Wall clock time and date at job start Wed Apr 1 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46797 * 2 1 4 4 C 1.52999 * 109.47339 * 239.99902 * 2 1 3 5 5 C 1.50703 * 109.47027 * 119.99352 * 2 1 3 6 6 N 1.30448 * 125.99193 * 238.10619 * 5 2 1 7 7 N 1.39937 * 108.89750 * 180.26936 * 6 5 2 8 8 H 0.97002 * 125.75275 * 179.73935 * 7 6 5 9 9 C 1.34261 * 108.49105 * 359.73726 * 7 6 5 10 10 C 1.38041 * 107.41539 * 0.02562 * 9 7 6 11 11 C 1.47434 * 126.41254 * 179.97438 * 10 9 7 12 12 O 1.21604 * 119.99883 * 186.69734 * 11 10 9 13 13 N 1.34773 * 120.00048 * 6.69751 * 11 10 9 14 14 C 1.49220 * 126.05837 * 356.55321 * 13 11 10 15 15 C 1.50319 * 104.33042 * 172.12969 * 14 13 11 16 16 H 1.08995 * 110.85975 * 279.88141 * 15 14 13 17 17 C 1.51005 * 124.69661 * 145.19761 * 15 14 13 18 18 C 1.56405 * 101.59381 * 204.34707 * 17 15 14 19 19 C 1.55948 * 105.78806 * 25.01554 * 18 17 15 20 20 H 1.08994 * 110.60615 * 126.27193 * 19 18 17 21 21 N 1.46507 * 110.49182 * 248.87499 * 19 18 17 22 22 C 1.36933 * 120.00275 * 269.73406 * 21 19 18 23 23 H 1.08001 * 120.00044 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00308 * 180.27567 * 22 21 19 25 25 N 1.31615 * 119.99602 * 359.72915 * 24 22 21 26 26 Si 1.86797 * 120.00140 * 179.72327 * 24 22 21 27 27 H 1.48507 * 109.46954 * 90.00306 * 26 24 22 28 28 H 1.48503 * 109.47288 * 210.00048 * 26 24 22 29 29 H 1.48503 * 109.47337 * 330.00576 * 26 24 22 30 30 C 1.50285 * 104.15522 * 7.54155 * 19 18 17 31 31 H 1.09002 * 109.99082 * 80.48345 * 30 19 18 32 32 C 1.49694 * 126.06221 * 176.52040 * 13 11 10 33 33 H 1.09001 * 109.46954 * 294.95852 * 1 2 3 34 34 H 1.08992 * 109.47405 * 54.95740 * 1 2 3 35 35 H 1.09003 * 109.46675 * 174.96047 * 1 2 3 36 36 H 1.09006 * 109.46591 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47178 * 299.99658 * 3 2 1 38 38 H 1.09000 * 109.47583 * 59.99990 * 3 2 1 39 39 H 1.09000 * 109.46611 * 305.46684 * 4 2 1 40 40 H 1.09000 * 109.46925 * 65.47022 * 4 2 1 41 41 H 1.09002 * 109.47014 * 185.46944 * 4 2 1 42 42 H 1.07999 * 126.28680 * 179.97438 * 9 7 6 43 43 H 1.08997 * 110.36245 * 291.75578 * 14 13 11 44 44 H 1.09001 * 110.35854 * 53.95293 * 14 13 11 45 45 H 1.09004 * 111.00253 * 322.41571 * 17 15 14 46 46 H 1.08992 * 111.00568 * 86.23120 * 17 15 14 47 47 H 1.09005 * 110.18469 * 265.94331 * 18 17 15 48 48 H 1.08996 * 110.19172 * 144.09657 * 18 17 15 49 49 H 0.96999 * 119.99602 * 89.73909 * 21 19 18 50 50 H 0.97001 * 120.00077 * 179.97438 * 25 24 22 51 51 H 1.09004 * 110.84438 * 36.70174 * 32 13 11 52 52 H 1.09002 * 111.01683 * 273.16867 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 2.8136 -0.2026 2.1435 7 7 3.0595 -1.1736 3.1207 8 1 3.6129 -1.0572 3.9088 9 6 2.4002 -2.2935 2.7835 10 6 1.7374 -2.0420 1.5990 11 6 0.8857 -2.9878 0.8548 12 8 0.4542 -2.6848 -0.2410 13 7 0.5854 -4.1882 1.3890 14 6 1.0970 -4.7263 2.6834 15 6 0.3115 -5.9899 2.8974 16 1 -0.6785 -5.7687 3.2961 17 6 0.8548 -7.2402 3.5468 18 6 -0.0799 -8.3395 2.9433 19 6 -0.5969 -7.7609 1.5906 20 1 -0.3988 -8.4565 0.7751 21 7 -2.0292 -7.4644 1.6736 22 6 -2.9475 -8.4214 1.3330 23 1 -2.6159 -9.3950 1.0035 24 6 -4.3045 -8.1385 1.4061 25 7 -4.7086 -6.9522 1.8081 26 14 -5.5570 -9.4415 0.9341 27 1 -5.9127 -10.2433 2.1324 28 1 -6.7763 -8.7849 0.3980 29 1 -4.9776 -10.3323 -0.1033 30 6 0.1926 -6.4955 1.4063 31 1 1.1823 -6.7277 1.0130 32 6 -0.3209 -5.2177 0.7894 33 1 -0.3633 0.4336 0.9317 34 1 -0.3634 0.5900 -0.8413 35 1 -0.3633 -1.0237 -0.0903 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 1.5989 -1.7168 -1.2994 40 1 1.7589 -0.1540 -2.1365 41 1 3.1256 -0.8068 -1.2015 42 1 2.3909 -3.2209 3.3369 43 1 2.1651 -4.9317 2.6131 44 1 0.8993 -4.0220 3.4915 45 1 1.8928 -7.4098 3.2603 46 1 0.7537 -7.1929 4.6310 47 1 -0.9169 -8.5315 3.6146 48 1 0.4820 -9.2572 2.7696 49 1 -2.3270 -6.5901 1.9698 50 1 -5.6569 -6.7543 1.8589 51 1 -0.2167 -5.2415 -0.2954 52 1 -1.3578 -5.0389 1.0739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026396183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:37 Heat of formation + Delta-G solvation = 74.810282 kcal Electronic energy + Delta-G solvation = -31887.946380 eV Core-core repulsion = 27890.062279 eV Total energy + Delta-G solvation = -3997.884101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.75290 -40.33537 -38.36579 -36.72954 -35.14095 -33.32642 -31.23209 -31.14929 -30.77549 -28.85503 -28.56495 -27.06757 -27.03315 -25.53461 -24.03559 -23.26300 -22.77977 -21.76986 -20.33727 -19.71852 -18.85505 -18.26371 -17.77431 -17.35614 -16.34466 -15.91309 -15.40477 -15.12151 -14.93650 -14.81958 -14.51507 -14.41645 -14.20889 -13.92044 -13.50851 -13.37794 -13.08910 -12.78353 -12.72730 -12.33731 -12.10274 -12.03948 -11.89820 -11.57671 -11.50117 -11.15445 -11.11779 -11.09933 -10.94097 -10.91265 -10.83354 -10.67244 -10.55639 -10.39357 -10.29832 -10.09265 -9.71442 -9.65317 -9.61761 -9.35840 -8.93610 -8.92511 -8.41340 -6.99149 -5.78872 -3.07894 1.37277 2.08623 2.48824 3.05474 3.42585 3.48426 3.49334 3.50007 4.15896 4.25500 4.43001 4.57911 4.80203 4.86536 4.91338 5.09256 5.12138 5.22015 5.27814 5.31548 5.38569 5.40340 5.44990 5.55511 5.63672 5.69661 5.77941 5.79049 5.80240 5.90176 5.92864 5.98320 6.02667 6.03921 6.09171 6.17082 6.19440 6.25441 6.29115 6.35535 6.40313 6.44920 6.51066 6.64003 6.66076 6.70879 6.80881 6.90573 7.02315 7.39211 7.69388 7.72077 8.39495 8.44812 9.51018 10.07008 10.41426 11.43461 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.002837 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.948835 B = 9868.368660 C =11062.953909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.019 3.981 3 C -0.136 4.136 4 C -0.154 4.154 5 C 0.149 3.851 6 N -0.299 5.299 7 N -0.467 5.467 8 H 0.442 0.558 9 C 0.089 3.911 10 C -0.276 4.276 11 C 0.603 3.397 12 O -0.529 6.529 13 N -0.620 5.620 14 C 0.114 3.886 15 C -0.131 4.131 16 H 0.092 0.908 17 C -0.097 4.097 18 C -0.145 4.145 19 C 0.194 3.806 20 H 0.057 0.943 21 N -0.718 5.718 22 C -0.241 4.241 23 H 0.071 0.929 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 C -0.119 4.119 31 H 0.075 0.925 32 C 0.134 3.866 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.052 0.948 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.079 0.921 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.406 10.269 3.638 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 C -0.194 4.194 4 C -0.212 4.212 5 C -0.020 4.020 6 N -0.120 5.120 7 N -0.171 5.171 8 H 0.286 0.714 9 C -0.063 4.063 10 C -0.290 4.290 11 C 0.394 3.606 12 O -0.408 6.408 13 N -0.354 5.354 14 C -0.008 4.008 15 C -0.149 4.149 16 H 0.111 0.889 17 C -0.135 4.135 18 C -0.186 4.186 19 C 0.082 3.918 20 H 0.075 0.925 21 N -0.359 5.359 22 C -0.372 4.372 23 H 0.089 0.911 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.139 4.139 31 H 0.093 0.907 32 C 0.013 3.987 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.210 0.790 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.097 0.903 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.724 11.416 3.322 22.180 hybrid contribution -0.857 -1.098 0.482 1.474 sum 17.867 10.318 3.804 20.980 Atomic orbital electron populations 1.22166 0.92644 1.05601 1.00797 1.18987 0.96322 0.93752 0.89281 1.21831 1.01085 0.94825 1.01645 1.22195 1.00042 1.04074 0.94890 1.22427 0.92972 0.91536 0.95018 1.77140 1.21696 1.12837 1.00312 1.46149 1.39797 1.09181 1.21966 0.71387 1.23890 0.93345 0.92797 0.96266 1.20257 1.11868 0.96993 0.99924 1.16836 0.79575 0.79449 0.84736 1.90538 1.54838 1.75203 1.20251 1.49672 1.47602 1.16269 1.21857 1.21544 0.97732 0.95614 0.85919 1.22273 1.01052 0.93449 0.98175 0.88934 1.21729 0.98706 0.93928 0.99139 1.23869 0.98456 0.96652 0.99652 1.20138 0.85188 0.92040 0.94407 0.92520 1.42431 0.98624 1.15195 1.79657 1.19235 0.86887 0.94007 1.37060 0.91143 1.24726 0.97006 0.96803 1.02199 1.69645 1.14572 1.20388 1.53337 0.86223 0.81397 0.80756 0.77985 1.21831 1.21820 1.20772 1.22488 1.00684 0.95490 0.95275 0.90652 1.21443 0.93863 0.85044 0.98353 0.93734 0.92381 0.88385 0.92602 0.92349 0.92622 0.87969 0.92526 0.93928 0.78965 0.91297 0.91197 0.92107 0.92123 0.90586 0.92872 0.78118 0.93481 0.90290 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.21 37.16 0.31 -1.76 16 2 C 0.02 0.24 0.75 -155.66 -0.12 0.12 16 3 C -0.14 -1.49 7.96 37.16 0.30 -1.19 16 4 C -0.15 -1.97 8.27 37.16 0.31 -1.66 16 5 C 0.15 1.98 5.64 -82.02 -0.46 1.52 16 6 N -0.30 -3.66 11.93 33.90 0.40 -3.26 16 7 N -0.47 -4.12 7.29 30.85 0.22 -3.89 16 8 H 0.44 2.18 8.96 -182.72 -1.64 0.54 16 9 C 0.09 0.83 10.54 -16.56 -0.17 0.66 16 10 C -0.28 -3.57 5.93 -105.07 -0.62 -4.20 16 11 C 0.60 9.08 7.59 -12.52 -0.10 8.99 16 12 O -0.53 -9.13 10.33 5.27 0.05 -9.08 16 13 N -0.62 -8.68 3.43 -172.84 -0.59 -9.28 16 14 C 0.11 1.22 4.83 -3.87 -0.02 1.20 16 15 C -0.13 -1.67 2.71 -90.28 -0.24 -1.92 16 16 H 0.09 1.44 7.63 -51.93 -0.40 1.05 16 17 C -0.10 -1.15 6.70 -25.90 -0.17 -1.32 16 18 C -0.15 -2.23 6.73 -23.32 -0.16 -2.39 16 19 C 0.19 3.45 3.46 -67.70 -0.23 3.22 16 20 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 21 N -0.72 -16.51 4.81 -53.21 -0.26 -16.76 16 22 C -0.24 -6.33 9.96 -15.06 -0.15 -6.48 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 26 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 C -0.12 -1.77 2.63 -90.34 -0.24 -2.01 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 C 0.13 2.17 6.50 -3.31 -0.02 2.15 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.55 4.63 -51.93 -0.24 1.31 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.53 4.65 -51.93 -0.24 1.29 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.19 1.20 4.52 -52.49 -0.24 0.97 16 43 H 0.07 0.58 7.45 -51.93 -0.39 0.20 16 44 H 0.07 0.64 6.53 -51.93 -0.34 0.30 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.38 9.43 6.15 -40.82 -0.25 9.18 16 50 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 52 H 0.09 1.63 6.93 -51.93 -0.36 1.27 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -31.58 392.92 -9.98 -41.56 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -9.54 Total: 9.91 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.90 Total: -5.47 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.51 Total: -59.71 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.05 Total: -9.08 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.58 -9.98 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026396183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.369 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds