Wall clock time and date at job start Wed Apr 1 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 C 1.52995 * 109.47169 * 240.00246 * 2 1 3 5 5 C 1.50696 * 109.47395 * 119.99931 * 2 1 3 6 6 N 1.35383 * 126.56339 * 2.19811 * 5 2 1 7 7 H 0.96995 * 126.13318 * 359.96032 * 6 5 2 8 8 C 1.35843 * 107.73146 * 179.97438 * 6 5 2 9 9 N 1.30177 * 109.00293 * 359.76147 * 8 6 5 10 10 C 1.35757 * 108.86575 * 0.38375 * 9 8 6 11 11 C 1.47324 * 126.23793 * 179.88308 * 10 9 8 12 12 O 1.21625 * 120.00358 * 174.07540 * 11 10 9 13 13 N 1.34778 * 119.99910 * 354.07660 * 11 10 9 14 14 C 1.46906 * 125.61738 * 0.02562 * 13 11 10 15 15 C 1.55306 * 107.95348 * 177.83912 * 14 13 11 16 16 H 1.09003 * 114.51263 * 216.19668 * 15 14 13 17 17 C 1.54836 * 107.61915 * 87.67421 * 15 14 13 18 18 C 1.54582 * 104.64048 * 215.13792 * 17 15 14 19 19 C 1.53866 * 106.26894 * 24.65070 * 18 17 15 20 20 H 1.09006 * 109.92202 * 238.70939 * 19 18 17 21 21 N 1.46496 * 109.92838 * 117.59822 * 19 18 17 22 22 C 1.36939 * 120.00312 * 86.53529 * 21 19 18 23 23 H 1.08002 * 119.99329 * 0.28036 * 22 21 19 24 24 C 1.38802 * 120.00475 * 180.28193 * 22 21 19 25 25 N 1.31623 * 120.00178 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00293 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47076 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47161 * 119.99864 * 26 24 22 29 29 H 1.48500 * 109.47221 * 239.99776 * 26 24 22 30 30 C 1.53711 * 107.20317 * 358.14988 * 19 18 17 31 31 H 1.09001 * 112.97142 * 214.98950 * 30 19 18 32 32 C 1.47343 * 125.61908 * 180.02562 * 13 11 10 33 33 H 1.08996 * 109.46911 * 299.99882 * 1 2 3 34 34 H 1.09000 * 109.47562 * 59.99797 * 1 2 3 35 35 H 1.08997 * 109.46767 * 180.02562 * 1 2 3 36 36 H 1.08996 * 109.47348 * 185.13775 * 3 2 1 37 37 H 1.09004 * 109.46940 * 305.13855 * 3 2 1 38 38 H 1.09000 * 109.46925 * 65.13344 * 3 2 1 39 39 H 1.09004 * 109.46975 * 295.00362 * 4 2 1 40 40 H 1.08995 * 109.47494 * 54.99951 * 4 2 1 41 41 H 1.09001 * 109.47535 * 175.00741 * 4 2 1 42 42 H 1.07999 * 125.50236 * 180.02562 * 8 6 5 43 43 H 1.09004 * 109.82691 * 297.99078 * 14 13 11 44 44 H 1.09004 * 109.81788 * 58.85247 * 14 13 11 45 45 H 1.09008 * 110.40237 * 334.03218 * 17 15 14 46 46 H 1.09002 * 110.40530 * 96.45457 * 17 15 14 47 47 H 1.09000 * 110.20705 * 265.43615 * 18 17 15 48 48 H 1.09004 * 110.12257 * 143.80838 * 18 17 15 49 49 H 0.96997 * 119.99837 * 266.82193 * 21 19 18 50 50 H 0.96994 * 120.00398 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.29714 * 85.00387 * 32 13 11 52 52 H 1.08996 * 110.37676 * 322.90409 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.2768 -1.3078 2.1818 7 1 0.3082 -1.3563 2.1959 8 6 2.1186 -1.8267 3.1131 9 7 3.3464 -1.5732 2.7629 10 6 3.3356 -0.8751 1.5987 11 6 4.5163 -0.3894 0.8634 12 8 4.3815 0.1327 -0.2268 13 7 5.7458 -0.5237 1.3989 14 6 6.0502 -1.1327 2.7006 15 6 7.5923 -1.1234 2.8846 16 1 7.9917 -1.9977 3.3988 17 6 7.9795 0.2313 3.5266 18 6 9.3457 0.5861 2.8963 19 6 9.4019 -0.1503 1.5464 20 1 10.2615 -0.8202 1.5242 21 7 9.4966 0.8193 0.4523 22 6 10.7209 1.2891 0.0577 23 1 11.6169 0.9413 0.5502 24 6 10.8102 2.2121 -0.9750 25 7 9.7182 2.6357 -1.5755 26 14 12.4804 2.8524 -1.5137 27 1 13.5417 2.2235 -0.6871 28 1 12.7022 2.5156 -2.9429 29 1 12.5251 4.3265 -1.3397 30 6 8.1025 -0.9612 1.4165 31 1 8.2440 -1.9118 0.9023 32 6 7.0061 -0.0839 0.7751 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 3.1261 1.4439 -0.0920 37 1 1.6035 1.9822 -0.8404 38 1 1.7537 1.9291 0.9324 39 1 1.7516 -1.7715 -1.2056 40 1 1.6054 -0.2617 -2.1369 41 1 3.1263 -0.6444 -1.2951 42 1 1.8179 -2.3666 3.9989 43 1 5.5731 -0.5612 3.4968 44 1 5.6928 -2.1623 2.7196 45 1 7.2381 0.9926 3.2839 46 1 8.0774 0.1257 4.6071 47 1 10.1570 0.2475 3.5408 48 1 9.4177 1.6622 2.7382 49 1 8.6918 1.1317 0.0101 50 1 9.7807 3.2804 -2.2974 51 1 7.1885 0.9685 0.9924 52 1 6.9735 -0.2468 -0.3022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026270394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:40 Heat of formation + Delta-G solvation = 44.289341 kcal Electronic energy + Delta-G solvation = -32147.166363 eV Core-core repulsion = 28147.958775 eV Total energy + Delta-G solvation = -3999.207588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.49883 -40.06473 -38.27362 -36.75531 -34.86781 -33.17712 -32.72669 -30.84289 -29.68418 -28.77610 -28.17046 -27.34947 -27.14830 -25.49825 -24.04024 -23.18174 -22.43404 -21.78451 -20.55427 -19.55999 -18.69997 -18.49703 -17.90250 -17.14121 -16.39830 -15.80665 -15.44654 -15.16879 -14.89590 -14.76868 -14.64900 -14.52127 -13.91192 -13.81399 -13.51673 -13.28457 -12.95159 -12.81168 -12.52520 -12.40991 -12.33009 -12.22424 -12.05051 -11.52439 -11.46450 -11.25025 -11.15651 -11.03554 -10.97246 -10.75896 -10.57245 -10.49457 -10.32475 -10.21949 -10.17163 -10.03130 -9.99234 -9.73326 -9.52851 -9.39669 -8.83308 -8.62093 -8.09998 -6.87849 -5.69112 -2.98301 1.53341 2.35936 2.72270 3.37498 3.48105 3.53552 3.55954 3.65044 4.22785 4.43443 4.58767 4.62913 4.72279 4.79026 4.88185 5.00628 5.08463 5.19468 5.26980 5.36164 5.49437 5.61163 5.64603 5.66360 5.68614 5.74049 5.77717 5.81655 5.84910 5.92667 6.00861 6.03553 6.04062 6.07893 6.14380 6.15292 6.24172 6.31971 6.41795 6.50825 6.53800 6.62534 6.64639 6.67252 6.79074 6.84075 6.91215 7.02447 7.20408 7.63555 7.78349 7.93250 8.49149 8.55812 9.60137 10.18324 10.51876 11.53232 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.003044 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.769670 B = 9196.341640 C =10711.957029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.012 3.988 3 C -0.158 4.158 4 C -0.157 4.157 5 C 0.079 3.921 6 N -0.565 5.565 7 H 0.421 0.579 8 C 0.176 3.824 9 N -0.455 5.455 10 C -0.052 4.052 11 C 0.607 3.393 12 O -0.528 6.528 13 N -0.598 5.598 14 C 0.123 3.877 15 C -0.105 4.105 16 H 0.101 0.899 17 C -0.114 4.114 18 C -0.145 4.145 19 C 0.182 3.818 20 H 0.052 0.948 21 N -0.726 5.726 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 C -0.106 4.106 31 H 0.085 0.915 32 C 0.118 3.882 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.212 0.788 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.386 0.614 50 H 0.254 0.746 51 H 0.082 0.918 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 -10.381 10.914 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.011 3.989 3 C -0.215 4.215 4 C -0.214 4.214 5 C -0.042 4.042 6 N -0.168 5.168 7 H 0.259 0.741 8 C -0.109 4.109 9 N -0.174 5.174 10 C -0.181 4.181 11 C 0.397 3.603 12 O -0.408 6.408 13 N -0.329 5.329 14 C 0.000 4.000 15 C -0.125 4.125 16 H 0.119 0.881 17 C -0.152 4.152 18 C -0.186 4.186 19 C 0.071 3.929 20 H 0.070 0.930 21 N -0.369 5.369 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 C -0.126 4.126 31 H 0.104 0.896 32 C -0.003 4.003 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.228 0.772 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.091 0.909 49 H 0.223 0.777 50 H 0.064 0.936 51 H 0.100 0.900 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.963 -10.280 10.700 24.874 hybrid contribution -0.746 0.584 -0.543 1.092 sum -20.709 -9.697 10.157 25.021 Atomic orbital electron populations 1.22031 0.94834 1.01459 1.02671 1.19090 0.94154 0.95825 0.89872 1.22228 1.06317 0.92272 1.00706 1.22228 1.06419 0.98130 0.94631 1.21176 0.90827 0.99091 0.93122 1.43157 1.10607 1.43463 1.19545 0.74078 1.25140 0.85004 1.03661 0.97054 1.70729 1.20535 1.14468 1.11700 1.20292 0.92309 1.08643 0.96825 1.16467 0.80702 0.78868 0.84298 1.90556 1.84424 1.45315 1.20470 1.48237 1.05786 1.58650 1.20275 1.22122 0.94721 0.98496 0.84688 1.23411 0.93681 0.98754 0.96615 0.88068 1.22473 0.98318 0.95691 0.98703 1.23051 0.95053 1.02349 0.98115 1.20678 0.93632 0.90361 0.88179 0.92979 1.42737 1.06848 1.49234 1.38052 1.19289 0.85870 1.18829 1.13030 0.91174 1.24738 0.96824 1.00215 0.99157 1.69672 1.26005 1.35450 1.26720 0.86159 0.83679 0.78425 0.78166 1.20636 1.21966 1.21986 1.23193 0.95792 0.98843 0.94728 0.89640 1.22187 0.80495 0.99166 0.98495 0.92810 0.91143 0.92897 0.87705 0.92272 0.93829 0.93955 0.92373 0.87523 0.77164 0.91410 0.91254 0.91870 0.92559 0.93106 0.90881 0.77701 0.93559 0.90009 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 7.57 37.16 0.28 -0.87 16 2 C 0.01 0.13 0.75 -155.66 -0.12 0.02 16 3 C -0.16 -1.99 8.19 37.16 0.30 -1.69 16 4 C -0.16 -1.92 8.25 37.16 0.31 -1.61 16 5 C 0.08 0.92 5.59 -81.68 -0.46 0.46 16 6 N -0.56 -4.42 5.83 -10.11 -0.06 -4.48 16 7 H 0.42 1.81 8.10 -40.82 -0.33 1.48 16 8 C 0.18 1.48 13.04 -89.91 -1.17 0.31 16 9 N -0.45 -5.69 8.79 -11.03 -0.10 -5.79 16 10 C -0.05 -0.74 6.65 -83.09 -0.55 -1.30 16 11 C 0.61 10.39 7.54 -12.56 -0.09 10.29 16 12 O -0.53 -9.92 10.09 5.26 0.05 -9.87 16 13 N -0.60 -10.02 3.32 -171.69 -0.57 -10.59 16 14 C 0.12 1.74 4.76 -2.60 -0.01 1.73 16 15 C -0.11 -1.46 4.34 -86.68 -0.38 -1.84 16 16 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.11 -1.69 5.62 -24.93 -0.14 -1.83 16 18 C -0.15 -2.56 6.62 -25.45 -0.17 -2.73 16 19 C 0.18 3.59 3.23 -67.11 -0.22 3.37 16 20 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 21 N -0.73 -18.07 4.79 -52.63 -0.25 -18.32 16 22 C -0.24 -6.63 9.95 -15.06 -0.15 -6.78 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 26 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 C -0.11 -1.79 3.98 -87.78 -0.35 -2.14 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 C 0.12 2.22 4.44 -2.86 -0.01 2.20 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.33 8.04 -51.93 -0.42 -0.09 16 36 H 0.10 1.68 4.54 -51.93 -0.24 1.45 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.11 1.66 4.65 -51.93 -0.24 1.42 16 42 H 0.21 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.07 0.96 7.58 -51.93 -0.39 0.57 16 44 H 0.07 0.96 7.46 -51.93 -0.39 0.57 16 45 H 0.06 1.02 7.31 -51.92 -0.38 0.64 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 49 H 0.39 10.24 5.28 -40.82 -0.22 10.02 16 50 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 51 H 0.08 1.72 6.35 -51.93 -0.33 1.39 16 52 H 0.08 1.69 8.03 -51.93 -0.42 1.27 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -33.21 391.72 -10.72 -43.92 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -8.37 Total: 12.23 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.02 Total: -2.88 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.25 Total: -66.94 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.05 Total: -9.87 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.21 -10.72 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026270394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.214 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds