Wall clock time and date at job start Wed Apr 1 2020 05:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47513 * 2 1 4 4 C 1.50696 * 109.47035 * 120.00431 * 2 1 3 5 5 N 1.30499 * 125.64738 * 300.02153 * 4 2 1 6 6 C 1.34133 * 109.25768 * 180.02562 * 5 4 2 7 7 C 1.34664 * 108.01743 * 359.97438 * 6 5 4 8 8 N 1.35041 * 125.65561 * 119.71377 * 4 2 1 9 9 C 1.46506 * 126.39202 * 359.97438 * 8 4 2 10 10 C 1.50700 * 109.46766 * 85.00640 * 9 8 4 11 11 O 1.21276 * 120.00292 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99957 * 180.02562 * 10 9 8 13 13 C 1.48356 * 128.18986 * 359.67295 * 12 10 9 14 14 C 1.54910 * 104.06644 * 138.26742 * 13 12 10 15 15 H 1.09004 * 112.54772 * 263.88836 * 14 13 12 16 16 C 1.53561 * 108.94321 * 139.48916 * 14 13 12 17 17 C 1.53955 * 106.03195 * 229.12279 * 16 14 13 18 18 C 1.53964 * 104.89060 * 29.55413 * 17 16 14 19 19 H 1.08992 * 110.19762 * 211.26995 * 18 17 16 20 20 N 1.46498 * 110.13726 * 89.58009 * 18 17 16 21 21 C 1.36942 * 119.99675 * 138.15030 * 20 18 17 22 22 H 1.07998 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99804 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00327 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00068 * 180.02562 * 23 21 20 26 26 H 1.48510 * 109.46879 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47601 * 119.99677 * 25 23 21 28 28 H 1.48497 * 109.47032 * 240.00101 * 25 23 21 29 29 C 1.53558 * 106.02873 * 330.44234 * 18 17 16 30 30 H 1.08996 * 111.66562 * 254.93981 * 29 18 17 31 31 C 1.48345 * 128.19690 * 179.97438 * 12 10 9 32 32 H 1.09005 * 109.47017 * 300.00558 * 1 2 3 33 33 H 1.08994 * 109.47711 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46922 * 59.99841 * 1 2 3 35 35 H 1.09004 * 109.46574 * 239.99740 * 2 1 3 36 36 H 1.08995 * 109.47273 * 60.00221 * 3 2 1 37 37 H 1.09007 * 109.47474 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.47156 * 300.00015 * 3 2 1 39 39 H 1.08003 * 125.98902 * 180.02562 * 6 5 4 40 40 H 1.07997 * 126.58859 * 180.02562 * 7 6 5 41 41 H 1.08996 * 109.46753 * 204.99882 * 9 8 4 42 42 H 1.09000 * 109.47417 * 325.00031 * 9 8 4 43 43 H 1.08997 * 110.46596 * 256.99687 * 13 12 10 44 44 H 1.08993 * 110.46960 * 19.60202 * 13 12 10 45 45 H 1.08993 * 110.14243 * 109.97471 * 16 14 13 46 46 H 1.09007 * 110.19533 * 348.28744 * 16 14 13 47 47 H 1.09002 * 110.35686 * 270.70697 * 17 16 14 48 48 H 1.08992 * 110.45065 * 148.45668 * 17 16 14 49 49 H 0.97002 * 120.00501 * 318.15517 * 20 18 17 50 50 H 0.96995 * 120.00424 * 180.02562 * 24 23 21 51 51 H 1.09010 * 110.46794 * 340.39705 * 31 12 10 52 52 H 1.08998 * 110.47411 * 102.99577 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7856 -0.3624 2.4636 6 6 2.3935 -1.2209 3.2958 7 6 3.0410 -2.1362 2.5498 8 7 2.8074 -1.8162 1.2395 9 6 3.3078 -2.5367 0.0661 10 6 4.5813 -1.8903 -0.4148 11 8 5.0268 -0.9228 0.1651 12 7 5.2247 -2.3867 -1.4901 13 6 4.8496 -3.5541 -2.3252 14 6 5.1235 -3.0831 -3.7754 15 1 4.2279 -2.7042 -4.2679 16 6 5.7578 -4.2385 -4.5634 17 6 6.9948 -3.6469 -5.2635 18 6 7.4670 -2.5101 -4.3387 19 1 7.9267 -1.7145 -4.9249 20 7 8.4205 -3.0251 -3.3529 21 6 9.5405 -2.3016 -3.0408 22 1 9.7207 -1.3513 -3.5212 23 6 10.4442 -2.7898 -2.1071 24 7 10.2249 -3.9482 -1.5221 25 14 11.9718 -1.8027 -1.6809 26 1 11.9853 -0.5455 -2.4715 27 1 11.9623 -1.4767 -0.2322 28 1 13.1823 -2.6010 -2.0008 29 6 6.2076 -1.9868 -3.6330 30 1 5.8866 -1.0284 -4.0410 31 6 6.4786 -1.8989 -2.1149 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5139 -0.8900 35 1 1.8932 -0.5139 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 3.1301 1.4424 -0.0005 38 1 1.6768 1.9562 -0.8900 39 1 2.3674 -1.1851 4.3749 40 1 3.6279 -2.9659 2.9151 41 1 3.5060 -3.5745 0.3343 42 1 2.5609 -2.5026 -0.7270 43 1 5.4707 -4.4150 -2.0779 44 1 3.7945 -3.7936 -2.1937 45 1 5.0539 -4.6192 -5.3033 46 1 6.0570 -5.0373 -3.8847 47 1 6.7235 -3.2513 -6.2423 48 1 7.7737 -4.4027 -5.3634 49 1 8.2585 -3.8785 -2.9212 50 1 10.8562 -4.2892 -0.8694 51 1 6.6743 -0.8674 -1.8218 52 1 7.3162 -2.5398 -1.8395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026367255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:18 Heat of formation + Delta-G solvation = 28.463232 kcal Electronic energy + Delta-G solvation = -31840.520179 eV Core-core repulsion = 27840.626320 eV Total energy + Delta-G solvation = -3999.893860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.18672 -41.39892 -39.71943 -36.52757 -36.30177 -35.12057 -34.99462 -32.69354 -31.04604 -29.82821 -29.74645 -28.51976 -28.06261 -26.61666 -25.24905 -24.66586 -23.79178 -22.31857 -21.13482 -20.77658 -19.97636 -19.73643 -19.41023 -18.48861 -18.10643 -17.15748 -16.85624 -16.63507 -16.24973 -15.94301 -15.74527 -15.48808 -15.24941 -15.05143 -14.93843 -14.60936 -14.33658 -14.12693 -14.08224 -13.85979 -13.77236 -13.31628 -13.17597 -13.07462 -13.01901 -12.88624 -12.42884 -12.35638 -12.21716 -12.17030 -12.14961 -11.93010 -11.91266 -11.54083 -11.42330 -11.39502 -11.34186 -11.23860 -10.97773 -10.96741 -10.46105 -9.78162 -9.30651 -8.89327 -7.97311 -5.21941 0.93755 1.41480 1.43935 1.44894 1.51315 1.64572 2.09889 2.18641 2.52878 3.28687 3.37807 3.38771 3.56381 3.65419 3.69557 3.78462 3.89511 3.97542 4.09639 4.17634 4.19095 4.32215 4.39225 4.41411 4.53114 4.56059 4.59092 4.67100 4.70363 4.77329 4.78690 4.84175 4.87115 4.92464 4.94386 5.03696 5.06541 5.11718 5.22474 5.24654 5.26137 5.31114 5.40611 5.45174 5.49343 5.51642 5.61748 5.68078 5.82543 6.16109 6.26469 6.57232 7.01006 7.13172 7.34209 8.10326 8.32233 9.25077 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003145 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.849795 B = 8901.236462 C =10082.522829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.009 4.009 3 C -0.133 4.133 4 C 0.215 3.785 5 N -0.520 5.520 6 C -0.052 4.052 7 C -0.056 4.056 8 N -0.446 5.446 9 C 0.095 3.905 10 C 0.504 3.496 11 O -0.587 6.587 12 N -0.615 5.615 13 C 0.101 3.899 14 C -0.085 4.085 15 H 0.115 0.885 16 C -0.106 4.106 17 C -0.127 4.127 18 C 0.166 3.834 19 H 0.050 0.950 20 N -0.716 5.716 21 C -0.232 4.232 22 H 0.071 0.929 23 C -0.067 4.067 24 N -0.961 5.961 25 Si 0.954 3.046 26 H -0.269 1.269 27 H -0.304 1.304 28 H -0.292 1.292 29 C -0.116 4.116 30 H 0.080 0.920 31 C 0.108 3.892 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.087 0.913 39 H 0.184 0.816 40 H 0.194 0.806 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.073 0.927 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.376 0.624 50 H 0.248 0.752 51 H 0.025 0.975 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.566 -1.822 -4.596 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.029 4.029 3 C -0.192 4.192 4 C -0.048 4.048 5 N -0.239 5.239 6 C -0.198 4.198 7 C -0.188 4.188 8 N -0.128 5.128 9 C -0.031 4.031 10 C 0.293 3.707 11 O -0.467 6.467 12 N -0.348 5.348 13 C -0.021 4.021 14 C -0.105 4.105 15 H 0.133 0.867 16 C -0.143 4.143 17 C -0.166 4.166 18 C 0.056 3.944 19 H 0.069 0.931 20 N -0.355 5.355 21 C -0.364 4.364 22 H 0.089 0.911 23 C -0.260 4.260 24 N -0.612 5.612 25 Si 0.785 3.215 26 H -0.194 1.194 27 H -0.232 1.232 28 H -0.219 1.219 29 C -0.138 4.138 30 H 0.098 0.902 31 C -0.015 4.015 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.105 0.895 39 H 0.201 0.799 40 H 0.211 0.789 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.091 0.909 44 H 0.138 0.862 45 H 0.112 0.888 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.071 0.929 49 H 0.210 0.790 50 H 0.057 0.943 51 H 0.044 0.956 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.651 -0.561 -4.065 23.019 hybrid contribution 2.515 -0.249 0.922 2.691 sum -20.135 -0.810 -3.143 20.395 Atomic orbital electron populations 1.21723 0.91198 1.02666 1.03130 1.19680 0.97808 0.95246 0.90202 1.21697 0.99486 0.94949 1.03028 1.23643 0.96608 0.88445 0.96083 1.70118 1.26036 1.27799 0.99968 1.22629 1.01986 0.94715 1.00485 1.23095 1.07414 1.05614 0.82724 1.45046 1.38082 1.23151 1.06545 1.21896 0.94252 0.97911 0.89002 1.20992 0.86469 0.83926 0.79353 1.90765 1.69038 1.29698 1.57239 1.49322 1.25678 1.31632 1.28152 1.23122 1.02766 0.87093 0.89095 1.22643 0.98440 0.94780 0.94589 0.86716 1.22090 0.96499 0.96541 0.99209 1.22506 0.97709 0.97543 0.98822 1.21019 0.88595 0.95305 0.89467 0.93137 1.42584 1.22548 1.23108 1.47303 1.19582 0.98560 1.01127 1.17104 0.91125 1.25300 1.01753 0.98278 1.00638 1.69754 1.38414 1.20774 1.32251 0.85354 0.80735 0.78511 0.76928 1.19387 1.23165 1.21925 1.23088 0.97561 0.99418 0.93704 0.90202 1.22819 0.86769 0.98935 0.92936 0.92793 0.91996 0.89566 0.89289 0.92592 0.95591 0.89458 0.79851 0.78879 0.82977 0.82576 0.90919 0.86236 0.88761 0.92232 0.89784 0.92941 0.79032 0.94275 0.95599 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.18 71.98 0.66 -1.40 16 2 C -0.01 -0.19 3.25 -11.54 -0.04 -0.23 16 3 C -0.13 -3.17 9.17 71.98 0.66 -2.51 16 4 C 0.21 5.90 6.40 138.13 0.88 6.78 16 5 N -0.52 -16.13 11.25 -188.13 -2.12 -18.24 16 6 C -0.05 -1.43 11.87 83.52 0.99 -0.44 16 7 C -0.06 -1.43 11.58 83.09 0.96 -0.47 16 8 N -0.45 -11.27 2.24 -518.35 -1.16 -12.44 16 9 C 0.10 1.81 5.15 85.63 0.44 2.25 16 10 C 0.50 15.39 7.99 87.66 0.70 16.09 16 11 O -0.59 -25.06 16.70 -3.02 -0.05 -25.11 16 12 N -0.62 -17.83 3.31 -805.72 -2.67 -20.50 16 13 C 0.10 1.93 6.46 86.67 0.56 2.49 16 14 C -0.09 -1.64 3.95 -9.32 -0.04 -1.68 16 15 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 16 C -0.11 -2.03 6.37 31.11 0.20 -1.83 16 17 C -0.13 -3.26 6.50 31.24 0.20 -3.06 16 18 C 0.17 5.60 3.54 45.51 0.16 5.76 16 19 H 0.05 1.80 7.90 -2.39 -0.02 1.79 16 20 N -0.72 -32.04 2.88 -320.52 -0.92 -32.97 16 21 C -0.23 -12.13 9.45 84.03 0.79 -11.34 16 22 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 23 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 24 N -0.96 -56.53 13.06 21.65 0.28 -56.25 16 25 Si 0.95 46.30 29.55 68.60 2.03 48.33 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 29 C -0.12 -3.36 3.93 -9.48 -0.04 -3.40 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 C 0.11 4.06 6.27 86.52 0.54 4.61 16 32 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.61 6.85 -2.38 -0.02 1.59 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.16 1.72 7.14 -2.39 -0.02 1.70 16 43 H 0.07 1.58 7.22 -2.39 -0.02 1.56 16 44 H 0.12 1.13 7.32 -2.39 -0.02 1.11 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.27 7.14 -2.38 -0.02 1.26 16 47 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.05 1.57 8.09 -2.39 -0.02 1.55 16 49 H 0.38 18.09 7.63 -92.71 -0.71 17.38 16 50 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 51 H 0.03 1.13 7.88 -2.38 -0.02 1.12 16 52 H 0.09 4.28 5.19 -2.39 -0.01 4.26 16 Total: -1.00 -78.64 410.94 3.71 -74.93 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.21 Total: 33.86 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 8.11 Total: 8.38 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -6.58 Total: -140.39 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -78.64 3.71 -74.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026367255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.396 kcal (2) G-P(sol) polarization free energy of solvation -78.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds