Wall clock time and date at job start Wed Apr 1 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 C 1.52995 * 109.47169 * 240.00246 * 2 1 3 5 5 C 1.50696 * 109.47395 * 119.99931 * 2 1 3 6 6 N 1.35383 * 126.56339 * 2.19811 * 5 2 1 7 7 H 0.96995 * 126.13318 * 359.96032 * 6 5 2 8 8 C 1.35843 * 107.73146 * 179.97438 * 6 5 2 9 9 N 1.30177 * 109.00293 * 359.76147 * 8 6 5 10 10 C 1.35757 * 108.86575 * 0.38375 * 9 8 6 11 11 C 1.47324 * 126.23793 * 179.88308 * 10 9 8 12 12 O 1.21625 * 120.00358 * 174.07540 * 11 10 9 13 13 N 1.34778 * 119.99910 * 354.07660 * 11 10 9 14 14 C 1.46906 * 125.61738 * 0.02562 * 13 11 10 15 15 C 1.55306 * 107.95348 * 177.83912 * 14 13 11 16 16 H 1.09003 * 114.51263 * 216.19668 * 15 14 13 17 17 C 1.54836 * 107.61915 * 87.67421 * 15 14 13 18 18 C 1.54582 * 104.64048 * 215.13792 * 17 15 14 19 19 C 1.53866 * 106.26894 * 24.65070 * 18 17 15 20 20 H 1.09006 * 109.92202 * 238.70939 * 19 18 17 21 21 N 1.46496 * 109.92838 * 117.59822 * 19 18 17 22 22 C 1.36939 * 120.00312 * 86.53529 * 21 19 18 23 23 H 1.08002 * 119.99329 * 0.28036 * 22 21 19 24 24 C 1.38802 * 120.00475 * 180.28193 * 22 21 19 25 25 N 1.31623 * 120.00178 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00293 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47076 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47161 * 119.99864 * 26 24 22 29 29 H 1.48500 * 109.47221 * 239.99776 * 26 24 22 30 30 C 1.53711 * 107.20317 * 358.14988 * 19 18 17 31 31 H 1.09001 * 112.97142 * 214.98950 * 30 19 18 32 32 C 1.47343 * 125.61908 * 180.02562 * 13 11 10 33 33 H 1.08996 * 109.46911 * 299.99882 * 1 2 3 34 34 H 1.09000 * 109.47562 * 59.99797 * 1 2 3 35 35 H 1.08997 * 109.46767 * 180.02562 * 1 2 3 36 36 H 1.08996 * 109.47348 * 185.13775 * 3 2 1 37 37 H 1.09004 * 109.46940 * 305.13855 * 3 2 1 38 38 H 1.09000 * 109.46925 * 65.13344 * 3 2 1 39 39 H 1.09004 * 109.46975 * 295.00362 * 4 2 1 40 40 H 1.08995 * 109.47494 * 54.99951 * 4 2 1 41 41 H 1.09001 * 109.47535 * 175.00741 * 4 2 1 42 42 H 1.07999 * 125.50236 * 180.02562 * 8 6 5 43 43 H 1.09004 * 109.82691 * 297.99078 * 14 13 11 44 44 H 1.09004 * 109.81788 * 58.85247 * 14 13 11 45 45 H 1.09008 * 110.40237 * 334.03218 * 17 15 14 46 46 H 1.09002 * 110.40530 * 96.45457 * 17 15 14 47 47 H 1.09000 * 110.20705 * 265.43615 * 18 17 15 48 48 H 1.09004 * 110.12257 * 143.80838 * 18 17 15 49 49 H 0.96997 * 119.99837 * 266.82193 * 21 19 18 50 50 H 0.96994 * 120.00398 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.29714 * 85.00387 * 32 13 11 52 52 H 1.08996 * 110.37676 * 322.90409 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.2768 -1.3078 2.1818 7 1 0.3082 -1.3563 2.1959 8 6 2.1186 -1.8267 3.1131 9 7 3.3464 -1.5732 2.7629 10 6 3.3356 -0.8751 1.5987 11 6 4.5163 -0.3894 0.8634 12 8 4.3815 0.1327 -0.2268 13 7 5.7458 -0.5237 1.3989 14 6 6.0502 -1.1327 2.7006 15 6 7.5923 -1.1234 2.8846 16 1 7.9917 -1.9977 3.3988 17 6 7.9795 0.2313 3.5266 18 6 9.3457 0.5861 2.8963 19 6 9.4019 -0.1503 1.5464 20 1 10.2615 -0.8202 1.5242 21 7 9.4966 0.8193 0.4523 22 6 10.7209 1.2891 0.0577 23 1 11.6169 0.9413 0.5502 24 6 10.8102 2.2121 -0.9750 25 7 9.7182 2.6357 -1.5755 26 14 12.4804 2.8524 -1.5137 27 1 13.5417 2.2235 -0.6871 28 1 12.7022 2.5156 -2.9429 29 1 12.5251 4.3265 -1.3397 30 6 8.1025 -0.9612 1.4165 31 1 8.2440 -1.9118 0.9023 32 6 7.0061 -0.0839 0.7751 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 3.1261 1.4439 -0.0920 37 1 1.6035 1.9822 -0.8404 38 1 1.7537 1.9291 0.9324 39 1 1.7516 -1.7715 -1.2056 40 1 1.6054 -0.2617 -2.1369 41 1 3.1263 -0.6444 -1.2951 42 1 1.8179 -2.3666 3.9989 43 1 5.5731 -0.5612 3.4968 44 1 5.6928 -2.1623 2.7196 45 1 7.2381 0.9926 3.2839 46 1 8.0774 0.1257 4.6071 47 1 10.1570 0.2475 3.5408 48 1 9.4177 1.6622 2.7382 49 1 8.6918 1.1317 0.0101 50 1 9.7807 3.2804 -2.2974 51 1 7.1885 0.9685 0.9924 52 1 6.9735 -0.2468 -0.3022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026270394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:38 Heat of formation + Delta-G solvation = 23.934211 kcal Electronic energy + Delta-G solvation = -32148.049028 eV Core-core repulsion = 28147.958775 eV Total energy + Delta-G solvation = -4000.090253 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.32191 -41.40945 -39.56678 -37.69041 -36.46775 -34.87651 -33.59389 -32.68425 -30.85792 -29.92062 -29.68210 -28.15603 -28.10933 -27.04276 -25.51394 -24.91776 -23.40468 -22.69798 -21.46198 -20.90937 -20.22327 -19.73529 -19.06532 -18.73598 -17.58203 -17.19701 -16.68611 -16.52035 -16.25183 -15.88803 -15.64130 -15.53761 -15.41941 -15.07751 -14.73048 -14.50962 -14.27025 -14.19238 -13.90834 -13.65749 -13.44189 -13.23898 -13.17190 -13.08846 -13.01277 -12.61270 -12.42107 -12.36931 -12.25469 -12.09910 -11.93520 -11.92213 -11.72317 -11.58038 -11.52337 -11.46645 -11.25601 -11.03686 -10.95878 -10.90679 -10.65575 -9.64539 -9.31770 -8.95862 -7.90785 -5.19527 0.56127 1.46724 1.47972 1.53814 1.57949 1.90233 2.26932 2.53605 2.57799 3.34374 3.42987 3.43684 3.54498 3.67987 3.81607 3.83904 4.01468 4.15886 4.25401 4.31334 4.35388 4.37033 4.41105 4.43190 4.50232 4.62819 4.71135 4.72159 4.74419 4.78087 4.85794 4.87451 4.90133 4.99005 4.99873 5.05226 5.08905 5.12411 5.18737 5.21367 5.27133 5.31745 5.36255 5.47396 5.52441 5.54718 5.55885 5.67665 5.71314 6.31328 6.39995 6.66424 6.88195 7.31092 7.36499 8.15070 8.35995 9.33016 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.003044 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.769670 B = 9196.341640 C =10711.957029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.012 3.988 3 C -0.156 4.156 4 C -0.154 4.154 5 C 0.083 3.917 6 N -0.546 5.546 7 H 0.441 0.559 8 C 0.203 3.797 9 N -0.488 5.488 10 C -0.085 4.085 11 C 0.592 3.408 12 O -0.558 6.558 13 N -0.605 5.605 14 C 0.131 3.869 15 C -0.085 4.085 16 H 0.141 0.859 17 C -0.105 4.105 18 C -0.138 4.138 19 C 0.173 3.827 20 H 0.055 0.945 21 N -0.740 5.740 22 C -0.234 4.234 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.972 3.028 27 H -0.263 1.263 28 H -0.296 1.296 29 H -0.296 1.296 30 C -0.101 4.101 31 H 0.093 0.907 32 C 0.131 3.869 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.262 0.738 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.037 0.963 49 H 0.374 0.626 50 H 0.248 0.752 51 H 0.048 0.952 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.670 -12.808 14.161 29.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 C -0.213 4.213 4 C -0.212 4.212 5 C -0.041 4.041 6 N -0.151 5.151 7 H 0.284 0.716 8 C -0.083 4.083 9 N -0.207 5.207 10 C -0.212 4.212 11 C 0.384 3.616 12 O -0.440 6.440 13 N -0.336 5.336 14 C 0.009 3.991 15 C -0.104 4.104 16 H 0.158 0.842 17 C -0.143 4.143 18 C -0.178 4.178 19 C 0.064 3.936 20 H 0.073 0.927 21 N -0.382 5.382 22 C -0.366 4.366 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.802 3.198 27 H -0.187 1.187 28 H -0.224 1.224 29 H -0.224 1.224 30 C -0.121 4.121 31 H 0.111 0.889 32 C 0.008 3.992 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.278 0.722 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.056 0.944 49 H 0.208 0.792 50 H 0.057 0.943 51 H 0.066 0.934 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.821 -12.754 14.013 28.900 hybrid contribution -0.245 1.297 -1.508 2.004 sum -22.066 -11.456 12.505 27.831 Atomic orbital electron populations 1.21979 0.91460 1.03081 1.03733 1.19064 0.96691 0.94099 0.89101 1.22133 1.03773 0.94181 1.01243 1.22127 1.03959 0.99046 0.96020 1.21116 0.90471 0.98840 0.93696 1.43083 1.11595 1.42171 1.18221 0.71618 1.26116 0.83747 1.01183 0.97236 1.70643 1.23024 1.15700 1.11382 1.19961 0.91916 1.11043 0.98319 1.17133 0.81617 0.78499 0.84375 1.90572 1.85036 1.46418 1.21926 1.48335 1.05063 1.59022 1.21179 1.22169 0.94767 0.98829 0.83332 1.23502 0.93252 0.99607 0.93993 0.84150 1.22407 0.95722 0.95559 1.00597 1.22861 0.97839 0.99754 0.97323 1.20985 0.95122 0.89821 0.87657 0.92723 1.42984 1.05574 1.50233 1.39435 1.19717 0.87083 1.17671 1.12098 0.90316 1.25577 1.00284 1.01411 1.00039 1.69861 1.28292 1.36656 1.27630 0.85083 0.79952 0.77366 0.77448 1.18683 1.22389 1.22390 1.23113 0.93649 0.98017 0.97285 0.88889 1.21763 0.82887 0.97875 0.96707 0.91206 0.90750 0.90939 0.91670 0.91518 0.93316 0.93055 0.91601 0.91342 0.72240 0.90989 0.90131 0.93978 0.89050 0.90803 0.94432 0.79202 0.94308 0.93370 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 7.57 71.98 0.54 -1.24 16 2 C 0.01 0.26 0.75 -52.93 -0.04 0.22 16 3 C -0.16 -4.10 8.19 71.98 0.59 -3.51 16 4 C -0.15 -3.88 8.25 71.98 0.59 -3.29 16 5 C 0.08 1.80 5.59 41.59 0.23 2.03 16 6 N -0.55 -6.53 5.83 -185.91 -1.08 -7.62 16 7 H 0.44 1.68 8.10 -92.71 -0.75 0.93 16 8 C 0.20 2.56 13.04 180.10 2.35 4.91 16 9 N -0.49 -11.13 8.79 -188.82 -1.66 -12.79 16 10 C -0.09 -2.42 6.65 40.50 0.27 -2.15 16 11 C 0.59 21.64 7.54 86.63 0.65 22.29 16 12 O -0.56 -23.27 10.09 -4.11 -0.04 -23.31 16 13 N -0.60 -21.34 3.32 -815.36 -2.71 -24.05 16 14 C 0.13 3.58 4.76 87.09 0.41 3.99 16 15 C -0.08 -2.17 4.34 -8.24 -0.04 -2.21 16 16 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 17 C -0.11 -2.95 5.62 31.76 0.18 -2.77 16 18 C -0.14 -4.80 6.62 31.42 0.21 -4.60 16 19 C 0.17 6.90 3.23 45.52 0.15 7.05 16 20 H 0.05 2.15 8.09 -2.38 -0.02 2.13 16 21 N -0.74 -38.78 4.79 -320.43 -1.54 -40.31 16 22 C -0.23 -13.34 9.95 84.03 0.84 -12.51 16 23 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 24 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 25 N -0.97 -62.88 13.06 21.65 0.28 -62.59 16 26 Si 0.97 47.96 29.55 68.60 2.03 49.99 16 27 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 28 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 29 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 30 C -0.10 -3.46 3.98 -8.95 -0.04 -3.49 16 31 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 32 C 0.13 5.32 4.44 86.69 0.38 5.71 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.63 8.04 -2.39 -0.02 0.61 16 36 H 0.06 2.30 4.54 -2.40 -0.01 2.29 16 37 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 2.32 4.65 -2.39 -0.01 2.31 16 42 H 0.26 0.39 8.06 -2.91 -0.02 0.37 16 43 H 0.07 1.93 7.58 -2.38 -0.02 1.91 16 44 H 0.08 2.06 7.46 -2.39 -0.02 2.04 16 45 H 0.04 1.36 7.31 -2.38 -0.02 1.35 16 46 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.04 1.57 7.91 -2.38 -0.02 1.55 16 49 H 0.37 21.41 5.28 -92.71 -0.49 20.92 16 50 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 51 H 0.05 2.26 6.35 -2.39 -0.02 2.25 16 52 H 0.04 2.05 8.03 -2.39 -0.02 2.03 16 Total: -1.00 -80.25 391.72 2.74 -77.51 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.30 Total: 37.12 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 7.76 Total: 6.05 kcal Atomic # 7 Polarization: -140.65 SS G_CDS: -6.71 Total: -147.36 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -80.25 2.74 -77.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026270394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.446 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds