Wall clock time and date at job start Wed Apr 1 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 C 1.50706 * 109.47162 * 119.99753 * 2 1 3 5 5 N 1.30448 * 125.98605 * 300.14428 * 4 2 1 6 6 N 1.39936 * 108.89004 * 180.26459 * 5 4 2 7 7 C 1.46498 * 125.75033 * 179.77524 * 6 5 4 8 8 C 1.34256 * 108.49743 * 359.75040 * 6 5 4 9 9 C 1.38048 * 107.41644 * 359.97438 * 8 6 5 10 10 C 1.47420 * 126.41703 * 179.97438 * 9 8 6 11 11 O 1.21607 * 120.00494 * 213.72712 * 10 9 8 12 12 N 1.34783 * 119.99944 * 33.72871 * 10 9 8 13 13 C 1.47206 * 126.70059 * 5.65107 * 12 10 9 14 14 C 1.53776 * 106.38302 * 148.69493 * 13 12 10 15 15 H 1.08997 * 112.38729 * 256.84966 * 14 13 12 16 16 C 1.54329 * 109.06583 * 132.42592 * 14 13 12 17 17 C 1.55055 * 103.93487 * 222.03768 * 16 14 13 18 18 C 1.55055 * 102.11242 * 40.05534 * 17 16 14 19 19 H 1.08994 * 110.53671 * 201.32669 * 18 17 16 20 20 N 1.46503 * 110.65092 * 78.61388 * 18 17 16 21 21 C 1.36931 * 119.99953 * 120.61808 * 20 18 17 22 22 H 1.08002 * 120.00283 * 359.97438 * 21 20 18 23 23 C 1.38817 * 120.00162 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99930 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00116 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47089 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47300 * 120.00057 * 25 23 21 28 28 H 1.48503 * 109.47233 * 240.00455 * 25 23 21 29 29 C 1.54321 * 103.93634 * 319.94502 * 18 17 16 30 30 H 1.09004 * 111.68484 * 262.79235 * 29 18 17 31 31 C 1.47212 * 126.70069 * 185.61912 * 12 10 9 32 32 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46719 * 299.99956 * 1 2 3 34 34 H 1.09001 * 109.47225 * 60.00172 * 1 2 3 35 35 H 1.08995 * 109.46999 * 239.99509 * 2 1 3 36 36 H 1.08998 * 109.47173 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46864 * 300.00049 * 3 2 1 38 38 H 1.08996 * 109.47085 * 59.99514 * 3 2 1 39 39 H 1.09000 * 109.47331 * 269.97182 * 7 6 5 40 40 H 1.09002 * 109.47529 * 29.97343 * 7 6 5 41 41 H 1.09005 * 109.47528 * 149.96897 * 7 6 5 42 42 H 1.08003 * 126.29596 * 180.02562 * 8 6 5 43 43 H 1.09003 * 110.08092 * 29.46274 * 13 12 10 44 44 H 1.09003 * 110.07420 * 267.92638 * 13 12 10 45 45 H 1.09002 * 110.53061 * 340.64870 * 16 14 13 46 46 H 1.08990 * 110.53303 * 103.42371 * 16 14 13 47 47 H 1.09001 * 110.90338 * 158.25954 * 17 16 14 48 48 H 1.08999 * 110.90084 * 281.85373 * 17 16 14 49 49 H 0.96997 * 120.00388 * 300.60980 * 20 18 17 50 50 H 0.96999 * 119.99861 * 180.02562 * 24 23 21 51 51 H 1.08998 * 110.07197 * 92.07614 * 31 12 10 52 52 H 1.09000 * 110.07764 * 330.53060 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7881 -0.3695 2.4658 6 7 2.4337 -1.2701 3.3204 7 6 2.4094 -1.2280 4.7846 8 6 3.0786 -2.1794 2.5724 9 6 2.8476 -1.8643 1.2484 10 6 3.3611 -2.5912 0.0732 11 8 3.6415 -1.9843 -0.9426 12 7 3.5197 -3.9287 0.1245 13 6 3.1219 -4.8202 1.2263 14 6 2.7555 -6.1680 0.5831 15 1 1.6779 -6.3195 0.5218 16 6 3.4478 -7.3044 1.3648 17 6 3.9620 -8.2601 0.2573 18 6 4.4716 -7.2668 -0.8187 19 1 4.5166 -7.7502 -1.7946 20 7 5.7855 -6.7343 -0.4494 21 6 6.8587 -6.9238 -1.2785 22 1 6.7367 -7.4662 -2.2044 23 6 8.1036 -6.4188 -0.9288 24 7 8.2525 -5.7582 0.1998 25 14 9.5678 -6.6780 -2.0595 26 1 9.1395 -7.4465 -3.2559 27 1 10.1046 -5.3602 -2.4843 28 1 10.6232 -7.4330 -1.3374 29 6 3.4130 -6.1439 -0.8190 30 1 2.6787 -6.2828 -1.6125 31 6 4.1239 -4.7834 -0.9107 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 3.2403 -0.6213 5.1445 40 1 1.4687 -0.7914 5.1200 41 1 2.5010 -2.2401 5.1788 42 1 3.6690 -3.0062 2.9390 43 1 2.2584 -4.4078 1.7483 44 1 3.9521 -4.9503 1.9206 45 1 4.2805 -6.9139 1.9498 46 1 2.7329 -7.8157 2.0093 47 1 4.7760 -8.8830 0.6283 48 1 3.1509 -8.8745 -0.1335 49 1 5.8952 -6.2474 0.3823 50 1 9.1223 -5.4051 0.4439 51 1 5.1902 -4.9049 -0.7200 52 1 3.9672 -4.3450 -1.8963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026419394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:54 Heat of formation + Delta-G solvation = 34.491928 kcal Electronic energy + Delta-G solvation = -31963.200611 eV Core-core repulsion = 27963.568175 eV Total energy + Delta-G solvation = -3999.632436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 33.45 seconds Orbital eigenvalues (eV) -42.54643 -41.23625 -39.37657 -36.87345 -36.35096 -35.01717 -33.42326 -32.63068 -31.84706 -30.13215 -29.74484 -28.05325 -27.86153 -26.59202 -25.43560 -24.92822 -23.46864 -22.70468 -21.21437 -20.59134 -20.08763 -19.76256 -19.35979 -18.21860 -17.45325 -17.01064 -16.56417 -16.52993 -16.31335 -15.90436 -15.78894 -15.51823 -15.19815 -15.05796 -14.82585 -14.36861 -14.32948 -14.16969 -13.92001 -13.57917 -13.51781 -13.34019 -13.25701 -13.00234 -12.98186 -12.85919 -12.45244 -12.31426 -12.16246 -12.13908 -12.10037 -11.96788 -11.89121 -11.65865 -11.51082 -11.44221 -11.39184 -11.29734 -10.92621 -10.78765 -10.35482 -9.77234 -9.50106 -8.85491 -7.92278 -5.16990 0.54571 1.10843 1.43454 1.46375 1.49052 1.56581 2.11754 2.28452 2.57633 3.30918 3.41382 3.50185 3.61163 3.65771 3.87516 3.94108 4.04018 4.15566 4.21958 4.22897 4.36111 4.40758 4.43777 4.44237 4.52997 4.57087 4.60151 4.64221 4.69939 4.71041 4.77017 4.81203 4.84019 4.91446 4.93040 4.93926 5.07154 5.07814 5.16430 5.20248 5.26131 5.31324 5.40401 5.46972 5.47313 5.51554 5.53501 5.62885 5.69180 5.89608 6.30871 6.53042 6.70559 7.24561 7.38353 8.15019 8.37167 9.30492 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.003219 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.614403 B = 8695.394854 C = 9264.601911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.028 4.028 3 C -0.131 4.131 4 C 0.124 3.876 5 N -0.309 5.309 6 N -0.356 5.356 7 C 0.087 3.913 8 C 0.115 3.885 9 C -0.309 4.309 10 C 0.599 3.401 11 O -0.593 6.593 12 N -0.608 5.608 13 C 0.106 3.894 14 C -0.088 4.088 15 H 0.110 0.890 16 C -0.104 4.104 17 C -0.133 4.133 18 C 0.166 3.834 19 H 0.059 0.941 20 N -0.714 5.714 21 C -0.235 4.235 22 H 0.075 0.925 23 C -0.069 4.069 24 N -0.963 5.963 25 Si 0.960 3.040 26 H -0.267 1.267 27 H -0.303 1.303 28 H -0.294 1.294 29 C -0.111 4.111 30 H 0.092 0.908 31 C 0.100 3.900 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.208 0.792 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.091 0.909 47 H 0.050 0.950 48 H 0.087 0.913 49 H 0.377 0.623 50 H 0.247 0.753 51 H 0.085 0.915 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.161 4.579 10.560 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 C -0.189 4.189 4 C -0.043 4.043 5 N -0.130 5.130 6 N -0.134 5.134 7 C -0.052 4.052 8 C -0.038 4.038 9 C -0.324 4.324 10 C 0.390 3.610 11 O -0.475 6.475 12 N -0.339 5.339 13 C -0.016 4.016 14 C -0.107 4.107 15 H 0.128 0.872 16 C -0.142 4.142 17 C -0.172 4.172 18 C 0.056 3.944 19 H 0.077 0.923 20 N -0.353 5.353 21 C -0.367 4.367 22 H 0.093 0.907 23 C -0.262 4.262 24 N -0.614 5.614 25 Si 0.790 3.210 26 H -0.191 1.191 27 H -0.231 1.231 28 H -0.221 1.221 29 C -0.133 4.133 30 H 0.111 0.889 31 C -0.023 4.023 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.224 0.776 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.210 0.790 50 H 0.056 0.944 51 H 0.102 0.898 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.503 5.752 10.859 23.052 hybrid contribution 2.146 -0.384 -1.037 2.414 sum -17.358 5.368 9.823 20.654 Atomic orbital electron populations 1.21730 0.92070 1.01876 1.03109 1.19798 0.97227 0.96124 0.91699 1.21698 1.00154 0.93979 1.03024 1.22460 0.94948 0.92841 0.94077 1.77019 1.21130 1.15085 0.99795 1.48683 1.36209 1.20012 1.08469 1.22428 1.05626 1.06575 0.70598 1.23412 0.95436 0.95097 0.89844 1.20120 1.15206 1.04061 0.92967 1.17334 0.76722 0.80276 0.86631 1.90694 1.54276 1.67952 1.34627 1.48458 1.59411 1.05208 1.20802 1.22477 1.00189 0.89638 0.89272 1.22583 1.00896 0.93672 0.93521 0.87178 1.22433 0.99310 0.95358 0.97093 1.23034 0.99986 0.97424 0.96781 1.21315 0.84005 0.92119 0.97010 0.92271 1.42540 1.04342 1.64616 1.23791 1.19685 0.88454 1.27517 1.01021 0.90677 1.25361 1.00124 1.01789 0.98923 1.69782 1.23271 1.43528 1.24844 0.85266 0.80355 0.76546 0.78798 1.19105 1.23090 1.22132 1.23028 0.97578 0.94214 0.98478 0.88939 1.22392 1.00039 0.89430 0.90436 0.93309 0.91745 0.90325 0.90607 0.94453 0.90247 0.91722 0.89258 0.87905 0.85973 0.77588 0.88961 0.91231 0.92812 0.89077 0.93111 0.89471 0.78975 0.94362 0.89771 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.18 71.98 0.66 -2.13 16 2 C -0.03 -0.77 3.24 -11.54 -0.04 -0.81 16 3 C -0.13 -3.19 9.18 71.98 0.66 -2.53 16 4 C 0.12 3.70 5.76 43.52 0.25 3.95 16 5 N -0.31 -8.20 12.50 -46.67 -0.58 -8.79 16 6 N -0.36 -7.41 3.98 -367.77 -1.46 -8.87 16 7 C 0.09 0.83 11.44 127.77 1.46 2.29 16 8 C 0.11 2.69 9.71 84.28 0.82 3.51 16 9 C -0.31 -9.73 5.57 -20.15 -0.11 -9.84 16 10 C 0.60 23.20 7.63 86.66 0.66 23.86 16 11 O -0.59 -27.84 15.61 -4.05 -0.06 -27.90 16 12 N -0.61 -21.36 3.32 -819.05 -2.72 -24.08 16 13 C 0.11 2.72 5.05 86.51 0.44 3.16 16 14 C -0.09 -2.09 3.91 -9.44 -0.04 -2.13 16 15 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.10 -2.45 6.17 31.75 0.20 -2.25 16 17 C -0.13 -3.72 6.61 32.00 0.21 -3.50 16 18 C 0.17 5.87 3.53 46.14 0.16 6.03 16 19 H 0.06 2.16 7.84 -2.39 -0.02 2.14 16 20 N -0.71 -33.06 2.98 -317.50 -0.95 -34.00 16 21 C -0.23 -12.48 9.89 84.04 0.83 -11.65 16 22 H 0.08 3.88 7.68 -2.91 -0.02 3.86 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.96 -57.60 13.06 21.65 0.28 -57.32 16 25 Si 0.96 46.30 29.55 68.60 2.03 48.32 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 28 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 29 C -0.11 -3.48 3.89 -9.44 -0.04 -3.52 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 31 C 0.10 3.99 6.39 86.50 0.55 4.54 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 2.53 6.33 -2.39 -0.02 2.51 16 36 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.21 3.70 6.92 -2.91 -0.02 3.68 16 43 H 0.09 1.89 6.86 -2.39 -0.02 1.87 16 44 H 0.07 1.79 6.79 -2.39 -0.02 1.77 16 45 H 0.05 1.47 7.00 -2.39 -0.02 1.46 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.38 18.77 7.03 -92.71 -0.65 18.11 16 50 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 51 H 0.08 4.13 5.22 -2.39 -0.01 4.12 16 52 H 0.04 1.62 7.87 -2.39 -0.02 1.60 16 Total: -1.00 -75.88 406.80 3.95 -71.93 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.27 Total: 35.14 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 7.15 Total: 5.56 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -5.43 Total: -133.05 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.06 Total: -27.90 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -75.88 3.95 -71.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026419394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.424 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 33.45 seconds