Wall clock time and date at job start Wed Apr 1 2020 05:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47305 * 2 1 4 4 C 1.50706 * 109.46890 * 120.00043 * 2 1 3 5 5 C 1.35358 * 126.38697 * 145.00201 * 4 2 1 6 6 C 1.41508 * 105.50547 * 180.02562 * 5 4 2 7 7 C 1.47707 * 126.51750 * 179.97438 * 6 5 4 8 8 O 1.21569 * 120.00379 * 353.39816 * 7 6 5 9 9 N 1.34776 * 119.99531 * 173.39903 * 7 6 5 10 10 C 1.47067 * 120.84943 * 5.13065 * 9 7 6 11 11 C 1.53133 * 109.04905 * 233.45122 * 10 9 7 12 12 C 1.53146 * 109.61688 * 305.99800 * 11 10 9 13 13 C 1.52818 * 109.26580 * 60.84156 * 12 11 10 14 14 H 1.09004 * 109.47634 * 58.01873 * 13 12 11 15 15 C 1.53066 * 110.33622 * 178.55264 * 13 12 11 16 16 N 1.47073 * 108.33355 * 175.44298 * 15 13 12 17 17 C 1.36936 * 120.46474 * 126.66793 * 16 15 13 18 18 H 1.08008 * 119.99210 * 215.61102 * 17 16 15 19 19 C 1.38806 * 120.00395 * 35.61082 * 17 16 15 20 20 N 1.31615 * 120.00239 * 356.22403 * 19 17 16 21 21 Si 1.86808 * 119.99820 * 176.22223 * 19 17 16 22 22 H 1.48493 * 109.47196 * 270.00116 * 21 19 17 23 23 H 1.48496 * 109.46998 * 30.00474 * 21 19 17 24 24 H 1.48502 * 109.46955 * 150.00213 * 21 19 17 25 25 C 1.46858 * 119.06344 * 306.93881 * 16 15 13 26 26 C 1.52452 * 109.37398 * 52.23127 * 25 16 15 27 27 C 1.46711 * 120.84289 * 185.15328 * 9 7 6 28 28 H 1.09003 * 109.53023 * 245.18451 * 27 9 7 29 29 N 1.31811 * 106.95797 * 0.26200 * 6 5 4 30 30 N 1.28467 * 110.07465 * 359.55903 * 29 6 5 31 31 H 0.96998 * 124.88382 * 180.15984 * 30 29 6 32 32 H 1.08998 * 109.47336 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47423 * 300.00150 * 1 2 3 34 34 H 1.09004 * 109.47141 * 60.00184 * 1 2 3 35 35 H 1.09001 * 109.47418 * 239.99295 * 2 1 3 36 36 H 1.09003 * 109.46977 * 179.97438 * 3 2 1 37 37 H 1.09007 * 109.46789 * 299.99445 * 3 2 1 38 38 H 1.08990 * 109.47136 * 59.99735 * 3 2 1 39 39 H 1.08007 * 127.25303 * 0.02562 * 5 4 2 40 40 H 1.09009 * 109.53917 * 353.31904 * 10 9 7 41 41 H 1.09001 * 109.54639 * 113.57515 * 10 9 7 42 42 H 1.09003 * 109.44603 * 66.03628 * 11 10 9 43 43 H 1.08997 * 109.44493 * 185.98081 * 11 10 9 44 44 H 1.08997 * 109.50274 * 300.90577 * 12 11 10 45 45 H 1.09002 * 109.50610 * 180.78056 * 12 11 10 46 46 H 1.09005 * 109.69070 * 55.73625 * 15 13 12 47 47 H 1.08994 * 109.69421 * 295.15597 * 15 13 12 48 48 H 0.97003 * 120.00277 * 179.97438 * 20 19 17 49 49 H 1.08997 * 109.53322 * 172.28090 * 25 16 15 50 50 H 1.09003 * 109.53335 * 292.50815 * 25 16 15 51 51 H 1.08998 * 109.67691 * 186.19774 * 26 25 16 52 52 H 1.08998 * 109.22310 * 66.11779 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 3.1415 -1.4815 1.3160 6 6 3.1922 -1.9236 2.6593 7 6 4.2212 -2.7975 3.2587 8 8 5.0719 -3.3061 2.5549 9 7 4.2169 -3.0309 4.5861 10 6 3.1338 -2.5179 5.4385 11 6 3.7430 -1.7172 6.5930 12 6 4.7741 -2.5784 7.3282 13 6 5.8881 -2.9696 6.3580 14 1 6.3467 -2.0692 5.9490 15 6 6.9520 -3.8022 7.0774 16 7 7.9419 -4.2460 6.0843 17 6 9.2759 -4.0053 6.2782 18 1 9.9119 -3.7793 5.4350 19 6 9.8107 -4.0517 7.5582 20 7 9.0235 -4.2534 8.5935 21 14 11.6480 -3.8279 7.8115 22 1 12.3207 -5.1503 7.7508 23 1 12.1908 -2.9470 6.7464 24 1 11.8928 -3.2085 9.1388 25 6 7.4789 -4.9455 4.8789 26 6 6.3906 -4.1201 4.2018 27 6 5.2928 -3.8030 5.2176 28 1 4.8877 -4.7322 5.6184 29 7 2.1433 -1.4123 3.2722 30 7 1.4593 -0.6970 2.4532 31 1 0.6457 -0.2196 2.6794 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3634 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6767 1.9563 0.8899 39 1 3.8407 -1.7110 0.5255 40 1 2.4821 -1.8715 4.8505 41 1 2.5575 -3.3525 5.8379 42 1 4.2302 -0.8253 6.1987 43 1 2.9551 -1.4237 7.2866 44 1 4.2912 -3.4780 7.7097 45 1 5.1965 -2.0115 8.1579 46 1 6.4857 -4.6699 7.5442 47 1 7.4419 -3.1943 7.8380 48 1 9.3973 -4.2862 9.4880 49 1 8.3144 -5.0802 4.1921 50 1 7.0726 -5.9184 5.1555 51 1 5.9666 -4.6833 3.3704 52 1 6.8234 -3.1913 3.8303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021672704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:38 Heat of formation + Delta-G solvation = 53.130865 kcal Electronic energy + Delta-G solvation = -31874.617631 eV Core-core repulsion = 27875.793440 eV Total energy + Delta-G solvation = -3998.824191 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.81467 -41.54662 -39.05138 -37.38215 -36.61540 -34.59244 -34.15843 -32.92841 -31.89016 -30.92466 -30.58942 -28.03334 -27.31221 -26.73983 -24.78438 -24.07449 -23.88904 -23.11976 -21.96344 -21.32183 -21.06850 -19.62549 -18.81380 -18.68395 -17.34263 -17.10866 -16.94172 -16.67548 -16.11304 -15.73078 -15.56454 -15.43938 -15.35823 -15.15675 -14.94132 -14.68143 -14.47071 -14.07737 -13.93811 -13.88601 -13.72281 -13.53017 -13.14343 -13.03448 -12.83578 -12.75311 -12.68555 -12.47887 -12.28755 -12.12859 -12.09690 -12.03076 -11.90341 -11.75909 -11.66125 -11.61390 -11.17700 -10.82366 -10.55488 -10.41563 -10.31474 -9.97453 -9.51256 -8.53541 -7.86616 -5.43364 0.48425 1.11343 1.44834 1.46518 1.55526 1.73955 2.12961 2.36083 2.48740 3.24703 3.27740 3.56141 3.63924 3.76574 3.88823 3.92106 4.04452 4.11445 4.19587 4.23879 4.31407 4.39541 4.42685 4.49343 4.59366 4.64670 4.68190 4.75224 4.78953 4.85716 4.90530 4.97026 4.97798 4.99873 5.03398 5.05429 5.09051 5.17312 5.19275 5.31764 5.34678 5.37265 5.39211 5.41204 5.43249 5.57267 5.63776 5.72281 5.82765 6.12607 6.43838 6.47988 6.86870 7.17154 7.19314 7.83711 8.38658 9.16662 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.002569 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.103454 B =10898.625088 C =11409.797361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.146 4.146 4 C 0.049 3.951 5 C -0.200 4.200 6 C -0.024 4.024 7 C 0.588 3.412 8 O -0.560 6.560 9 N -0.593 5.593 10 C 0.073 3.927 11 C -0.119 4.119 12 C -0.108 4.108 13 C -0.106 4.106 14 H 0.038 0.962 15 C 0.189 3.811 16 N -0.615 5.615 17 C -0.270 4.270 18 H 0.057 0.943 19 C -0.042 4.042 20 N -0.930 5.930 21 Si 0.970 3.030 22 H -0.283 1.283 23 H -0.273 1.273 24 H -0.288 1.288 25 C 0.140 3.860 26 C -0.103 4.103 27 C 0.164 3.836 28 H 0.066 0.934 29 N -0.262 5.262 30 N -0.363 5.363 31 H 0.459 0.541 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.000 1.000 47 H 0.070 0.930 48 H 0.252 0.748 49 H 0.050 0.950 50 H 0.016 0.984 51 H 0.087 0.913 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.406 12.132 -14.357 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.044 4.044 3 C -0.204 4.204 4 C -0.078 4.078 5 C -0.228 4.228 6 C -0.183 4.183 7 C 0.375 3.625 8 O -0.438 6.438 9 N -0.324 5.324 10 C -0.049 4.049 11 C -0.157 4.157 12 C -0.147 4.147 13 C -0.127 4.127 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.339 5.339 17 C -0.400 4.400 18 H 0.074 0.926 19 C -0.238 4.238 20 N -0.575 5.575 21 Si 0.798 3.202 22 H -0.209 1.209 23 H -0.198 1.198 24 H -0.214 1.214 25 C 0.014 3.986 26 C -0.142 4.142 27 C 0.061 3.939 28 H 0.084 0.916 29 N -0.098 5.098 30 N -0.078 5.078 31 H 0.307 0.693 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.018 0.982 47 H 0.088 0.912 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.034 0.966 51 H 0.105 0.895 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -24.411 11.858 -13.530 30.324 hybrid contribution 1.596 -0.098 -0.001 1.599 sum -22.815 11.760 -13.531 29.016 Atomic orbital electron populations 1.21914 0.92453 1.02696 1.03890 1.19920 0.97168 0.95741 0.91587 1.21877 1.01187 0.94035 1.03253 1.21689 0.94984 1.01519 0.89635 1.21630 1.01037 1.03896 0.96276 1.21826 0.96817 1.04895 0.94777 1.17533 0.83244 0.79906 0.81794 1.90779 1.39004 1.51747 1.62298 1.48159 1.24979 1.52776 1.06457 1.22903 0.88984 0.99860 0.93155 1.21830 0.98846 0.97690 0.97379 1.21473 0.95493 1.00251 0.97438 1.22023 0.96640 0.97925 0.96146 0.94302 1.20711 0.87527 0.94517 0.90941 1.44327 1.02935 1.65259 1.21369 1.19425 0.85574 1.41978 0.93002 0.92580 1.26041 1.01909 0.99802 0.96014 1.70068 1.34798 1.54489 0.98165 0.85239 0.80319 0.77703 0.76978 1.20926 1.19806 1.21391 1.21041 0.95682 0.93402 0.88516 1.22118 0.95036 1.00164 0.96885 1.21048 0.86558 0.93203 0.93093 0.91580 1.72983 1.06458 1.10316 1.20064 1.43513 1.22527 1.35741 1.06039 0.69303 0.92384 0.91591 0.89826 0.87795 0.93239 0.89853 0.92335 0.82492 0.83551 0.90817 0.93081 0.87901 0.91387 0.92003 0.98202 0.91217 0.93827 0.93155 0.96607 0.89491 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 8.95 71.98 0.64 0.06 16 2 C -0.02 -0.19 3.32 -11.54 -0.04 -0.23 16 3 C -0.15 -1.06 9.18 71.98 0.66 -0.40 16 4 C 0.05 0.74 5.92 41.40 0.25 0.98 16 5 C -0.20 -4.65 10.73 22.41 0.24 -4.41 16 6 C -0.02 -0.68 6.90 42.46 0.29 -0.39 16 7 C 0.59 20.85 7.59 86.75 0.66 21.51 16 8 O -0.56 -23.22 12.62 -3.93 -0.05 -23.27 16 9 N -0.59 -20.14 2.97 -798.86 -2.37 -22.51 16 10 C 0.07 1.91 6.32 86.32 0.55 2.46 16 11 C -0.12 -3.08 6.07 30.69 0.19 -2.89 16 12 C -0.11 -3.55 5.24 30.58 0.16 -3.39 16 13 C -0.11 -4.44 2.21 -10.74 -0.02 -4.47 16 14 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 15 C 0.19 9.73 4.58 86.29 0.40 10.12 16 16 N -0.62 -34.02 3.01 -700.56 -2.11 -36.13 16 17 C -0.27 -15.97 9.53 84.03 0.80 -15.17 16 18 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 19 C -0.04 -2.45 5.31 84.86 0.45 -1.99 16 20 N -0.93 -56.01 10.64 21.65 0.23 -55.78 16 21 Si 0.97 46.65 29.56 68.60 2.03 48.68 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 C 0.14 6.78 6.46 86.13 0.56 7.34 16 26 C -0.10 -4.53 3.78 30.38 0.11 -4.42 16 27 C 0.16 6.49 2.64 45.01 0.12 6.60 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 N -0.26 -5.64 8.58 -48.17 -0.41 -6.05 16 30 N -0.36 -5.02 6.64 -47.93 -0.32 -5.34 16 31 H 0.46 2.70 8.14 -220.00 -1.79 0.91 16 32 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.07 0.09 7.43 -2.39 -0.02 0.07 16 34 H 0.08 0.14 8.14 -2.38 -0.02 0.13 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 38 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.15 3.44 3.74 -80.70 -0.30 3.14 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.00 -0.01 8.14 -2.38 -0.02 -0.02 16 47 H 0.07 4.02 5.97 -2.39 -0.01 4.01 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 49 H 0.05 2.43 7.93 -2.39 -0.02 2.41 16 50 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.09 3.78 6.12 -2.39 -0.01 3.77 16 52 H 0.04 1.80 7.46 -2.39 -0.02 1.78 16 Total: -1.00 -74.97 393.20 1.84 -73.13 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -1.16 Total: 15.96 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.01 Total: 11.32 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -4.98 Total: -125.82 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -74.97 1.84 -73.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021672704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.260 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds