Wall clock time and date at job start Wed Apr 1 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47513 * 2 1 4 4 C 1.50696 * 109.47035 * 120.00431 * 2 1 3 5 5 N 1.30499 * 125.64738 * 300.02153 * 4 2 1 6 6 C 1.34133 * 109.25768 * 180.02562 * 5 4 2 7 7 C 1.34664 * 108.01743 * 359.97438 * 6 5 4 8 8 N 1.35041 * 125.65561 * 119.71377 * 4 2 1 9 9 C 1.46506 * 126.39202 * 359.97438 * 8 4 2 10 10 C 1.50700 * 109.46766 * 85.00640 * 9 8 4 11 11 O 1.21276 * 120.00292 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99957 * 180.02562 * 10 9 8 13 13 C 1.48356 * 128.18986 * 359.67295 * 12 10 9 14 14 C 1.54910 * 104.06644 * 138.26742 * 13 12 10 15 15 H 1.09004 * 112.54772 * 263.88836 * 14 13 12 16 16 C 1.53561 * 108.94321 * 139.48916 * 14 13 12 17 17 C 1.53955 * 106.03195 * 229.12279 * 16 14 13 18 18 C 1.53964 * 104.89060 * 29.55413 * 17 16 14 19 19 H 1.08992 * 110.19762 * 211.26995 * 18 17 16 20 20 N 1.46498 * 110.13726 * 89.58009 * 18 17 16 21 21 C 1.36942 * 119.99675 * 138.15030 * 20 18 17 22 22 H 1.07998 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99804 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00327 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00068 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.46879 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47601 * 119.99677 * 25 23 21 28 28 H 1.48497 * 109.47032 * 240.00101 * 25 23 21 29 29 C 1.53558 * 106.02873 * 330.44234 * 18 17 16 30 30 H 1.08996 * 111.66562 * 254.93981 * 29 18 17 31 31 C 1.48345 * 128.19690 * 179.97438 * 12 10 9 32 32 H 1.09005 * 109.47017 * 300.00558 * 1 2 3 33 33 H 1.08994 * 109.47711 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46922 * 59.99841 * 1 2 3 35 35 H 1.09004 * 109.46574 * 239.99740 * 2 1 3 36 36 H 1.08995 * 109.47273 * 60.00221 * 3 2 1 37 37 H 1.09007 * 109.47474 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.47156 * 300.00015 * 3 2 1 39 39 H 1.08003 * 125.98902 * 180.02562 * 6 5 4 40 40 H 1.07997 * 126.58859 * 180.02562 * 7 6 5 41 41 H 1.08996 * 109.46753 * 204.99882 * 9 8 4 42 42 H 1.09000 * 109.47417 * 325.00031 * 9 8 4 43 43 H 1.08997 * 110.46596 * 256.99687 * 13 12 10 44 44 H 1.08993 * 110.46960 * 19.60202 * 13 12 10 45 45 H 1.08993 * 110.14243 * 109.97471 * 16 14 13 46 46 H 1.09007 * 110.19533 * 348.28744 * 16 14 13 47 47 H 1.09002 * 110.35686 * 270.70697 * 17 16 14 48 48 H 1.08992 * 110.45065 * 148.45668 * 17 16 14 49 49 H 0.97002 * 120.00501 * 318.15517 * 20 18 17 50 50 H 0.96995 * 120.00424 * 180.02562 * 24 23 21 51 51 H 1.09010 * 110.46794 * 340.39705 * 31 12 10 52 52 H 1.08998 * 110.47411 * 102.99577 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7856 -0.3624 2.4636 6 6 2.3935 -1.2209 3.2958 7 6 3.0410 -2.1362 2.5498 8 7 2.8074 -1.8162 1.2395 9 6 3.3078 -2.5367 0.0661 10 6 4.5813 -1.8903 -0.4148 11 8 5.0268 -0.9228 0.1651 12 7 5.2247 -2.3867 -1.4901 13 6 4.8496 -3.5541 -2.3252 14 6 5.1235 -3.0831 -3.7754 15 1 4.2279 -2.7042 -4.2679 16 6 5.7578 -4.2385 -4.5634 17 6 6.9948 -3.6469 -5.2635 18 6 7.4670 -2.5101 -4.3387 19 1 7.9267 -1.7145 -4.9249 20 7 8.4205 -3.0251 -3.3529 21 6 9.5405 -2.3016 -3.0408 22 1 9.7207 -1.3513 -3.5212 23 6 10.4442 -2.7898 -2.1071 24 7 10.2249 -3.9482 -1.5221 25 14 11.9718 -1.8027 -1.6809 26 1 11.9853 -0.5455 -2.4715 27 1 11.9623 -1.4767 -0.2322 28 1 13.1823 -2.6010 -2.0008 29 6 6.2076 -1.9868 -3.6330 30 1 5.8866 -1.0284 -4.0410 31 6 6.4786 -1.8989 -2.1149 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 -0.8900 35 1 1.8932 -0.5139 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 3.1301 1.4424 -0.0005 38 1 1.6768 1.9562 -0.8900 39 1 2.3674 -1.1851 4.3749 40 1 3.6279 -2.9659 2.9151 41 1 3.5060 -3.5745 0.3343 42 1 2.5609 -2.5026 -0.7270 43 1 5.4707 -4.4150 -2.0779 44 1 3.7945 -3.7936 -2.1937 45 1 5.0539 -4.6192 -5.3033 46 1 6.0570 -5.0373 -3.8847 47 1 6.7235 -3.2513 -6.2423 48 1 7.7737 -4.4027 -5.3634 49 1 8.2585 -3.8785 -2.9212 50 1 10.8562 -4.2892 -0.8694 51 1 6.6743 -0.8674 -1.8218 52 1 7.3162 -2.5398 -1.8395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026367255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:19 Heat of formation + Delta-G solvation = 47.498232 kcal Electronic energy + Delta-G solvation = -31839.694760 eV Core-core repulsion = 27840.626320 eV Total energy + Delta-G solvation = -3999.068440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.18984 -40.18255 -38.43730 -35.43312 -35.07406 -33.97567 -33.51952 -31.02993 -29.81948 -28.81986 -28.35506 -27.48821 -27.23223 -25.21748 -23.72725 -23.26829 -22.85647 -21.31583 -20.01782 -19.63381 -18.81500 -18.59524 -17.61643 -17.36992 -17.01504 -15.90987 -15.71246 -15.16014 -15.01222 -14.67884 -14.61663 -14.34997 -14.08613 -13.69360 -13.60749 -13.38568 -13.33769 -12.98074 -12.91098 -12.80857 -12.59122 -12.23679 -12.19201 -11.90507 -11.59272 -11.36634 -11.27880 -11.08822 -11.05550 -10.93101 -10.83253 -10.58247 -10.32923 -10.31127 -10.20184 -10.12981 -9.99661 -9.92346 -9.71181 -9.32649 -9.09985 -8.40344 -8.30070 -7.05120 -5.90002 -3.19746 1.97309 2.58798 2.62181 3.18981 3.24182 3.38140 3.45061 3.46510 4.28317 4.34194 4.46867 4.50197 4.58413 4.62240 4.75246 4.89916 4.92165 4.98061 5.03140 5.17025 5.29677 5.45549 5.47127 5.52397 5.54235 5.54924 5.61508 5.65977 5.75821 5.78239 5.78972 5.85753 5.91771 5.96000 5.99636 6.05765 6.10346 6.24145 6.24776 6.31934 6.32923 6.43087 6.44675 6.58034 6.76965 6.79700 6.82470 7.11510 7.14116 7.62474 7.74054 8.14613 8.22167 8.28060 9.40490 9.93352 10.27895 11.31607 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003145 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.849795 B = 8901.236462 C =10082.522829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.139 4.139 4 C 0.227 3.773 5 N -0.488 5.488 6 C -0.030 4.030 7 C -0.050 4.050 8 N -0.440 5.440 9 C 0.088 3.912 10 C 0.511 3.489 11 O -0.525 6.525 12 N -0.618 5.618 13 C 0.104 3.896 14 C -0.098 4.098 15 H 0.078 0.922 16 C -0.113 4.113 17 C -0.134 4.134 18 C 0.177 3.823 19 H 0.063 0.937 20 N -0.711 5.711 21 C -0.248 4.248 22 H 0.073 0.927 23 C -0.007 4.007 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.124 4.124 30 H 0.072 0.928 31 C 0.104 3.896 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.066 0.934 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.294 -0.578 -2.299 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.197 4.197 4 C -0.036 4.036 5 N -0.206 5.206 6 C -0.177 4.177 7 C -0.182 4.182 8 N -0.122 5.122 9 C -0.039 4.039 10 C 0.296 3.704 11 O -0.401 6.401 12 N -0.352 5.352 13 C -0.019 4.019 14 C -0.118 4.118 15 H 0.097 0.903 16 C -0.151 4.151 17 C -0.173 4.173 18 C 0.065 3.935 19 H 0.082 0.918 20 N -0.351 5.351 21 C -0.379 4.379 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C -0.146 4.146 30 H 0.090 0.910 31 C -0.017 4.017 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.186 0.814 40 H 0.189 0.811 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.219 0.781 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.339 0.691 -1.704 19.426 hybrid contribution 1.485 -0.725 0.241 1.671 sum -17.853 -0.034 -1.463 17.913 Atomic orbital electron populations 1.21785 0.93183 1.01931 1.02721 1.19509 0.96259 0.96186 0.90763 1.21751 1.01889 0.93789 1.02258 1.23105 0.96693 0.88173 0.95619 1.70150 1.24737 1.26826 0.98913 1.22190 1.01572 0.94496 0.99437 1.22644 1.07757 1.05200 0.82576 1.44859 1.38359 1.23055 1.05916 1.21660 0.96168 0.97485 0.88618 1.20076 0.85391 0.84685 0.80238 1.90785 1.67100 1.26817 1.55438 1.49272 1.27071 1.30836 1.27980 1.22847 0.99785 0.89073 0.90200 1.22602 0.98655 0.96421 0.94089 0.90315 1.22110 0.97149 0.97040 0.98795 1.22616 0.97066 0.99395 0.98234 1.20718 0.88709 0.94262 0.89813 0.91844 1.42537 1.22523 1.23733 1.46290 1.19317 0.98196 1.01545 1.18822 0.90923 1.24725 0.99108 0.97100 0.99442 1.69642 1.37682 1.19316 1.31063 0.86161 0.83097 0.79184 0.78015 1.20454 1.21784 1.21834 1.23231 0.97167 0.97534 0.96705 0.91006 1.23261 0.85807 1.02351 0.90238 0.91293 0.92917 0.91915 0.90721 0.91492 0.92076 0.92105 0.81440 0.81094 0.86231 0.86617 0.90046 0.91458 0.92391 0.91430 0.92335 0.90948 0.78054 0.93419 0.91576 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 2 C -0.01 -0.08 3.25 -91.78 -0.30 -0.38 16 3 C -0.14 -1.67 9.17 37.15 0.34 -1.33 16 4 C 0.23 3.22 6.40 -155.42 -0.99 2.23 16 5 N -0.49 -7.56 11.25 -10.82 -0.12 -7.68 16 6 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 7 C -0.05 -0.66 11.58 -16.56 -0.19 -0.85 16 8 N -0.44 -5.95 2.24 -115.19 -0.26 -6.20 16 9 C 0.09 0.99 5.15 -5.19 -0.03 0.96 16 10 C 0.51 8.08 7.99 -10.98 -0.09 7.99 16 11 O -0.53 -10.88 16.70 5.56 0.09 -10.78 16 12 N -0.62 -9.39 3.31 -168.60 -0.56 -9.95 16 13 C 0.10 1.21 6.46 -2.01 -0.01 1.20 16 14 C -0.10 -1.17 3.95 -88.35 -0.35 -1.51 16 15 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 16 C -0.11 -1.33 6.37 -25.94 -0.17 -1.49 16 17 C -0.13 -1.89 6.50 -25.73 -0.17 -2.05 16 18 C 0.18 3.03 3.54 -67.14 -0.24 2.80 16 19 H 0.06 1.14 7.90 -51.93 -0.41 0.73 16 20 N -0.71 -15.52 2.88 -52.66 -0.15 -15.67 16 21 C -0.25 -6.30 9.45 -15.06 -0.14 -6.45 16 22 H 0.07 1.83 7.74 -52.49 -0.41 1.43 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16 25 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 C -0.12 -1.89 3.93 -88.59 -0.35 -2.24 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 C 0.10 1.91 6.27 -2.26 -0.01 1.90 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.80 6.85 -51.93 -0.36 0.44 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 40 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.12 0.97 7.14 -51.93 -0.37 0.60 16 43 H 0.08 1.01 7.22 -51.93 -0.37 0.63 16 44 H 0.07 0.55 7.32 -51.93 -0.38 0.17 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.83 7.14 -51.92 -0.37 0.46 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 49 H 0.38 8.97 7.63 -40.82 -0.31 8.66 16 50 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.07 1.37 7.88 -51.92 -0.41 0.96 16 52 H 0.13 2.93 5.19 -51.93 -0.27 2.66 16 LS Contribution 410.94 15.07 6.19 6.19 Total: -1.00 -32.61 410.94 -10.47 -43.08 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -8.71 Total: 10.93 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.66 Total: -1.08 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -0.36 Total: -65.12 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.61 -10.47 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026367255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.579 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds