Wall clock time and date at job start Wed Apr 1 2020 06:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47056 * 2 1 4 4 C 1.53000 * 109.47057 * 120.00111 * 2 1 3 5 5 C 1.50696 * 109.47390 * 64.99882 * 4 2 1 6 6 N 1.30858 * 125.41814 * 304.97658 * 5 4 2 7 7 C 1.33324 * 109.68638 * 179.78235 * 6 5 4 8 8 C 1.36667 * 107.78331 * 0.37865 * 7 6 5 9 9 C 1.46761 * 126.84110 * 179.89286 * 8 7 6 10 10 O 1.21681 * 120.00252 * 7.43860 * 9 8 7 11 11 N 1.34783 * 119.99664 * 187.43716 * 9 8 7 12 12 C 1.49628 * 126.07264 * 357.42744 * 11 9 8 13 13 C 1.51774 * 102.36952 * 154.28557 * 12 11 9 14 14 H 1.09001 * 111.32166 * 288.41719 * 13 12 11 15 15 C 1.51557 * 123.68423 * 151.94655 * 13 12 11 16 16 C 1.56342 * 101.81217 * 208.01513 * 15 13 12 17 17 C 1.55314 * 105.74789 * 25.82428 * 16 15 13 18 18 H 1.08999 * 110.85399 * 125.34549 * 17 16 15 19 19 N 1.46499 * 109.87768 * 247.87204 * 17 16 15 20 20 C 1.36934 * 119.99883 * 269.59185 * 19 17 16 21 21 H 1.08007 * 120.00429 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00136 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99891 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46933 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46887 * 120.00350 * 24 22 20 27 27 H 1.48496 * 109.47318 * 240.00732 * 24 22 20 28 28 C 1.49708 * 104.32266 * 6.36583 * 17 16 15 29 29 H 1.09004 * 107.87890 * 78.30429 * 28 17 16 30 30 C 1.49286 * 126.07257 * 177.73771 * 11 9 8 31 31 N 1.34493 * 125.41923 * 124.99945 * 5 4 2 32 32 H 0.96995 * 126.47454 * 0.02562 * 31 5 4 33 33 H 1.08996 * 109.46785 * 300.00101 * 1 2 3 34 34 H 1.08996 * 109.47217 * 60.00143 * 1 2 3 35 35 H 1.09005 * 109.46806 * 180.02562 * 1 2 3 36 36 H 1.08996 * 109.46785 * 239.99899 * 2 1 3 37 37 H 1.08998 * 109.47489 * 180.02562 * 3 2 1 38 38 H 1.09007 * 109.47338 * 299.99687 * 3 2 1 39 39 H 1.08998 * 109.47284 * 59.99756 * 3 2 1 40 40 H 1.09005 * 109.46869 * 304.99757 * 4 2 1 41 41 H 1.09002 * 109.46997 * 185.00052 * 4 2 1 42 42 H 1.07993 * 126.10578 * 180.26968 * 7 6 5 43 43 H 1.09007 * 110.80149 * 272.62037 * 12 11 9 44 44 H 1.08999 * 110.80312 * 36.11902 * 12 11 9 45 45 H 1.09002 * 110.96174 * 326.14286 * 15 13 12 46 46 H 1.09000 * 110.96280 * 89.84869 * 15 13 12 47 47 H 1.09000 * 110.18514 * 144.51491 * 16 15 13 48 48 H 1.08996 * 110.18914 * 266.35881 * 16 15 13 49 49 H 0.96998 * 120.00278 * 89.60113 * 19 17 16 50 50 H 0.96996 * 119.99751 * 179.97438 * 23 22 20 51 51 H 1.09002 * 110.39659 * 292.39269 * 30 11 9 52 52 H 1.09000 * 110.39517 * 54.67036 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1889 6 7 0.4208 -2.6188 1.0338 7 6 0.4276 -3.9519 1.0200 8 6 1.7203 -4.3644 1.1833 9 6 2.2023 -5.7497 1.2328 10 8 1.4418 -6.6677 0.9885 11 7 3.4874 -6.0052 1.5489 12 6 4.5477 -4.9847 1.8195 13 6 5.5096 -5.7446 2.7143 14 1 5.0868 -5.9033 3.7064 15 6 6.9942 -5.4503 2.7941 16 6 7.5763 -6.8461 3.1907 17 6 6.5556 -7.8928 2.6667 18 1 7.0453 -8.6244 2.0241 19 7 5.8991 -8.5568 3.7957 20 6 6.4355 -9.7010 4.3231 21 1 7.3427 -10.1138 3.9071 22 6 5.8138 -10.3299 5.3931 23 7 4.7084 -9.8266 5.9004 24 14 6.5458 -11.8904 6.1131 25 1 7.7811 -12.2465 5.3696 26 1 6.8764 -11.6678 7.5436 27 1 5.5624 -12.9971 5.9987 28 6 5.5662 -7.0861 1.8847 29 1 6.0119 -6.8568 0.9168 30 6 4.1073 -7.3564 1.6849 31 7 2.4834 -3.2175 1.2864 32 1 3.4448 -3.1736 1.4071 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5138 -0.8900 37 1 3.1300 1.4425 -0.0005 38 1 1.6767 1.9563 -0.8901 39 1 1.6767 1.9563 0.8899 40 1 1.6054 -0.2617 2.1370 41 1 3.1264 -0.6443 1.2951 42 1 -0.4346 -4.5916 0.9027 43 1 5.0357 -4.6787 0.8941 44 1 4.1316 -4.1234 2.3421 45 1 7.3802 -5.1273 1.8272 46 1 7.2036 -4.7070 3.5634 47 1 8.5436 -6.9999 2.7123 48 1 7.6760 -6.9181 4.2737 49 1 5.0844 -8.1860 4.1694 50 1 4.2738 -10.2662 6.6479 51 1 3.6958 -7.8779 2.5491 52 1 3.9480 -7.9404 0.7785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026268001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:59 Heat of formation + Delta-G solvation = 31.988696 kcal Electronic energy + Delta-G solvation = -30954.653669 eV Core-core repulsion = 26954.912685 eV Total energy + Delta-G solvation = -3999.740984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.42568 -41.69799 -39.75331 -37.19783 -36.87129 -35.14460 -33.91412 -32.62350 -31.90506 -30.58794 -30.00473 -27.96068 -27.77153 -27.10050 -25.23270 -24.99329 -22.97908 -22.40073 -21.61130 -21.14476 -20.48438 -20.28751 -19.38718 -18.74577 -17.57034 -17.28339 -16.94797 -16.57217 -16.17653 -16.09901 -15.84062 -15.69681 -15.36439 -15.18910 -14.84661 -14.72652 -14.59212 -14.22765 -13.94347 -13.77443 -13.44507 -13.34993 -13.11504 -13.00317 -12.93898 -12.69927 -12.68624 -12.45933 -12.21809 -12.18046 -12.06266 -11.91108 -11.68628 -11.54963 -11.53834 -11.40092 -11.34346 -11.25992 -11.02761 -10.93030 -10.79175 -10.02945 -9.51612 -8.98588 -7.94166 -5.21360 0.17741 1.45309 1.46336 1.50802 1.55683 1.69969 1.90505 2.19688 2.55743 2.88971 3.22467 3.40352 3.43876 3.68837 3.75620 3.91765 4.00758 4.01850 4.04615 4.13002 4.16043 4.22263 4.34600 4.39548 4.43870 4.53735 4.60145 4.66050 4.66728 4.75272 4.80768 4.82665 4.86909 4.92626 4.95424 4.96944 5.02747 5.10247 5.17969 5.21343 5.22226 5.35271 5.37297 5.42856 5.43603 5.52660 5.55704 5.67899 5.77462 6.20554 6.27124 6.28506 6.81192 6.89530 7.34257 8.12373 8.32881 9.29416 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.002324 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.162616 B =12045.846696 C =12823.935330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.035 4.035 5 C 0.252 3.748 6 N -0.506 5.506 7 C 0.057 3.943 8 C -0.094 4.094 9 C 0.602 3.398 10 O -0.575 6.575 11 N -0.621 5.621 12 C 0.110 3.890 13 C -0.111 4.111 14 H 0.058 0.942 15 C -0.081 4.081 16 C -0.138 4.138 17 C 0.182 3.818 18 H 0.054 0.946 19 N -0.731 5.731 20 C -0.230 4.230 21 H 0.079 0.921 22 C -0.080 4.080 23 N -0.972 5.972 24 Si 0.967 3.033 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.300 1.300 28 C -0.121 4.121 29 H 0.105 0.895 30 C 0.138 3.862 31 N -0.541 5.541 32 H 0.435 0.565 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.179 0.821 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.247 0.753 51 H 0.039 0.961 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 25.690 -13.570 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.102 4.102 3 C -0.201 4.201 4 C -0.074 4.074 5 C -0.012 4.012 6 N -0.226 5.226 7 C -0.097 4.097 8 C -0.210 4.210 9 C 0.392 3.608 10 O -0.455 6.455 11 N -0.354 5.354 12 C -0.011 4.011 13 C -0.130 4.130 14 H 0.076 0.924 15 C -0.119 4.119 16 C -0.178 4.178 17 C 0.073 3.927 18 H 0.072 0.928 19 N -0.371 5.371 20 C -0.362 4.362 21 H 0.097 0.903 22 C -0.272 4.272 23 N -0.624 5.624 24 Si 0.798 3.202 25 H -0.187 1.187 26 H -0.224 1.224 27 H -0.228 1.228 28 C -0.141 4.141 29 H 0.123 0.877 30 C 0.016 3.984 31 N -0.152 5.152 32 H 0.282 0.718 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.196 0.804 43 H 0.135 0.865 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.063 0.937 49 H 0.203 0.797 50 H 0.056 0.944 51 H 0.058 0.942 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.062 25.514 -13.799 29.026 hybrid contribution 0.469 -2.199 1.235 2.565 sum 1.531 23.315 -12.563 26.529 Atomic orbital electron populations 1.22061 0.95267 1.03387 1.00993 1.20958 0.96301 0.96628 0.96289 1.21817 1.01596 0.94230 1.02445 1.20512 1.03271 0.82572 1.01050 1.24136 0.85179 0.92918 0.99014 1.70178 1.21212 1.09228 1.21972 1.22803 0.95216 0.91864 0.99797 1.20681 0.93771 0.86159 1.20344 1.16859 0.80526 0.86804 0.76575 1.90833 1.55908 1.46216 1.52556 1.49767 1.08550 1.08767 1.68351 1.22291 0.87826 0.90391 1.00564 1.22553 0.97127 0.95605 0.97713 0.92354 1.21796 0.90467 0.96289 1.03354 1.23539 0.99070 0.94760 1.00471 1.20309 0.91938 0.92668 0.87778 0.92763 1.42642 1.29543 1.28208 1.36742 1.19689 1.05840 1.00864 1.09805 0.90319 1.25518 0.98487 1.02715 1.00508 1.69830 1.21460 1.42784 1.28278 0.85145 0.77709 0.79610 0.77769 1.18705 1.22383 1.22788 1.21930 0.93016 0.98131 1.00980 0.87691 1.20752 0.93474 0.83477 1.00676 1.43852 1.11855 1.04856 1.54663 0.71770 0.92887 0.93356 0.91246 0.91833 0.91362 0.92430 0.91942 0.87693 0.86877 0.80407 0.86513 0.89326 0.87937 0.90382 0.90607 0.93703 0.79749 0.94395 0.94216 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.92 71.98 0.64 -1.66 16 2 C -0.08 -0.85 2.91 -10.79 -0.03 -0.88 16 3 C -0.14 -0.94 9.19 71.98 0.66 -0.28 16 4 C -0.04 -0.33 5.32 29.85 0.16 -0.17 16 5 C 0.25 4.38 7.36 138.20 1.02 5.40 16 6 N -0.51 -11.92 8.51 -187.40 -1.59 -13.51 16 7 C 0.06 1.54 11.67 84.10 0.98 2.52 16 8 C -0.09 -2.45 6.87 40.01 0.27 -2.18 16 9 C 0.60 19.77 7.85 86.47 0.68 20.45 16 10 O -0.58 -24.01 17.28 -4.29 -0.07 -24.08 16 11 N -0.62 -17.76 3.42 -819.23 -2.80 -20.56 16 12 C 0.11 1.98 5.38 85.37 0.46 2.44 16 13 C -0.11 -2.58 3.08 -9.96 -0.03 -2.62 16 14 H 0.06 1.85 7.88 -2.39 -0.02 1.83 16 15 C -0.08 -1.52 6.63 31.28 0.21 -1.31 16 16 C -0.14 -3.88 6.69 32.55 0.22 -3.66 16 17 C 0.18 6.33 3.46 44.73 0.15 6.49 16 18 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 19 N -0.73 -34.98 4.80 -324.18 -1.56 -36.53 16 20 C -0.23 -12.39 9.96 84.03 0.84 -11.55 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 23 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 24 Si 0.97 46.44 29.55 68.60 2.03 48.46 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 28 C -0.12 -3.40 2.26 -11.19 -0.03 -3.43 16 29 H 0.10 2.28 7.99 -2.38 -0.02 2.26 16 30 C 0.14 4.67 6.67 84.78 0.57 5.24 16 31 N -0.54 -9.37 5.48 -176.12 -0.97 -10.34 16 32 H 0.43 4.72 5.35 -92.71 -0.50 4.23 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 1.36 5.49 -2.38 -0.01 1.35 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.28 8.14 -2.39 -0.02 0.27 16 38 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.18 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.09 1.25 5.49 -2.39 -0.01 1.24 16 45 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.04 1.57 7.96 -2.39 -0.02 1.55 16 49 H 0.37 19.65 6.72 -92.71 -0.62 19.03 16 50 H 0.25 15.04 8.31 -92.71 -0.77 14.26 16 51 H 0.04 1.72 7.22 -2.39 -0.02 1.70 16 52 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -76.67 405.38 2.36 -74.31 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.19 Total: 31.65 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 7.24 Total: 10.65 kcal Atomic # 7 Polarization: -134.35 SS G_CDS: -6.64 Total: -140.99 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.07 Total: -24.08 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -76.67 2.36 -74.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026268001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.298 kcal (2) G-P(sol) polarization free energy of solvation -76.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds