Wall clock time and date at job start Wed Apr 1 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 C 1.50706 * 109.47162 * 119.99753 * 2 1 3 5 5 N 1.30448 * 125.98605 * 300.14428 * 4 2 1 6 6 N 1.39936 * 108.89004 * 180.26459 * 5 4 2 7 7 C 1.46498 * 125.75033 * 179.77524 * 6 5 4 8 8 C 1.34256 * 108.49743 * 359.75040 * 6 5 4 9 9 C 1.38048 * 107.41644 * 359.97438 * 8 6 5 10 10 C 1.47420 * 126.41703 * 179.97438 * 9 8 6 11 11 O 1.21607 * 120.00494 * 213.72712 * 10 9 8 12 12 N 1.34783 * 119.99944 * 33.72871 * 10 9 8 13 13 C 1.47206 * 126.70059 * 5.65107 * 12 10 9 14 14 C 1.53776 * 106.38302 * 148.69493 * 13 12 10 15 15 H 1.08997 * 112.38729 * 256.84966 * 14 13 12 16 16 C 1.54329 * 109.06583 * 132.42592 * 14 13 12 17 17 C 1.55055 * 103.93487 * 222.03768 * 16 14 13 18 18 C 1.55055 * 102.11242 * 40.05534 * 17 16 14 19 19 H 1.08994 * 110.53671 * 201.32669 * 18 17 16 20 20 N 1.46503 * 110.65092 * 78.61388 * 18 17 16 21 21 C 1.36931 * 119.99953 * 120.61808 * 20 18 17 22 22 H 1.08002 * 120.00283 * 359.97438 * 21 20 18 23 23 C 1.38817 * 120.00162 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00116 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47089 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47300 * 120.00057 * 25 23 21 28 28 H 1.48503 * 109.47233 * 240.00455 * 25 23 21 29 29 C 1.54321 * 103.93634 * 319.94502 * 18 17 16 30 30 H 1.09004 * 111.68484 * 262.79235 * 29 18 17 31 31 C 1.47212 * 126.70069 * 185.61912 * 12 10 9 32 32 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46719 * 299.99956 * 1 2 3 34 34 H 1.09001 * 109.47225 * 60.00172 * 1 2 3 35 35 H 1.08995 * 109.46999 * 239.99509 * 2 1 3 36 36 H 1.08998 * 109.47173 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46864 * 300.00049 * 3 2 1 38 38 H 1.08996 * 109.47085 * 59.99514 * 3 2 1 39 39 H 1.09000 * 109.47331 * 269.97182 * 7 6 5 40 40 H 1.09002 * 109.47529 * 29.97343 * 7 6 5 41 41 H 1.09005 * 109.47528 * 149.96897 * 7 6 5 42 42 H 1.08003 * 126.29596 * 180.02562 * 8 6 5 43 43 H 1.09003 * 110.08092 * 29.46274 * 13 12 10 44 44 H 1.09003 * 110.07420 * 267.92638 * 13 12 10 45 45 H 1.09002 * 110.53061 * 340.64870 * 16 14 13 46 46 H 1.08990 * 110.53303 * 103.42371 * 16 14 13 47 47 H 1.09001 * 110.90338 * 158.25954 * 17 16 14 48 48 H 1.08999 * 110.90084 * 281.85373 * 17 16 14 49 49 H 0.96997 * 120.00388 * 300.60980 * 20 18 17 50 50 H 0.96999 * 119.99861 * 180.02562 * 24 23 21 51 51 H 1.08998 * 110.07197 * 92.07614 * 31 12 10 52 52 H 1.09000 * 110.07764 * 330.53060 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7881 -0.3695 2.4658 6 7 2.4337 -1.2701 3.3204 7 6 2.4094 -1.2280 4.7846 8 6 3.0786 -2.1794 2.5724 9 6 2.8476 -1.8643 1.2484 10 6 3.3611 -2.5912 0.0732 11 8 3.6415 -1.9843 -0.9426 12 7 3.5197 -3.9287 0.1245 13 6 3.1219 -4.8202 1.2263 14 6 2.7555 -6.1680 0.5831 15 1 1.6779 -6.3195 0.5218 16 6 3.4478 -7.3044 1.3648 17 6 3.9620 -8.2601 0.2573 18 6 4.4716 -7.2668 -0.8187 19 1 4.5166 -7.7502 -1.7946 20 7 5.7855 -6.7343 -0.4494 21 6 6.8587 -6.9238 -1.2785 22 1 6.7367 -7.4662 -2.2044 23 6 8.1036 -6.4188 -0.9288 24 7 8.2525 -5.7582 0.1998 25 14 9.5678 -6.6780 -2.0595 26 1 9.1395 -7.4465 -3.2559 27 1 10.1046 -5.3602 -2.4843 28 1 10.6232 -7.4330 -1.3374 29 6 3.4130 -6.1439 -0.8190 30 1 2.6787 -6.2828 -1.6125 31 6 4.1239 -4.7834 -0.9107 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 3.2403 -0.6213 5.1445 40 1 1.4687 -0.7914 5.1200 41 1 2.5010 -2.2401 5.1788 42 1 3.6690 -3.0062 2.9390 43 1 2.2584 -4.4078 1.7483 44 1 3.9521 -4.9503 1.9206 45 1 4.2805 -6.9139 1.9498 46 1 2.7329 -7.8157 2.0093 47 1 4.7760 -8.8830 0.6283 48 1 3.1509 -8.8745 -0.1335 49 1 5.8952 -6.2474 0.3823 50 1 9.1223 -5.4051 0.4439 51 1 5.1902 -4.9049 -0.7200 52 1 3.9672 -4.3450 -1.8963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026419394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:20 Heat of formation + Delta-G solvation = 54.159775 kcal Electronic energy + Delta-G solvation = -31962.347749 eV Core-core repulsion = 27963.568175 eV Total energy + Delta-G solvation = -3998.779574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.48662 -39.91727 -37.95550 -35.84958 -34.82949 -33.34295 -32.54463 -30.96741 -30.61160 -28.79921 -28.31943 -27.12442 -27.03243 -25.10642 -23.94823 -23.34181 -22.48855 -21.59303 -19.98515 -19.35219 -18.78739 -18.56679 -17.51299 -16.99507 -16.27842 -15.73781 -15.47865 -15.08451 -14.88621 -14.73934 -14.47353 -14.32831 -13.88701 -13.57588 -13.47931 -13.20821 -13.15156 -13.00172 -12.83284 -12.57837 -12.44203 -12.16069 -12.10925 -11.91494 -11.44774 -11.23551 -11.17828 -11.00697 -10.93318 -10.79138 -10.71497 -10.60256 -10.50424 -10.23186 -10.22584 -10.07452 -9.96316 -9.62856 -9.39696 -9.37136 -8.99389 -8.61177 -8.08446 -6.97589 -5.82931 -3.11680 1.58984 2.25366 2.30020 3.42102 3.43825 3.48683 3.50472 3.60916 4.26699 4.55597 4.57020 4.71415 4.73765 4.87069 4.88096 4.98004 5.05765 5.13076 5.19979 5.24181 5.41141 5.50669 5.53034 5.54011 5.61855 5.64565 5.66336 5.68903 5.82004 5.83691 5.89316 5.91918 6.00338 6.02105 6.08888 6.09895 6.19734 6.26937 6.29202 6.32182 6.47117 6.54218 6.56466 6.67964 6.72499 6.80216 6.85324 6.95781 7.18576 7.58478 7.68499 8.04736 8.35277 8.65766 9.47338 10.01746 10.36291 11.38960 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.003219 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.614403 B = 8695.394854 C = 9264.601911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.023 4.023 3 C -0.137 4.137 4 C 0.135 3.865 5 N -0.299 5.299 6 N -0.367 5.367 7 C 0.099 3.901 8 C 0.097 3.903 9 C -0.273 4.273 10 C 0.606 3.394 11 O -0.545 6.545 12 N -0.607 5.607 13 C 0.108 3.892 14 C -0.099 4.099 15 H 0.078 0.922 16 C -0.113 4.113 17 C -0.142 4.142 18 C 0.177 3.823 19 H 0.067 0.933 20 N -0.707 5.707 21 C -0.247 4.247 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C -0.120 4.120 30 H 0.075 0.925 31 C 0.096 3.904 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.183 0.817 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.386 0.614 50 H 0.255 0.745 51 H 0.126 0.874 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.506 5.588 8.526 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 C -0.195 4.195 4 C -0.033 4.033 5 N -0.120 5.120 6 N -0.145 5.145 7 C -0.042 4.042 8 C -0.053 4.053 9 C -0.288 4.288 10 C 0.395 3.605 11 O -0.423 6.423 12 N -0.340 5.340 13 C -0.016 4.016 14 C -0.119 4.119 15 H 0.097 0.903 16 C -0.150 4.150 17 C -0.182 4.182 18 C 0.065 3.935 19 H 0.085 0.915 20 N -0.346 5.346 21 C -0.377 4.377 22 H 0.091 0.909 23 C -0.205 4.205 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.142 4.142 30 H 0.094 0.906 31 C -0.026 4.026 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.200 0.800 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.221 0.779 50 H 0.065 0.935 51 H 0.143 0.857 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.784 6.803 8.802 20.136 hybrid contribution 1.368 -0.695 -0.431 1.593 sum -15.416 6.108 8.371 18.575 Atomic orbital electron populations 1.21803 0.94066 1.01872 1.02030 1.19787 0.95581 0.95938 0.93044 1.21747 1.01556 0.94442 1.01774 1.22289 0.94774 0.92885 0.93339 1.77066 1.20492 1.14357 1.00045 1.48248 1.37968 1.21416 1.06891 1.21939 1.04446 1.04066 0.73738 1.23166 0.96436 0.94861 0.90873 1.20245 1.12897 1.02872 0.92783 1.16807 0.77386 0.80021 0.86259 1.90737 1.52106 1.66905 1.32558 1.48400 1.60025 1.05219 1.20316 1.22269 0.99111 0.89999 0.90192 1.22546 0.99418 0.93970 0.95934 0.90320 1.22478 0.99133 0.95906 0.97519 1.23163 0.99740 0.97899 0.97415 1.21033 0.85430 0.90843 0.96235 0.91464 1.42481 1.03270 1.64287 1.24609 1.19350 0.87601 1.29726 1.01062 0.90893 1.24725 0.97733 1.00588 0.97429 1.69652 1.23460 1.41481 1.23125 0.86147 0.83000 0.77333 0.79870 1.20492 1.21824 1.21948 1.23125 0.98040 0.97352 0.95716 0.90616 1.22720 1.01631 0.87248 0.91007 0.92807 0.92318 0.92012 0.87752 0.92362 0.92076 0.92487 0.90423 0.89078 0.89131 0.79999 0.91694 0.91368 0.91111 0.92649 0.91240 0.92488 0.77930 0.93494 0.85687 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 2 C -0.02 -0.31 3.24 -91.77 -0.30 -0.61 16 3 C -0.14 -1.66 9.18 37.16 0.34 -1.32 16 4 C 0.13 2.02 5.76 -82.02 -0.47 1.55 16 5 N -0.30 -4.18 12.50 33.90 0.42 -3.76 16 6 N -0.37 -4.28 3.98 -67.60 -0.27 -4.55 16 7 C 0.10 0.66 11.44 59.85 0.68 1.34 16 8 C 0.10 1.23 9.71 -16.56 -0.16 1.07 16 9 C -0.27 -4.32 5.57 -105.07 -0.59 -4.90 16 10 C 0.61 11.32 7.63 -12.52 -0.10 11.22 16 11 O -0.54 -11.93 15.61 5.27 0.08 -11.85 16 12 N -0.61 -10.56 3.32 -172.86 -0.57 -11.13 16 13 C 0.11 1.50 5.05 -3.25 -0.02 1.48 16 14 C -0.10 -1.35 3.91 -88.53 -0.35 -1.69 16 15 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.11 -1.52 6.17 -24.95 -0.15 -1.67 16 17 C -0.14 -2.17 6.61 -24.56 -0.16 -2.34 16 18 C 0.18 3.19 3.53 -66.15 -0.23 2.96 16 19 H 0.07 1.24 7.84 -51.93 -0.41 0.84 16 20 N -0.71 -16.05 2.98 -51.71 -0.15 -16.20 16 21 C -0.25 -6.42 9.89 -15.06 -0.15 -6.56 16 22 H 0.07 1.86 7.68 -52.49 -0.40 1.46 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 24 N -0.93 -26.84 13.06 55.49 0.72 -26.11 16 25 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 C -0.12 -1.95 3.89 -88.53 -0.34 -2.29 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 C 0.10 1.84 6.39 -3.25 -0.02 1.82 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.63 6.33 -51.93 -0.33 1.30 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.18 1.89 6.92 -52.48 -0.36 1.53 16 43 H 0.06 0.78 6.86 -51.93 -0.36 0.43 16 44 H 0.07 0.94 6.79 -51.93 -0.35 0.59 16 45 H 0.07 1.05 7.00 -51.93 -0.36 0.69 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.39 9.33 7.03 -40.82 -0.29 9.05 16 50 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 51 H 0.13 2.90 5.22 -51.93 -0.27 2.63 16 52 H 0.06 1.29 7.87 -51.93 -0.41 0.88 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -32.50 406.80 -9.02 -41.52 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -8.59 Total: 10.52 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.77 Total: -1.49 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.15 Total: -61.75 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.50 -9.02 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026419394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.684 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds