Wall clock time and date at job start Wed Apr 1 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 C 1.50702 * 109.47567 * 119.99750 * 2 1 3 5 5 C 1.35357 * 126.38960 * 144.99637 * 4 2 1 6 6 C 1.41508 * 105.50636 * 179.97438 * 5 4 2 7 7 C 1.47708 * 126.52194 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99571 * 353.02848 * 7 6 5 9 9 N 1.34774 * 120.00332 * 173.02563 * 7 6 5 10 10 C 1.46947 * 120.83998 * 353.67649 * 9 7 6 11 11 C 1.53145 * 109.02692 * 233.98711 * 10 9 7 12 12 C 1.53123 * 109.47931 * 305.93775 * 11 10 9 13 13 C 1.52855 * 109.34588 * 60.64397 * 12 11 10 14 14 H 1.09000 * 109.24695 * 57.50736 * 13 12 11 15 15 C 1.52764 * 110.21090 * 177.55676 * 13 12 11 16 16 N 1.45156 * 110.13048 * 66.65893 * 15 13 12 17 17 C 1.36938 * 121.16176 * 233.76888 * 16 15 13 18 18 H 1.07995 * 120.00429 * 34.60608 * 17 16 15 19 19 C 1.38813 * 119.99596 * 214.60996 * 17 16 15 20 20 N 1.31618 * 120.00127 * 5.61138 * 19 17 16 21 21 Si 1.86807 * 119.99645 * 185.60899 * 19 17 16 22 22 H 1.48496 * 109.46804 * 90.00434 * 21 19 17 23 23 H 1.48499 * 109.47020 * 209.99941 * 21 19 17 24 24 H 1.48493 * 109.47414 * 330.00022 * 21 19 17 25 25 C 1.46967 * 118.06630 * 53.74446 * 16 15 13 26 26 C 1.53102 * 108.62056 * 305.70435 * 25 16 15 27 27 C 1.47297 * 120.84715 * 173.65068 * 9 7 6 28 28 H 1.09009 * 110.07415 * 4.95082 * 27 9 7 29 29 N 1.31810 * 106.95807 * 0.26341 * 6 5 4 30 30 N 1.28464 * 110.07524 * 359.55870 * 29 6 5 31 31 H 0.97003 * 124.88299 * 180.16316 * 30 29 6 32 32 H 1.09003 * 109.47219 * 300.00135 * 1 2 3 33 33 H 1.09001 * 109.47312 * 59.99745 * 1 2 3 34 34 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.47219 * 239.99864 * 2 1 3 36 36 H 1.08992 * 109.47604 * 60.00034 * 3 2 1 37 37 H 1.09000 * 109.47276 * 179.97438 * 3 2 1 38 38 H 1.09002 * 109.46960 * 299.99827 * 3 2 1 39 39 H 1.07998 * 127.25101 * 359.97438 * 5 4 2 40 40 H 1.08996 * 109.54282 * 114.12803 * 10 9 7 41 41 H 1.08999 * 109.62090 * 353.89645 * 10 9 7 42 42 H 1.08998 * 109.47143 * 185.92847 * 11 10 9 43 43 H 1.09005 * 109.46414 * 65.93321 * 11 10 9 44 44 H 1.09007 * 109.48706 * 300.68430 * 12 11 10 45 45 H 1.08994 * 109.49087 * 180.61410 * 12 11 10 46 46 H 1.08999 * 109.51642 * 186.47406 * 15 13 12 47 47 H 1.08997 * 109.51923 * 306.64288 * 15 13 12 48 48 H 0.97002 * 119.99522 * 179.97438 * 20 19 17 49 49 H 1.09005 * 109.61206 * 185.96642 * 25 16 15 50 50 H 1.09001 * 109.75974 * 65.53156 * 25 16 15 51 51 H 1.08997 * 109.45402 * 295.31954 * 26 25 16 52 52 H 1.08995 * 109.45783 * 175.38042 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 3.1416 -1.4814 1.3159 6 6 3.1932 -1.9224 2.6596 7 6 4.2229 -2.7950 3.2594 8 8 5.0698 -3.3090 2.5546 9 7 4.2238 -3.0214 4.5880 10 6 3.2977 -2.3039 5.4751 11 6 4.0989 -1.6269 6.5910 12 6 4.9737 -2.6678 7.2952 13 6 5.9451 -3.2793 6.2857 14 1 6.5442 -2.4864 5.8379 15 6 6.8691 -4.2778 6.9805 16 7 6.1077 -5.4222 7.4469 17 6 6.1658 -5.8270 8.7538 18 1 6.2723 -5.0958 9.5414 19 6 6.0879 -7.1772 9.0663 20 7 6.0696 -8.0753 8.1043 21 14 6.0092 -7.7196 10.8521 22 1 4.5907 -7.7920 11.2853 23 1 6.6381 -9.0576 10.9912 24 1 6.7362 -6.7405 11.6994 25 6 5.2688 -6.1373 6.4749 26 6 4.3305 -5.1302 5.8046 27 6 5.1527 -3.9947 5.1877 28 1 5.8320 -4.3809 4.4277 29 7 2.1446 -1.4105 3.2727 30 7 1.4601 -0.6958 2.4535 31 1 0.6468 -0.2182 2.6799 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.1299 1.4425 0.0005 38 1 1.6766 1.9563 -0.8900 39 1 3.8402 -1.7116 0.5252 40 1 2.5900 -3.0092 5.9107 41 1 2.7562 -1.5488 4.9053 42 1 3.4132 -1.1812 7.3115 43 1 4.7322 -0.8496 6.1632 44 1 4.3416 -3.4517 7.7125 45 1 5.5358 -2.1883 8.0965 46 1 7.6291 -4.6203 6.2782 47 1 7.3497 -3.7972 7.8326 48 1 6.0155 -9.0189 8.3227 49 1 4.6817 -6.8987 6.9885 50 1 5.8990 -6.6084 5.7205 51 1 3.6466 -4.7207 6.5480 52 1 3.7592 -5.6308 5.0230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021672707.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:07 Heat of formation + Delta-G solvation = 57.476356 kcal Electronic energy + Delta-G solvation = -31785.160055 eV Core-core repulsion = 27786.524299 eV Total energy + Delta-G solvation = -3998.635756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.94677 -40.06709 -37.87305 -36.16161 -35.46340 -32.87448 -32.23809 -31.86103 -30.37561 -29.64184 -29.54226 -27.71319 -25.48243 -25.41114 -23.59264 -23.02538 -22.08984 -21.76430 -21.24180 -21.00758 -18.67614 -18.05703 -17.71002 -16.71289 -16.36989 -16.02530 -15.62525 -15.19541 -14.97293 -14.58220 -14.43166 -14.33047 -13.95524 -13.78172 -13.54264 -13.47790 -13.34731 -12.99320 -12.77515 -12.66595 -12.47562 -12.22305 -12.08482 -11.85299 -11.75802 -11.62293 -11.32543 -11.17574 -10.98231 -10.81095 -10.61772 -10.46541 -10.25941 -10.08282 -9.99827 -9.85975 -9.74415 -9.59071 -9.48852 -9.30558 -9.12842 -8.47029 -8.09871 -6.51126 -5.74696 -3.26207 1.49891 1.96173 2.59970 3.28241 3.39333 3.45771 3.47069 3.53907 4.08681 4.25838 4.39791 4.51508 4.56271 4.86779 4.95869 5.04608 5.15743 5.22393 5.26862 5.32401 5.37062 5.42392 5.47087 5.49457 5.52547 5.55300 5.63232 5.72165 5.73190 5.77174 5.87734 5.95654 6.08605 6.18204 6.20580 6.30912 6.36635 6.43805 6.49613 6.57504 6.65956 6.74154 6.78048 6.92657 6.95422 7.06603 7.10143 7.45196 7.64539 7.76550 7.82497 7.84946 8.43563 8.56007 9.27690 9.89359 10.49156 11.33486 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.002388 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.915123 B =11722.033858 C =11866.408998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.027 4.027 3 C -0.146 4.146 4 C 0.022 3.978 5 C -0.177 4.177 6 C 0.003 3.997 7 C 0.595 3.405 8 O -0.539 6.539 9 N -0.590 5.590 10 C 0.088 3.912 11 C -0.132 4.132 12 C -0.107 4.107 13 C -0.109 4.109 14 H 0.058 0.942 15 C 0.155 3.845 16 N -0.585 5.585 17 C -0.251 4.251 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.172 3.828 26 C -0.147 4.147 27 C 0.154 3.846 28 H 0.095 0.905 29 N -0.257 5.257 30 N -0.385 5.385 31 H 0.441 0.559 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.161 0.839 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.017 0.983 47 H 0.055 0.945 48 H 0.254 0.746 49 H 0.091 0.909 50 H 0.020 0.980 51 H 0.061 0.939 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 19.581 -14.559 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.047 4.047 3 C -0.204 4.204 4 C -0.104 4.104 5 C -0.205 4.205 6 C -0.157 4.157 7 C 0.381 3.619 8 O -0.415 6.415 9 N -0.321 5.321 10 C -0.036 4.036 11 C -0.170 4.170 12 C -0.144 4.144 13 C -0.130 4.130 14 H 0.076 0.924 15 C 0.027 3.973 16 N -0.307 5.307 17 C -0.381 4.381 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.046 3.954 26 C -0.187 4.187 27 C 0.053 3.947 28 H 0.113 0.887 29 N -0.093 5.093 30 N -0.098 5.098 31 H 0.285 0.715 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.179 0.821 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.109 0.891 50 H 0.038 0.962 51 H 0.080 0.920 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.557 19.109 -13.864 26.741 hybrid contribution -0.195 -0.101 0.363 0.425 sum -12.752 19.008 -13.501 26.574 Atomic orbital electron populations 1.21903 0.94220 1.02569 1.02440 1.19774 0.95823 0.95824 0.93240 1.21873 1.02023 0.94372 1.02138 1.21339 0.96645 1.03495 0.88887 1.21502 0.99568 1.02363 0.97033 1.22099 0.96270 1.03675 0.93674 1.17014 0.82872 0.80046 0.81979 1.90778 1.38072 1.51510 1.61144 1.48372 1.37532 1.40772 1.05413 1.22344 0.91759 0.97074 0.92405 1.21935 0.99067 0.98490 0.97504 1.21480 0.97874 0.97842 0.97252 1.21864 0.97237 0.98202 0.95700 0.92351 1.20486 0.91860 0.88554 0.96375 1.43517 1.48939 1.31387 1.06873 1.19106 1.45908 0.90209 0.82878 0.91929 1.25266 1.00360 0.96331 0.97226 1.69944 1.53972 1.00421 1.30401 0.86276 0.77649 0.77870 0.84838 1.21485 1.21691 1.20429 1.20787 0.91514 0.92157 0.90962 1.22602 0.99612 0.97235 0.99279 1.21447 0.90624 0.88007 0.94631 0.88726 1.73477 1.06514 1.09601 1.19671 1.43455 1.22637 1.37211 1.06459 0.71521 0.92891 0.91248 0.91925 0.88331 0.92710 0.91793 0.91656 0.82138 0.91726 0.86492 0.91498 0.92540 0.90232 0.92508 0.96541 0.92630 0.93574 0.89097 0.96176 0.92002 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 8.95 37.15 0.33 -0.26 16 2 C -0.03 -0.14 3.32 -91.77 -0.30 -0.45 16 3 C -0.15 -0.68 9.18 37.16 0.34 -0.34 16 4 C 0.02 0.19 5.92 -82.21 -0.49 -0.29 16 5 C -0.18 -2.10 10.74 -39.36 -0.42 -2.52 16 6 C 0.00 0.05 6.83 -82.76 -0.57 -0.52 16 7 C 0.60 10.50 7.70 -12.39 -0.10 10.40 16 8 O -0.54 -11.07 16.40 5.29 0.09 -10.99 16 9 N -0.59 -10.05 2.66 -166.04 -0.44 -10.49 16 10 C 0.09 1.27 5.64 -3.72 -0.02 1.25 16 11 C -0.13 -1.84 6.08 -26.59 -0.16 -2.00 16 12 C -0.11 -1.80 4.87 -26.74 -0.13 -1.93 16 13 C -0.11 -2.01 2.50 -90.74 -0.23 -2.23 16 14 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 15 C 0.16 3.34 5.77 -4.88 -0.03 3.31 16 16 N -0.59 -14.57 2.60 -174.00 -0.45 -15.02 16 17 C -0.25 -6.80 9.56 -15.06 -0.14 -6.94 16 18 H 0.06 1.67 7.83 -52.49 -0.41 1.25 16 19 C 0.01 0.20 5.15 -17.43 -0.09 0.11 16 20 N -0.90 -26.25 11.01 55.49 0.61 -25.64 16 21 Si 0.90 21.67 29.56 -169.99 -5.02 16.65 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.17 4.19 5.23 -3.73 -0.02 4.17 16 26 C -0.15 -2.99 5.02 -26.59 -0.13 -3.12 16 27 C 0.15 2.95 2.65 -67.34 -0.18 2.77 16 28 H 0.09 2.01 7.06 -51.92 -0.37 1.64 16 29 N -0.26 -3.11 8.72 33.42 0.29 -2.81 16 30 N -0.38 -3.27 6.64 33.50 0.22 -3.05 16 31 H 0.44 2.24 8.14 -190.44 -1.55 0.69 16 32 H 0.05 0.16 7.43 -51.93 -0.39 -0.23 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.06 0.96 7.25 -51.93 -0.38 0.59 16 41 H 0.12 1.56 4.16 -69.81 -0.29 1.27 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.52 6.15 -51.92 -0.32 1.20 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 1.25 5.32 -51.93 -0.28 0.97 16 52 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -32.25 393.65 -10.87 -43.12 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -9.76 Total: 0.90 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.33 Total: 1.41 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.23 Total: -57.02 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.25 -10.87 -43.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021672707.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.598 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds