06 6.32 -3.66 -0.02 1.04 16 11 C -0.13 -1.80 6.07 -26.59 -0.16 -1.97 16 12 C -0.11 -1.87 5.24 -26.75 -0.14 -2.01 16 13 C -0.12 -2.44 2.21 -90.54 -0.20 -2.64 16 14 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.18 4.41 4.58 -3.70 -0.02 4.39 16 16 N -0.60 -15.77 3.01 -172.78 -0.52 -16.29 16 17 C -0.25 -7.08 9.53 -15.06 -0.14 -7.23 16 18 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 19 C 0.01 0.18 5.31 -17.43 -0.09 0.09 16 20 N -0.91 -26.57 10.64 55.49 0.59 -25.98 16 21 Si 0.90 22.26 29.56 -169.99 -5.02 17.23 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.14 3.27 6.46 -4.13 -0.03 3.24 16 26 C -0.12 -2.60 3.78 -27.07 -0.10 -2.70 16 27 C 0.16 3.05 2.64 -67.73 -0.18 2.87 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 N -0.26 -3.11 8.58 33.42 0.29 -2.82 16 30 N -0.39 -3.25 6.64 33.50 0.22 -3.02 16 31 H 0.44 2.17 8.14 -190.44 -1.55 0.62 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.15 7.43 -51.93 -0.39 -0.23 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.13 1.70 3.74 -112.47 -0.42 1.28 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 2.77 5.97 -51.93 -0.31 2.46 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.05 1.27 7.93 -51.93 -0.41 0.86 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 51 H 0.08 1.74 6.12 -51.93 -0.32 1.43 16 52 H 0.06 1.42 7.46 -51.93 -0.39 1.03 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -32.96 393.20 -11.33 -44.29 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -10.09 Total: 0.62 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.29 Total: 0.99 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.09 Total: -58.68 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.96 -11.33 -44.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021672704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.015 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds