Wall clock time and date at job start Wed Apr 1 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46797 * 2 1 4 4 C 1.52999 * 109.47339 * 239.99902 * 2 1 3 5 5 C 1.50703 * 109.47027 * 119.99352 * 2 1 3 6 6 N 1.30448 * 125.99193 * 238.10619 * 5 2 1 7 7 N 1.39937 * 108.89750 * 180.26936 * 6 5 2 8 8 H 0.97002 * 125.75275 * 179.73935 * 7 6 5 9 9 C 1.34261 * 108.49105 * 359.73726 * 7 6 5 10 10 C 1.38041 * 107.41539 * 0.02562 * 9 7 6 11 11 C 1.47434 * 126.41254 * 179.97438 * 10 9 7 12 12 O 1.21604 * 119.99883 * 186.69734 * 11 10 9 13 13 N 1.34773 * 120.00048 * 6.69751 * 11 10 9 14 14 C 1.49220 * 126.05837 * 356.55321 * 13 11 10 15 15 C 1.50319 * 104.33042 * 172.12969 * 14 13 11 16 16 H 1.08995 * 110.85975 * 279.88141 * 15 14 13 17 17 C 1.51005 * 124.69661 * 145.19761 * 15 14 13 18 18 C 1.56405 * 101.59381 * 204.34707 * 17 15 14 19 19 C 1.55948 * 105.78806 * 25.01554 * 18 17 15 20 20 H 1.08994 * 110.60615 * 126.27193 * 19 18 17 21 21 N 1.46507 * 110.49182 * 248.87499 * 19 18 17 22 22 C 1.36933 * 120.00275 * 269.73406 * 21 19 18 23 23 H 1.08001 * 120.00044 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00308 * 180.27567 * 22 21 19 25 25 N 1.31615 * 119.99602 * 359.72915 * 24 22 21 26 26 Si 1.86797 * 120.00140 * 179.72327 * 24 22 21 27 27 H 1.48507 * 109.46954 * 90.00306 * 26 24 22 28 28 H 1.48503 * 109.47288 * 210.00048 * 26 24 22 29 29 H 1.48503 * 109.47337 * 330.00576 * 26 24 22 30 30 C 1.50285 * 104.15522 * 7.54155 * 19 18 17 31 31 H 1.09002 * 109.99082 * 80.48345 * 30 19 18 32 32 C 1.49694 * 126.06221 * 176.52040 * 13 11 10 33 33 H 1.09001 * 109.46954 * 294.95852 * 1 2 3 34 34 H 1.08992 * 109.47405 * 54.95740 * 1 2 3 35 35 H 1.09003 * 109.46675 * 174.96047 * 1 2 3 36 36 H 1.09006 * 109.46591 * 179.97438 * 3 2 1 37 37 H 1.08994 * 109.47178 * 299.99658 * 3 2 1 38 38 H 1.09000 * 109.47583 * 59.99990 * 3 2 1 39 39 H 1.09000 * 109.46611 * 305.46684 * 4 2 1 40 40 H 1.09000 * 109.46925 * 65.47022 * 4 2 1 41 41 H 1.09002 * 109.47014 * 185.46944 * 4 2 1 42 42 H 1.07999 * 126.28680 * 179.97438 * 9 7 6 43 43 H 1.08997 * 110.36245 * 291.75578 * 14 13 11 44 44 H 1.09001 * 110.35854 * 53.95293 * 14 13 11 45 45 H 1.09004 * 111.00253 * 322.41571 * 17 15 14 46 46 H 1.08992 * 111.00568 * 86.23120 * 17 15 14 47 47 H 1.09005 * 110.18469 * 265.94331 * 18 17 15 48 48 H 1.08996 * 110.19172 * 144.09657 * 18 17 15 49 49 H 0.96999 * 119.99602 * 89.73909 * 21 19 18 50 50 H 0.97001 * 120.00077 * 179.97438 * 25 24 22 51 51 H 1.09004 * 110.84438 * 36.70174 * 32 13 11 52 52 H 1.09002 * 111.01683 * 273.16867 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 2.8136 -0.2026 2.1435 7 7 3.0595 -1.1736 3.1207 8 1 3.6129 -1.0572 3.9088 9 6 2.4002 -2.2935 2.7835 10 6 1.7374 -2.0420 1.5990 11 6 0.8857 -2.9878 0.8548 12 8 0.4542 -2.6848 -0.2410 13 7 0.5854 -4.1882 1.3890 14 6 1.0970 -4.7263 2.6834 15 6 0.3115 -5.9899 2.8974 16 1 -0.6785 -5.7687 3.2961 17 6 0.8548 -7.2402 3.5468 18 6 -0.0799 -8.3395 2.9433 19 6 -0.5969 -7.7609 1.5906 20 1 -0.3988 -8.4565 0.7751 21 7 -2.0292 -7.4644 1.6736 22 6 -2.9475 -8.4214 1.3330 23 1 -2.6159 -9.3950 1.0035 24 6 -4.3045 -8.1385 1.4061 25 7 -4.7086 -6.9522 1.8081 26 14 -5.5570 -9.4415 0.9341 27 1 -5.9127 -10.2433 2.1324 28 1 -6.7763 -8.7849 0.3980 29 1 -4.9776 -10.3323 -0.1033 30 6 0.1926 -6.4955 1.4063 31 1 1.1823 -6.7277 1.0130 32 6 -0.3209 -5.2177 0.7894 33 1 -0.3633 0.4336 0.9317 34 1 -0.3634 0.5900 -0.8413 35 1 -0.3633 -1.0237 -0.0903 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 1.5989 -1.7168 -1.2994 40 1 1.7589 -0.1540 -2.1365 41 1 3.1256 -0.8068 -1.2015 42 1 2.3909 -3.2209 3.3369 43 1 2.1651 -4.9317 2.6131 44 1 0.8993 -4.0220 3.4915 45 1 1.8928 -7.4098 3.2603 46 1 0.7537 -7.1929 4.6310 47 1 -0.9169 -8.5315 3.6146 48 1 0.4820 -9.2572 2.7696 49 1 -2.3270 -6.5901 1.9698 50 1 -5.6569 -6.7543 1.8589 51 1 -0.2167 -5.2415 -0.2954 52 1 -1.3578 -5.0389 1.0739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026396183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:35 Heat of formation + Delta-G solvation = 54.543223 kcal Electronic energy + Delta-G solvation = -31888.825226 eV Core-core repulsion = 27890.062279 eV Total energy + Delta-G solvation = -3998.762946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.64444 -41.47199 -39.50209 -37.71940 -36.50924 -34.98605 -32.56977 -32.18607 -31.97341 -30.02653 -29.83548 -28.07545 -27.98528 -26.94846 -25.20602 -25.00152 -23.68316 -22.78555 -21.31415 -20.78284 -20.22164 -19.36724 -19.17692 -18.60129 -17.41508 -17.11620 -16.69744 -16.30161 -16.04654 -15.95941 -15.73458 -15.64634 -15.29783 -15.25045 -14.77375 -14.69888 -14.35111 -13.88398 -13.81787 -13.54408 -13.20908 -13.15601 -13.00719 -12.94376 -12.82470 -12.62048 -12.49112 -12.23320 -12.18040 -12.14548 -12.04396 -11.95722 -11.89047 -11.74382 -11.47847 -11.40825 -11.34204 -10.93618 -10.83709 -10.52491 -10.49932 -9.84882 -9.51567 -8.93313 -7.90277 -5.16793 0.56016 1.11095 1.48366 1.49424 1.57467 1.72304 2.03435 2.45495 2.59105 3.04571 3.36273 3.44331 3.64896 3.82243 3.86316 4.00771 4.05891 4.12857 4.12992 4.29193 4.30681 4.37015 4.43726 4.49135 4.52117 4.53626 4.67019 4.70971 4.78904 4.80694 4.83227 4.90212 4.94660 5.00917 5.03324 5.08802 5.09807 5.14575 5.16382 5.23013 5.28070 5.30009 5.45039 5.46674 5.50196 5.57163 5.59145 5.67262 5.73812 6.28873 6.32612 6.52487 6.67328 7.35137 7.38909 8.17547 8.38635 9.33071 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.002837 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.948835 B = 9868.368660 C =11062.953909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.015 3.985 3 C -0.128 4.128 4 C -0.148 4.148 5 C 0.134 3.866 6 N -0.315 5.315 7 N -0.447 5.447 8 H 0.461 0.539 9 C 0.120 3.880 10 C -0.309 4.309 11 C 0.596 3.404 12 O -0.562 6.562 13 N -0.620 5.620 14 C 0.113 3.887 15 C -0.113 4.113 16 H 0.057 0.943 17 C -0.081 4.081 18 C -0.140 4.140 19 C 0.181 3.819 20 H 0.048 0.952 21 N -0.730 5.730 22 C -0.232 4.232 23 H 0.076 0.924 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.271 1.271 30 C -0.119 4.119 31 H 0.102 0.898 32 C 0.139 3.861 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.232 0.768 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.373 0.627 50 H 0.248 0.752 51 H 0.059 0.941 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.891 9.952 5.436 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.012 3.988 3 C -0.186 4.186 4 C -0.206 4.206 5 C -0.034 4.034 6 N -0.137 5.137 7 N -0.153 5.153 8 H 0.310 0.690 9 C -0.034 4.034 10 C -0.323 4.323 11 C 0.388 3.612 12 O -0.444 6.444 13 N -0.354 5.354 14 C -0.007 4.007 15 C -0.132 4.132 16 H 0.075 0.925 17 C -0.119 4.119 18 C -0.180 4.180 19 C 0.072 3.928 20 H 0.066 0.934 21 N -0.370 5.370 22 C -0.364 4.364 23 H 0.093 0.907 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.216 1.216 28 H -0.228 1.228 29 H -0.196 1.196 30 C -0.139 4.139 31 H 0.120 0.880 32 C 0.017 3.983 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.248 0.752 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.096 0.904 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.206 0.794 50 H 0.056 0.944 51 H 0.078 0.922 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.296 11.080 5.157 25.426 hybrid contribution -1.879 -1.022 -0.080 2.140 sum 20.417 10.058 5.077 23.319 Atomic orbital electron populations 1.22074 0.93698 1.03963 1.00987 1.18995 0.95501 0.94829 0.89425 1.21754 1.01060 0.93642 1.02105 1.22090 0.99951 1.02959 0.95575 1.22491 0.93539 0.91965 0.95425 1.77085 1.21829 1.13938 1.00863 1.46180 1.39038 1.08351 1.21749 0.69026 1.24283 0.90896 0.93658 0.94560 1.20164 1.13655 0.96728 1.01790 1.17246 0.79586 0.79712 0.84622 1.90536 1.56150 1.75831 1.21898 1.49656 1.47114 1.15680 1.22936 1.21825 0.99438 0.94625 0.84806 1.22175 1.00096 0.94942 0.96031 0.92496 1.21680 0.99405 0.90970 0.99806 1.23664 0.98435 0.98837 0.97110 1.20458 0.82820 0.93781 0.95779 0.93423 1.42601 1.00666 1.14127 1.79596 1.19623 0.87600 0.94513 1.34647 0.90651 1.25457 0.98964 0.98664 1.03776 1.69806 1.14119 1.22324 1.55846 0.85245 0.78810 0.78566 0.77795 1.21563 1.22834 1.19551 1.22326 1.00782 0.93513 0.97282 0.87972 1.21101 0.92621 0.87092 0.97489 0.94019 0.91463 0.91018 0.92437 0.91156 0.92874 0.90307 0.91625 0.93599 0.75240 0.87100 0.88837 0.88484 0.90437 0.93780 0.90988 0.79434 0.94352 0.92246 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.21 71.98 0.59 -3.53 16 2 C 0.01 0.37 0.75 -52.93 -0.04 0.33 16 3 C -0.13 -2.67 7.96 71.98 0.57 -2.10 16 4 C -0.15 -3.81 8.27 71.98 0.59 -3.21 16 5 C 0.13 3.40 5.64 43.52 0.25 3.65 16 6 N -0.32 -7.02 11.93 -46.67 -0.56 -7.58 16 7 N -0.45 -6.17 7.29 -56.32 -0.41 -6.58 16 8 H 0.46 2.48 8.96 -213.42 -1.91 0.57 16 9 C 0.12 1.75 10.54 84.27 0.89 2.64 16 10 C -0.31 -7.48 5.93 -20.15 -0.12 -7.60 16 11 C 0.60 17.92 7.59 86.67 0.66 18.58 16 12 O -0.56 -20.45 10.33 -4.04 -0.04 -20.50 16 13 N -0.62 -16.88 3.43 -819.00 -2.81 -19.69 16 14 C 0.11 1.99 4.83 84.99 0.41 2.40 16 15 C -0.11 -2.63 2.71 -10.57 -0.03 -2.66 16 16 H 0.06 1.76 7.63 -2.39 -0.02 1.74 16 17 C -0.08 -1.57 6.70 31.13 0.21 -1.36 16 18 C -0.14 -4.04 6.73 32.80 0.22 -3.82 16 19 C 0.18 6.42 3.46 45.13 0.16 6.58 16 20 H 0.05 1.75 8.09 -2.39 -0.02 1.73 16 21 N -0.73 -34.80 4.81 -322.25 -1.55 -36.35 16 22 C -0.23 -12.49 9.96 84.03 0.84 -11.66 16 23 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 25 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 26 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 29 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 30 C -0.12 -3.43 2.63 -10.61 -0.03 -3.46 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 C 0.14 4.71 6.50 85.08 0.55 5.26 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 35 H 0.07 2.41 4.63 -2.39 -0.01 2.40 16 36 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 2.47 4.65 -2.39 -0.01 2.45 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.23 1.43 4.52 -2.91 -0.01 1.41 16 43 H 0.11 1.13 7.45 -2.39 -0.02 1.11 16 44 H 0.09 1.26 6.53 -2.39 -0.02 1.24 16 45 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.04 1.56 7.98 -2.38 -0.02 1.54 16 48 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.37 19.39 6.15 -92.71 -0.57 18.82 16 50 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 51 H 0.06 2.18 8.07 -2.38 -0.02 2.16 16 52 H 0.04 1.87 6.93 -2.39 -0.02 1.85 16 Total: -1.00 -74.73 392.92 1.60 -73.13 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -1.53 Total: 32.21 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 6.19 Total: -3.85 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -5.04 Total: -129.20 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.04 Total: -20.50 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.73 1.60 -73.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026396183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.670 kcal (2) G-P(sol) polarization free energy of solvation -74.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds