Wall clock time and date at job start Wed Apr 1 2020 06:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47056 * 2 1 4 4 C 1.53000 * 109.47057 * 120.00111 * 2 1 3 5 5 C 1.50696 * 109.47390 * 64.99882 * 4 2 1 6 6 N 1.30858 * 125.41814 * 304.97658 * 5 4 2 7 7 C 1.33324 * 109.68638 * 179.78235 * 6 5 4 8 8 C 1.36667 * 107.78331 * 0.37865 * 7 6 5 9 9 C 1.46761 * 126.84110 * 179.89286 * 8 7 6 10 10 O 1.21681 * 120.00252 * 7.43860 * 9 8 7 11 11 N 1.34783 * 119.99664 * 187.43716 * 9 8 7 12 12 C 1.49628 * 126.07264 * 357.42744 * 11 9 8 13 13 C 1.51774 * 102.36952 * 154.28557 * 12 11 9 14 14 H 1.09001 * 111.32166 * 288.41719 * 13 12 11 15 15 C 1.51557 * 123.68423 * 151.94655 * 13 12 11 16 16 C 1.56342 * 101.81217 * 208.01513 * 15 13 12 17 17 C 1.55314 * 105.74789 * 25.82428 * 16 15 13 18 18 H 1.08999 * 110.85399 * 125.34549 * 17 16 15 19 19 N 1.46499 * 109.87768 * 247.87204 * 17 16 15 20 20 C 1.36934 * 119.99883 * 269.59185 * 19 17 16 21 21 H 1.08007 * 120.00429 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00136 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99891 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46933 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46887 * 120.00350 * 24 22 20 27 27 H 1.48496 * 109.47318 * 240.00732 * 24 22 20 28 28 C 1.49708 * 104.32266 * 6.36583 * 17 16 15 29 29 H 1.09004 * 107.87890 * 78.30429 * 28 17 16 30 30 C 1.49286 * 126.07257 * 177.73771 * 11 9 8 31 31 N 1.34493 * 125.41923 * 124.99945 * 5 4 2 32 32 H 0.96995 * 126.47454 * 0.02562 * 31 5 4 33 33 H 1.08996 * 109.46785 * 300.00101 * 1 2 3 34 34 H 1.08996 * 109.47217 * 60.00143 * 1 2 3 35 35 H 1.09005 * 109.46806 * 180.02562 * 1 2 3 36 36 H 1.08996 * 109.46785 * 239.99899 * 2 1 3 37 37 H 1.08998 * 109.47489 * 180.02562 * 3 2 1 38 38 H 1.09007 * 109.47338 * 299.99687 * 3 2 1 39 39 H 1.08998 * 109.47284 * 59.99756 * 3 2 1 40 40 H 1.09005 * 109.46869 * 304.99757 * 4 2 1 41 41 H 1.09002 * 109.46997 * 185.00052 * 4 2 1 42 42 H 1.07993 * 126.10578 * 180.26968 * 7 6 5 43 43 H 1.09007 * 110.80149 * 272.62037 * 12 11 9 44 44 H 1.08999 * 110.80312 * 36.11902 * 12 11 9 45 45 H 1.09002 * 110.96174 * 326.14286 * 15 13 12 46 46 H 1.09000 * 110.96280 * 89.84869 * 15 13 12 47 47 H 1.09000 * 110.18514 * 144.51491 * 16 15 13 48 48 H 1.08996 * 110.18914 * 266.35881 * 16 15 13 49 49 H 0.96998 * 120.00278 * 89.60113 * 19 17 16 50 50 H 0.96996 * 119.99751 * 179.97438 * 23 22 20 51 51 H 1.09002 * 110.39659 * 292.39269 * 30 11 9 52 52 H 1.09000 * 110.39517 * 54.67036 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1889 6 7 0.4208 -2.6188 1.0338 7 6 0.4276 -3.9519 1.0200 8 6 1.7203 -4.3644 1.1833 9 6 2.2023 -5.7497 1.2328 10 8 1.4418 -6.6677 0.9885 11 7 3.4874 -6.0052 1.5489 12 6 4.5477 -4.9847 1.8195 13 6 5.5096 -5.7446 2.7143 14 1 5.0868 -5.9033 3.7064 15 6 6.9942 -5.4503 2.7941 16 6 7.5763 -6.8461 3.1907 17 6 6.5556 -7.8928 2.6667 18 1 7.0453 -8.6244 2.0241 19 7 5.8991 -8.5568 3.7957 20 6 6.4355 -9.7010 4.3231 21 1 7.3427 -10.1138 3.9071 22 6 5.8138 -10.3299 5.3931 23 7 4.7084 -9.8266 5.9004 24 14 6.5458 -11.8904 6.1131 25 1 7.7811 -12.2465 5.3696 26 1 6.8764 -11.6678 7.5436 27 1 5.5624 -12.9971 5.9987 28 6 5.5662 -7.0861 1.8847 29 1 6.0119 -6.8568 0.9168 30 6 4.1073 -7.3564 1.6849 31 7 2.4834 -3.2175 1.2864 32 1 3.4448 -3.1736 1.4071 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5138 -0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9563 -0.8901 39 1 1.6767 1.9563 0.8899 40 1 1.6054 -0.2617 2.1370 41 1 3.1264 -0.6443 1.2951 42 1 -0.4346 -4.5916 0.9027 43 1 5.0357 -4.6787 0.8941 44 1 4.1316 -4.1234 2.3421 45 1 7.3802 -5.1273 1.8272 46 1 7.2036 -4.7070 3.5634 47 1 8.5436 -6.9999 2.7123 48 1 7.6760 -6.9181 4.2737 49 1 5.0844 -8.1860 4.1694 50 1 4.2738 -10.2662 6.6479 51 1 3.6958 -7.8779 2.5491 52 1 3.9480 -7.9404 0.7785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026268001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:16 Heat of formation + Delta-G solvation = 51.405976 kcal Electronic energy + Delta-G solvation = -30953.811673 eV Core-core repulsion = 26954.912685 eV Total energy + Delta-G solvation = -3998.898988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 27.97 seconds Orbital eigenvalues (eV) -42.50791 -40.51904 -38.47623 -36.64762 -35.46731 -33.46063 -32.94540 -31.01640 -30.90192 -29.45221 -28.66241 -27.34184 -27.10345 -25.68998 -23.96567 -23.31193 -21.92469 -21.48818 -20.88561 -20.06867 -19.69715 -18.91996 -17.71426 -17.47753 -16.29634 -16.26180 -15.93803 -15.38684 -15.11328 -14.85117 -14.65363 -14.46747 -14.28591 -14.10554 -13.71516 -13.63201 -13.40934 -12.97357 -12.85585 -12.73931 -12.60884 -12.55649 -12.21844 -11.99118 -11.55744 -11.54447 -11.36350 -11.17885 -11.06863 -11.03737 -10.91209 -10.79422 -10.56474 -10.39752 -10.34974 -10.21085 -10.10594 -9.98299 -9.71342 -9.64003 -8.97419 -8.83677 -8.50982 -7.02936 -5.81587 -3.11277 1.19295 2.55908 2.64655 2.85772 3.31833 3.40394 3.46056 3.48565 3.97328 4.04214 4.32603 4.45535 4.51948 4.54780 4.73324 4.75868 4.90651 4.97907 5.06763 5.10476 5.14216 5.21264 5.25969 5.33140 5.38131 5.46518 5.49937 5.51392 5.58700 5.65855 5.67173 5.72693 5.73789 5.79828 5.85432 5.88262 6.02783 6.04111 6.10579 6.18026 6.24929 6.27453 6.32500 6.43448 6.52274 6.54995 6.70777 6.95764 6.97758 7.40043 7.66600 7.73689 8.10032 8.36111 9.47822 10.03146 10.37575 11.40625 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.002324 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.162616 B =12045.846696 C =12823.935330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.035 4.035 5 C 0.234 3.766 6 N -0.487 5.487 7 C 0.066 3.934 8 C -0.078 4.078 9 C 0.607 3.393 10 O -0.524 6.524 11 N -0.622 5.622 12 C 0.106 3.894 13 C -0.124 4.124 14 H 0.097 0.903 15 C -0.098 4.098 16 C -0.143 4.143 17 C 0.195 3.805 18 H 0.059 0.941 19 N -0.719 5.719 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.119 4.119 29 H 0.068 0.932 30 C 0.134 3.866 31 N -0.555 5.555 32 H 0.421 0.579 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.184 0.816 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.088 0.912 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 22.229 -12.035 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.105 4.105 3 C -0.205 4.205 4 C -0.074 4.074 5 C -0.029 4.029 6 N -0.207 5.207 7 C -0.087 4.087 8 C -0.194 4.194 9 C 0.395 3.605 10 O -0.400 6.400 11 N -0.357 5.357 12 C -0.016 4.016 13 C -0.144 4.144 14 H 0.115 0.885 15 C -0.137 4.137 16 C -0.184 4.184 17 C 0.084 3.916 18 H 0.077 0.923 19 N -0.360 5.360 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.139 4.139 29 H 0.087 0.913 30 C 0.014 3.986 31 N -0.165 5.165 32 H 0.266 0.734 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.201 0.799 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.106 0.894 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.882 22.004 -12.227 25.243 hybrid contribution 1.366 -1.192 0.831 1.994 sum -0.516 20.812 -11.396 23.734 Atomic orbital electron populations 1.22084 0.93857 1.04928 1.00774 1.20990 0.97541 0.95457 0.96502 1.21859 1.00752 0.95701 1.02222 1.20250 1.01042 0.85323 1.00778 1.23396 0.85927 0.91647 1.01967 1.70098 1.19668 1.10037 1.20852 1.22684 0.95021 0.91069 0.99973 1.21170 0.93355 0.86615 1.18259 1.16484 0.80569 0.86127 0.77310 1.90873 1.54525 1.44478 1.50111 1.49747 1.08165 1.08627 1.69161 1.22015 0.89444 0.91217 0.98953 1.22647 0.95673 0.96443 0.99590 0.88501 1.21840 0.92557 0.98495 1.00781 1.23759 0.98824 0.93282 1.02562 1.19948 0.90602 0.91879 0.89192 0.92307 1.42448 1.29680 1.28490 1.35371 1.19278 1.06511 1.00596 1.10930 0.91046 1.24754 0.97576 0.99363 0.99099 1.69663 1.19592 1.41155 1.27426 0.86143 0.78145 0.83263 0.78761 1.20564 1.21943 1.21855 1.22070 0.94766 0.97690 0.99351 0.91313 1.20985 0.92132 0.82408 1.03079 1.44009 1.11329 1.06102 1.55058 0.73369 0.93032 0.93566 0.88922 0.91279 0.92768 0.92332 0.92390 0.88663 0.90248 0.79924 0.90720 0.91459 0.91945 0.91955 0.92762 0.90358 0.78143 0.93486 0.89377 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.92 37.16 0.33 -0.94 16 2 C -0.09 -0.57 2.91 -90.62 -0.26 -0.83 16 3 C -0.15 -0.75 9.19 37.15 0.34 -0.41 16 4 C -0.03 -0.23 5.32 -27.89 -0.15 -0.38 16 5 C 0.23 2.34 7.36 -155.62 -1.15 1.19 16 6 N -0.49 -5.94 8.51 -10.58 -0.09 -6.03 16 7 C 0.07 0.88 11.67 -17.47 -0.20 0.67 16 8 C -0.08 -1.05 6.87 -82.14 -0.56 -1.61 16 9 C 0.61 9.76 7.85 -12.81 -0.10 9.66 16 10 O -0.52 -10.29 17.28 5.21 0.09 -10.20 16 11 N -0.62 -9.04 3.42 -172.93 -0.59 -9.63 16 12 C 0.11 1.14 5.38 -2.92 -0.02 1.13 16 13 C -0.12 -1.60 3.08 -89.33 -0.28 -1.88 16 14 H 0.10 1.54 7.88 -51.93 -0.41 1.13 16 15 C -0.10 -1.14 6.63 -25.67 -0.17 -1.31 16 16 C -0.14 -2.18 6.69 -23.71 -0.16 -2.34 16 17 C 0.20 3.46 3.46 -68.33 -0.24 3.22 16 18 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 19 N -0.72 -16.64 4.80 -53.82 -0.26 -16.90 16 20 C -0.24 -6.39 9.96 -15.06 -0.15 -6.54 16 21 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 24 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C -0.12 -1.75 2.26 -91.24 -0.21 -1.96 16 29 H 0.07 0.89 7.99 -51.93 -0.42 0.47 16 30 C 0.13 2.21 6.67 -4.12 -0.03 2.18 16 31 N -0.55 -5.59 5.48 -7.02 -0.04 -5.62 16 32 H 0.42 3.22 5.35 -40.82 -0.22 3.01 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.94 5.49 -51.93 -0.28 0.65 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.62 5.49 -51.93 -0.29 0.33 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 1.40 7.96 -51.93 -0.41 0.99 16 49 H 0.38 9.62 6.72 -40.82 -0.27 9.34 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.09 1.75 7.22 -51.93 -0.37 1.38 16 52 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -32.08 405.38 -10.73 -42.81 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.56 Total: 9.87 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.09 Total: -0.56 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.25 Total: -65.00 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.08 -10.73 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026268001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.218 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.97 seconds