Wall clock time and date at job start Wed Apr 1 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47362 * 2 1 4 4 C 1.50700 * 109.47148 * 179.97438 * 3 2 1 5 5 C 1.38048 * 126.29273 * 270.00334 * 4 3 2 6 6 C 1.47422 * 126.41321 * 0.02562 * 5 4 3 7 7 O 1.21601 * 120.00540 * 9.28931 * 6 5 4 8 8 N 1.34777 * 119.99584 * 189.29049 * 6 5 4 9 9 C 1.47213 * 126.70545 * 359.81623 * 8 6 5 10 10 C 1.55736 * 106.44663 * 148.32493 * 9 8 6 11 11 H 1.09001 * 112.38888 * 258.03710 * 10 9 8 12 12 C 1.54330 * 109.24302 * 132.61908 * 10 9 8 13 13 C 1.55055 * 103.93790 * 223.04021 * 12 10 9 14 14 C 1.55053 * 102.11155 * 40.05693 * 13 12 10 15 15 H 1.09004 * 110.65672 * 78.61080 * 14 13 12 16 16 N 1.46500 * 110.53505 * 201.33402 * 14 13 12 17 17 C 1.36937 * 119.99385 * 269.51369 * 16 14 13 18 18 H 1.08005 * 120.00363 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99806 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00237 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00050 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47407 * 60.00225 * 21 19 17 23 23 H 1.48508 * 109.47449 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47360 * 300.00229 * 21 19 17 25 25 C 1.54328 * 103.93767 * 319.94335 * 14 13 12 26 26 H 1.08994 * 111.69172 * 262.79493 * 25 14 13 27 27 C 1.47219 * 126.69781 * 179.84299 * 8 6 5 28 28 C 1.41293 * 107.16732 * 179.76589 * 5 4 3 29 29 N 1.30446 * 108.02806 * 0.23467 * 28 5 4 30 30 N 1.34256 * 126.28958 * 90.18485 * 4 3 2 31 31 C 1.46497 * 125.75603 * 359.97438 * 30 4 3 32 32 H 1.08998 * 109.47123 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46963 * 300.00175 * 1 2 3 34 34 H 1.08998 * 109.46750 * 59.99817 * 1 2 3 35 35 H 1.08996 * 109.47409 * 240.00121 * 2 1 3 36 36 H 1.09007 * 109.47305 * 120.00048 * 2 1 3 37 37 H 1.09006 * 109.46960 * 60.00482 * 3 2 1 38 38 H 1.08994 * 109.47571 * 300.00282 * 3 2 1 39 39 H 1.09008 * 110.06976 * 267.97004 * 9 8 6 40 40 H 1.08999 * 110.07283 * 29.51295 * 9 8 6 41 41 H 1.09003 * 110.52888 * 341.65294 * 12 10 9 42 42 H 1.08998 * 110.53134 * 104.27824 * 12 10 9 43 43 H 1.09000 * 110.89933 * 281.85248 * 13 12 10 44 44 H 1.08992 * 110.90278 * 158.26223 * 13 12 10 45 45 H 0.96993 * 120.00654 * 89.51497 * 16 14 13 46 46 H 0.96991 * 120.00153 * 179.97438 * 20 19 17 47 47 H 1.09002 * 110.07704 * 92.03000 * 27 8 6 48 48 H 1.08994 * 110.12479 * 330.50896 * 27 8 6 49 49 H 1.07998 * 125.98757 * 180.28055 * 28 5 4 50 50 H 1.09003 * 109.47527 * 270.26742 * 31 30 4 51 51 H 1.09002 * 109.47049 * 30.26769 * 31 30 4 52 52 H 1.09001 * 109.47310 * 150.26973 * 31 30 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3637 1.4425 1.1137 6 6 3.9249 1.4421 2.5210 7 8 2.7518 1.2717 2.7922 8 7 4.8239 1.6307 3.5072 9 6 6.2716 1.8457 3.3488 10 6 6.7117 2.7677 4.5242 11 1 6.8469 3.8031 4.2115 12 6 7.9792 2.1829 5.1823 13 6 7.7140 2.3332 6.7026 14 6 6.2121 1.9629 6.8090 15 1 6.0793 0.8816 6.7742 16 7 5.6335 2.5112 8.0382 17 6 5.6405 1.7686 9.1887 18 1 6.0729 0.7789 9.1900 19 6 5.0927 2.2883 10.3535 20 7 4.5662 3.4946 10.3520 21 14 5.1029 1.2756 11.9231 22 1 6.5040 0.9562 12.2971 23 1 4.4638 2.0509 13.0166 24 1 4.3494 0.0149 11.7037 25 6 5.5769 2.6264 5.5689 26 1 5.1292 3.5899 5.8124 27 6 4.5501 1.6613 4.9534 28 6 5.6988 1.4369 0.6513 29 7 5.6744 1.4388 -0.6529 30 7 4.3421 1.4457 -1.0812 31 6 3.8911 1.4495 -2.4750 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 1.6768 1.9563 0.8901 38 1 1.6768 1.9564 -0.8899 39 1 6.7987 0.8927 3.3958 40 1 6.4747 2.3397 2.3987 41 1 8.0977 1.1323 4.9169 42 1 8.8606 2.7524 4.8875 43 1 7.8856 3.3594 7.0276 44 1 8.3276 1.6377 7.2750 45 1 5.2455 3.4002 8.0371 46 1 4.1832 3.8575 11.1658 47 1 4.6716 0.6649 5.3784 48 1 3.5389 2.0247 5.1360 49 1 6.5844 1.4312 1.2694 50 1 3.7750 0.4228 -2.8222 51 1 2.9346 1.9674 -2.5460 52 1 4.6281 1.9611 -3.0940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026303482.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:07 Heat of formation + Delta-G solvation = 53.165521 kcal Electronic energy + Delta-G solvation = -31039.515727 eV Core-core repulsion = 27040.693039 eV Total energy + Delta-G solvation = -3998.822688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.77476 -39.96704 -38.09513 -35.67392 -34.97370 -33.62950 -33.26782 -31.02077 -30.87533 -29.66850 -28.39749 -27.34360 -26.78317 -25.04780 -24.05080 -22.86460 -22.11196 -21.71659 -20.83488 -19.99174 -19.10473 -18.77979 -17.41337 -16.97501 -16.39938 -16.05122 -15.68130 -15.44450 -15.10252 -14.96144 -14.70879 -14.21931 -14.07260 -13.83656 -13.68428 -13.38479 -13.25320 -13.01492 -12.93486 -12.80890 -12.52878 -12.40888 -12.27237 -11.79628 -11.70323 -11.59939 -11.53245 -11.19036 -11.09231 -10.86066 -10.76157 -10.74416 -10.61633 -10.34655 -10.21174 -10.18002 -9.91940 -9.68640 -9.66023 -9.59861 -8.85993 -8.84669 -8.43104 -6.92390 -5.74489 -3.03053 1.32723 2.01770 2.06211 3.15079 3.45992 3.46299 3.50672 3.51347 4.15046 4.18602 4.54762 4.57043 4.62688 4.63979 4.67509 4.76141 4.80488 4.94546 4.96151 5.02296 5.04247 5.15745 5.27924 5.35924 5.45286 5.47179 5.48217 5.54129 5.59648 5.64164 5.68507 5.83186 5.84637 5.91940 5.98461 6.02741 6.03923 6.07049 6.12049 6.17959 6.27519 6.31722 6.39808 6.53367 6.57109 6.59314 6.71041 6.83056 7.06988 7.31489 7.72093 7.73935 8.37268 8.44149 9.55207 10.13002 10.46996 11.48036 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.002461 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.218471 B =11375.527029 C =12764.929676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.063 4.063 4 C 0.158 3.842 5 C -0.287 4.287 6 C 0.609 3.391 7 O -0.547 6.547 8 N -0.612 5.612 9 C 0.091 3.909 10 C -0.098 4.098 11 H 0.087 0.913 12 C -0.116 4.116 13 C -0.143 4.143 14 C 0.184 3.816 15 H 0.058 0.942 16 N -0.720 5.720 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.108 4.108 26 H 0.088 0.912 27 C 0.120 3.880 28 C 0.069 3.931 29 N -0.301 5.301 30 N -0.364 5.364 31 C 0.096 3.904 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.202 0.798 50 H 0.078 0.922 51 H 0.089 0.911 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -3.637 -27.540 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.101 4.101 4 C 0.026 3.974 5 C -0.301 4.301 6 C 0.399 3.601 7 O -0.426 6.426 8 N -0.344 5.344 9 C -0.032 4.032 10 C -0.117 4.117 11 H 0.105 0.895 12 C -0.155 4.155 13 C -0.184 4.184 14 C 0.073 3.927 15 H 0.076 0.924 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.128 4.128 26 H 0.106 0.894 27 C -0.002 4.002 28 C -0.118 4.118 29 N -0.120 5.120 30 N -0.143 5.143 31 C -0.045 4.045 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.218 0.782 50 H 0.097 0.903 51 H 0.108 0.892 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.081 -3.871 -28.546 28.808 hybrid contribution -0.348 -0.147 1.596 1.640 sum -0.429 -4.018 -26.950 27.252 Atomic orbital electron populations 1.21734 0.94960 1.01933 1.02049 1.21379 0.96306 0.94789 1.02458 1.20523 0.85674 0.99343 1.04601 1.21492 0.94580 0.95144 0.86215 1.19960 0.92816 1.23925 0.93448 1.16772 0.84320 0.76152 0.82853 1.90747 1.16718 1.51359 1.83750 1.48310 1.07924 1.71246 1.06928 1.23059 0.81269 0.99382 0.99495 1.22916 0.95833 0.98836 0.94156 0.89501 1.22471 0.95798 1.00098 0.97086 1.23293 1.00104 1.01764 0.93195 1.21250 0.90238 0.96039 0.85200 0.92401 1.42433 1.69969 1.18518 1.05063 1.19191 1.32141 0.98055 0.87655 0.91254 1.24733 1.01346 0.96793 0.98006 1.69644 1.44719 1.16020 1.27713 0.86292 0.77510 0.79206 0.83320 1.21322 1.21753 1.21267 1.22922 0.94618 0.99510 0.95796 0.89412 1.22152 1.00279 0.99793 0.77995 1.24743 0.97920 0.97218 0.91915 1.77204 0.95962 1.25403 1.13403 1.48342 1.04152 1.55533 1.06270 1.21948 1.01297 1.03783 0.77459 0.92495 0.91937 0.92970 0.92723 0.90646 0.87255 0.90894 0.90904 0.90164 0.91654 0.92182 0.91591 0.92179 0.78186 0.93473 0.91100 0.90313 0.78194 0.90323 0.89214 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.11 -1.00 5.92 -26.73 -0.16 -1.15 16 3 C -0.06 -0.59 4.82 -27.88 -0.13 -0.72 16 4 C 0.16 1.77 6.26 -81.60 -0.51 1.26 16 5 C -0.29 -3.72 6.05 -105.07 -0.64 -4.35 16 6 C 0.61 9.31 7.86 -12.52 -0.10 9.21 16 7 O -0.55 -9.75 15.22 5.28 0.08 -9.67 16 8 N -0.61 -8.75 3.32 -171.61 -0.57 -9.32 16 9 C 0.09 1.02 5.14 -2.19 -0.01 1.01 16 10 C -0.10 -1.22 4.01 -87.47 -0.35 -1.57 16 11 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 12 C -0.12 -1.42 6.37 -24.95 -0.16 -1.58 16 13 C -0.14 -2.35 6.60 -24.56 -0.16 -2.52 16 14 C 0.18 3.45 3.03 -66.15 -0.20 3.25 16 15 H 0.06 1.12 7.14 -51.93 -0.37 0.75 16 16 N -0.72 -17.51 5.21 -51.70 -0.27 -17.78 16 17 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 C -0.11 -1.72 3.55 -88.52 -0.31 -2.04 16 26 H 0.09 1.52 7.81 -51.93 -0.41 1.11 16 27 C 0.12 1.94 6.54 -3.24 -0.02 1.92 16 28 C 0.07 0.78 10.30 -16.98 -0.17 0.61 16 29 N -0.30 -3.53 12.50 30.86 0.39 -3.14 16 30 N -0.36 -3.64 3.98 -63.34 -0.25 -3.89 16 31 C 0.10 0.51 11.24 59.85 0.67 1.18 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.11 1.27 6.73 -51.93 -0.35 0.92 16 38 H 0.07 0.48 7.05 -51.93 -0.37 0.12 16 39 H 0.07 0.73 7.20 -51.92 -0.37 0.36 16 40 H 0.08 0.76 4.87 -51.93 -0.25 0.51 16 41 H 0.06 0.73 7.22 -51.93 -0.37 0.36 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.38 10.01 7.61 -40.82 -0.31 9.70 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.07 1.18 7.13 -51.93 -0.37 0.81 16 48 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 49 H 0.20 1.80 4.96 -52.49 -0.26 1.54 16 50 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.09 0.29 7.02 -51.93 -0.36 -0.07 16 52 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 405.61 15.07 6.11 6.11 Total: -1.00 -33.54 405.61 -9.36 -42.90 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.41 Total: 8.17 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.14 Total: -3.41 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.02 Total: -61.45 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.54 -9.36 -42.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026303482.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.063 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds