Wall clock time and date at job start Wed Apr 1 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 C 1.50702 * 109.47567 * 119.99750 * 2 1 3 5 5 C 1.35357 * 126.38960 * 144.99637 * 4 2 1 6 6 C 1.41508 * 105.50636 * 179.97438 * 5 4 2 7 7 C 1.47708 * 126.52194 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99571 * 353.02848 * 7 6 5 9 9 N 1.34774 * 120.00332 * 173.02563 * 7 6 5 10 10 C 1.46947 * 120.83998 * 353.67649 * 9 7 6 11 11 C 1.53145 * 109.02692 * 233.98711 * 10 9 7 12 12 C 1.53123 * 109.47931 * 305.93775 * 11 10 9 13 13 C 1.52855 * 109.34588 * 60.64397 * 12 11 10 14 14 H 1.09000 * 109.24695 * 57.50736 * 13 12 11 15 15 C 1.52764 * 110.21090 * 177.55676 * 13 12 11 16 16 N 1.45156 * 110.13048 * 66.65893 * 15 13 12 17 17 C 1.36938 * 121.16176 * 233.76888 * 16 15 13 18 18 H 1.07995 * 120.00429 * 34.60608 * 17 16 15 19 19 C 1.38813 * 119.99596 * 214.60996 * 17 16 15 20 20 N 1.31618 * 120.00127 * 5.61138 * 19 17 16 21 21 Si 1.86807 * 119.99645 * 185.60899 * 19 17 16 22 22 H 1.48496 * 109.46804 * 90.00434 * 21 19 17 23 23 H 1.48499 * 109.47020 * 209.99941 * 21 19 17 24 24 H 1.48493 * 109.47414 * 330.00022 * 21 19 17 25 25 C 1.46967 * 118.06630 * 53.74446 * 16 15 13 26 26 C 1.53102 * 108.62056 * 305.70435 * 25 16 15 27 27 C 1.47297 * 120.84715 * 173.65068 * 9 7 6 28 28 H 1.09009 * 110.07415 * 4.95082 * 27 9 7 29 29 N 1.31810 * 106.95807 * 0.26341 * 6 5 4 30 30 N 1.28464 * 110.07524 * 359.55870 * 29 6 5 31 31 H 0.97003 * 124.88299 * 180.16316 * 30 29 6 32 32 H 1.09003 * 109.47219 * 300.00135 * 1 2 3 33 33 H 1.09001 * 109.47312 * 59.99745 * 1 2 3 34 34 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.47219 * 239.99864 * 2 1 3 36 36 H 1.08992 * 109.47604 * 60.00034 * 3 2 1 37 37 H 1.09000 * 109.47276 * 179.97438 * 3 2 1 38 38 H 1.09002 * 109.46960 * 299.99827 * 3 2 1 39 39 H 1.07998 * 127.25101 * 359.97438 * 5 4 2 40 40 H 1.08996 * 109.54282 * 114.12803 * 10 9 7 41 41 H 1.08999 * 109.62090 * 353.89645 * 10 9 7 42 42 H 1.08998 * 109.47143 * 185.92847 * 11 10 9 43 43 H 1.09005 * 109.46414 * 65.93321 * 11 10 9 44 44 H 1.09007 * 109.48706 * 300.68430 * 12 11 10 45 45 H 1.08994 * 109.49087 * 180.61410 * 12 11 10 46 46 H 1.08999 * 109.51642 * 186.47406 * 15 13 12 47 47 H 1.08997 * 109.51923 * 306.64288 * 15 13 12 48 48 H 0.97002 * 119.99522 * 179.97438 * 20 19 17 49 49 H 1.09005 * 109.61206 * 185.96642 * 25 16 15 50 50 H 1.09001 * 109.75974 * 65.53156 * 25 16 15 51 51 H 1.08997 * 109.45402 * 295.31954 * 26 25 16 52 52 H 1.08995 * 109.45783 * 175.38042 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 3.1416 -1.4814 1.3159 6 6 3.1932 -1.9224 2.6596 7 6 4.2229 -2.7950 3.2594 8 8 5.0698 -3.3090 2.5546 9 7 4.2238 -3.0214 4.5880 10 6 3.2977 -2.3039 5.4751 11 6 4.0989 -1.6269 6.5910 12 6 4.9737 -2.6678 7.2952 13 6 5.9451 -3.2793 6.2857 14 1 6.5442 -2.4864 5.8379 15 6 6.8691 -4.2778 6.9805 16 7 6.1077 -5.4222 7.4469 17 6 6.1658 -5.8270 8.7538 18 1 6.2723 -5.0958 9.5414 19 6 6.0879 -7.1772 9.0663 20 7 6.0696 -8.0753 8.1043 21 14 6.0092 -7.7196 10.8521 22 1 4.5907 -7.7920 11.2853 23 1 6.6381 -9.0576 10.9912 24 1 6.7362 -6.7405 11.6994 25 6 5.2688 -6.1373 6.4749 26 6 4.3305 -5.1302 5.8046 27 6 5.1527 -3.9947 5.1877 28 1 5.8320 -4.3809 4.4277 29 7 2.1446 -1.4105 3.2727 30 7 1.4601 -0.6958 2.4535 31 1 0.6468 -0.2182 2.6799 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.1299 1.4425 0.0005 38 1 1.6766 1.9563 -0.8900 39 1 3.8402 -1.7116 0.5252 40 1 2.5900 -3.0092 5.9107 41 1 2.7562 -1.5488 4.9053 42 1 3.4132 -1.1812 7.3115 43 1 4.7322 -0.8496 6.1632 44 1 4.3416 -3.4517 7.7125 45 1 5.5358 -2.1883 8.0965 46 1 7.6291 -4.6203 6.2782 47 1 7.3497 -3.7972 7.8326 48 1 6.0155 -9.0189 8.3227 49 1 4.6817 -6.8987 6.9885 50 1 5.8990 -6.6084 5.7205 51 1 3.6466 -4.7207 6.5480 52 1 3.7592 -5.6308 5.0230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021672707.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:06 Heat of formation + Delta-G solvation = 38.844033 kcal Electronic energy + Delta-G solvation = -31785.968013 eV Core-core repulsion = 27786.524299 eV Total energy + Delta-G solvation = -3999.443714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.82366 -41.51838 -39.40899 -37.18057 -36.61379 -34.52571 -33.77037 -32.97311 -31.86633 -31.26078 -30.65655 -28.03237 -27.32913 -26.76475 -24.96625 -24.00763 -23.54112 -23.18836 -22.69210 -21.89135 -20.01697 -19.35575 -18.91318 -18.45471 -17.47303 -17.21457 -16.90541 -16.72499 -16.15032 -15.92630 -15.64991 -15.50881 -15.14067 -15.07035 -14.93284 -14.71842 -14.41894 -14.19441 -14.08799 -13.91597 -13.74052 -13.57793 -13.04629 -13.02732 -12.91275 -12.69764 -12.51436 -12.41693 -12.30258 -12.17706 -12.12087 -11.95887 -11.85445 -11.76846 -11.53451 -11.44441 -11.30798 -11.13314 -10.80450 -10.55238 -10.44563 -9.95825 -9.54673 -8.57238 -7.85393 -5.40626 0.45480 1.09729 1.48594 1.49103 1.58581 1.72723 2.12252 2.29488 2.51597 3.24584 3.32223 3.55685 3.65105 3.74865 3.86956 3.94597 4.03187 4.12298 4.17107 4.21426 4.26359 4.40497 4.41854 4.50160 4.58704 4.60213 4.68329 4.77259 4.79575 4.83724 4.88126 4.92656 4.97760 4.98119 5.02490 5.04722 5.09444 5.11837 5.17528 5.24892 5.30327 5.36710 5.36869 5.39914 5.43023 5.61089 5.63808 5.66735 5.73196 6.10378 6.42232 6.45848 6.82281 7.11038 7.17250 7.85517 8.42359 9.21422 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.002388 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.915123 B =11722.033858 C =11866.408998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.049 3.951 5 C -0.200 4.200 6 C -0.026 4.026 7 C 0.590 3.410 8 O -0.580 6.580 9 N -0.590 5.590 10 C 0.087 3.913 11 C -0.122 4.122 12 C -0.101 4.101 13 C -0.098 4.098 14 H 0.070 0.930 15 C 0.154 3.846 16 N -0.597 5.597 17 C -0.257 4.257 18 H 0.070 0.930 19 C -0.048 4.048 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.267 1.267 25 C 0.182 3.818 26 C -0.128 4.128 27 C 0.161 3.839 28 H 0.067 0.933 29 N -0.260 5.260 30 N -0.362 5.362 31 H 0.459 0.541 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.158 0.842 40 H 0.062 0.938 41 H 0.136 0.864 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.001 0.999 47 H 0.062 0.938 48 H 0.250 0.750 49 H 0.062 0.938 50 H -0.010 1.010 51 H 0.069 0.931 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 23.005 -14.461 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.078 4.078 5 C -0.228 4.228 6 C -0.184 4.184 7 C 0.378 3.622 8 O -0.459 6.459 9 N -0.320 5.320 10 C -0.036 4.036 11 C -0.160 4.160 12 C -0.138 4.138 13 C -0.119 4.119 14 H 0.088 0.912 15 C 0.027 3.973 16 N -0.320 5.320 17 C -0.387 4.387 18 H 0.087 0.913 19 C -0.244 4.244 20 N -0.584 5.584 21 Si 0.799 3.201 22 H -0.210 1.210 23 H -0.224 1.224 24 H -0.191 1.191 25 C 0.056 3.944 26 C -0.168 4.168 27 C 0.058 3.942 28 H 0.085 0.915 29 N -0.097 5.097 30 N -0.078 5.078 31 H 0.307 0.693 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.176 0.824 40 H 0.080 0.920 41 H 0.153 0.847 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.019 0.981 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.080 0.920 50 H 0.008 0.992 51 H 0.087 0.913 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.970 22.590 -13.750 30.389 hybrid contribution 0.514 -1.105 0.233 1.241 sum -14.456 21.485 -13.517 29.211 Atomic orbital electron populations 1.21919 0.92629 1.02577 1.03923 1.19923 0.97038 0.95936 0.91530 1.21868 1.01298 0.93782 1.03277 1.21706 0.94914 1.01560 0.89645 1.21639 1.01161 1.03753 0.96241 1.21656 0.96807 1.05168 0.94803 1.17486 0.83077 0.79902 0.81743 1.90743 1.39927 1.53259 1.62004 1.48338 1.37423 1.40396 1.05822 1.22555 0.91369 0.97238 0.92403 1.21891 0.99068 0.97533 0.97496 1.21403 0.97491 0.97942 0.97011 1.21714 0.97152 0.97391 0.95663 0.91180 1.20584 0.92077 0.88203 0.96465 1.43678 1.49680 1.32132 1.06479 1.19444 1.44869 0.90483 0.83890 0.91287 1.26053 1.00665 0.96480 1.01183 1.70132 1.55487 1.00356 1.32401 0.85212 0.77637 0.77058 0.80164 1.21029 1.22379 1.19113 1.20497 0.91286 0.92577 0.90060 1.22321 0.98746 0.96696 0.99067 1.21094 0.90591 0.88363 0.94146 0.91477 1.73281 1.06106 1.09971 1.20326 1.43498 1.22534 1.35702 1.06066 0.69264 0.91574 0.89759 0.92639 0.87828 0.92262 0.92985 0.89895 0.82400 0.91951 0.84732 0.88575 0.91750 0.92476 0.91623 0.98086 0.91975 0.94116 0.92006 0.99153 0.91252 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.95 71.98 0.64 0.02 16 2 C -0.02 -0.18 3.32 -11.54 -0.04 -0.22 16 3 C -0.14 -0.90 9.18 71.98 0.66 -0.23 16 4 C 0.05 0.72 5.92 41.40 0.25 0.97 16 5 C -0.20 -4.59 10.74 22.41 0.24 -4.35 16 6 C -0.03 -0.72 6.83 42.46 0.29 -0.43 16 7 C 0.59 21.14 7.70 86.75 0.67 21.81 16 8 O -0.58 -24.93 16.40 -3.97 -0.07 -24.99 16 9 N -0.59 -20.05 2.66 -797.49 -2.12 -22.17 16 10 C 0.09 2.36 5.64 86.34 0.49 2.84 16 11 C -0.12 -3.05 6.08 30.68 0.19 -2.87 16 12 C -0.10 -3.23 4.87 30.59 0.15 -3.08 16 13 C -0.10 -3.62 2.50 -10.87 -0.03 -3.65 16 14 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 15 C 0.15 6.76 5.77 86.55 0.50 7.26 16 16 N -0.60 -30.66 2.60 -704.43 -1.83 -32.49 16 17 C -0.26 -14.08 9.56 84.03 0.80 -13.28 16 18 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 19 C -0.05 -2.73 5.15 84.86 0.44 -2.29 16 20 N -0.94 -56.57 11.01 21.65 0.24 -56.33 16 21 Si 0.97 45.09 29.56 68.60 2.03 47.12 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.18 9.36 5.23 86.32 0.45 9.81 16 26 C -0.13 -5.40 5.02 30.68 0.15 -5.24 16 27 C 0.16 6.33 2.65 44.94 0.12 6.45 16 28 H 0.07 3.02 7.06 -2.38 -0.02 3.00 16 29 N -0.26 -5.72 8.72 -48.17 -0.42 -6.14 16 30 N -0.36 -5.08 6.64 -47.93 -0.32 -5.40 16 31 H 0.46 2.85 8.14 -219.99 -1.79 1.06 16 32 H 0.07 0.11 7.43 -2.39 -0.02 0.09 16 33 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 40 H 0.06 1.74 7.25 -2.39 -0.02 1.73 16 41 H 0.14 3.26 4.16 -25.51 -0.11 3.15 16 42 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.06 2.11 6.15 -2.38 -0.01 2.10 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.06 2.62 7.90 -2.39 -0.02 2.60 16 48 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.06 3.53 6.17 -2.38 -0.01 3.51 16 50 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 51 H 0.07 2.82 5.32 -2.39 -0.01 2.81 16 52 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -73.33 393.65 2.52 -70.80 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -0.96 Total: 16.08 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 5.97 Total: 13.52 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -4.45 Total: -122.53 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.07 Total: -24.99 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.33 2.52 -70.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021672707.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.648 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds