Wall clock time and date at job start Wed Apr 1 2020 04:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47423 * 2 1 4 4 N 1.30503 * 125.65153 * 270.18194 * 3 2 1 5 5 C 1.34126 * 109.25567 * 180.28849 * 4 3 2 6 6 C 1.34659 * 108.02203 * 359.72358 * 5 4 3 7 7 N 1.35042 * 125.65048 * 89.99752 * 3 2 1 8 8 C 1.46500 * 126.39829 * 359.97438 * 7 3 2 9 9 H 1.09004 * 109.47153 * 359.70545 * 8 7 3 10 10 C 1.52993 * 109.47602 * 119.70921 * 8 7 3 11 11 C 1.53001 * 109.46906 * 239.71342 * 8 7 3 12 12 C 1.50699 * 109.47231 * 175.00032 * 11 8 7 13 13 O 1.21290 * 119.99822 * 359.97438 * 12 11 8 14 14 N 1.34775 * 120.00486 * 179.97438 * 12 11 8 15 15 C 1.47162 * 120.71374 * 179.97438 * 14 12 11 16 16 C 1.53888 * 108.06885 * 132.77776 * 15 14 12 17 17 H 1.09004 * 112.09602 * 181.88843 * 16 15 14 18 18 C 1.54547 * 107.83307 * 305.84964 * 16 15 14 19 19 C 1.55859 * 104.09429 * 89.28051 * 18 16 15 20 20 C 1.54552 * 104.99875 * 359.97438 * 19 18 16 21 21 H 1.09003 * 112.17946 * 146.42427 * 20 19 18 22 22 C 1.48457 * 120.84872 * 0.31773 * 14 12 11 23 23 N 1.48302 * 104.35605 * 24.71701 * 20 19 18 24 24 C 1.36939 * 128.07537 * 139.04558 * 23 20 19 25 25 H 1.07998 * 120.00164 * 344.70743 * 24 23 20 26 26 C 1.38816 * 119.99762 * 164.70310 * 24 23 20 27 27 N 1.31618 * 120.00391 * 350.21465 * 26 24 23 28 28 Si 1.86797 * 119.99833 * 170.21040 * 26 24 23 29 29 H 1.48506 * 109.46897 * 90.00309 * 28 26 24 30 30 H 1.48501 * 109.47591 * 210.00311 * 28 26 24 31 31 H 1.48499 * 109.47265 * 330.00455 * 28 26 24 32 32 H 1.09000 * 109.47377 * 59.99537 * 1 2 3 33 33 H 1.08997 * 109.47219 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46700 * 300.00125 * 1 2 3 35 35 H 1.09003 * 109.46700 * 239.99875 * 2 1 3 36 36 H 1.08994 * 109.47092 * 120.00198 * 2 1 3 37 37 H 1.07999 * 125.98395 * 179.72216 * 5 4 3 38 38 H 1.08001 * 126.59367 * 180.02562 * 6 5 4 39 39 H 1.09005 * 109.47218 * 300.00199 * 10 8 7 40 40 H 1.09004 * 109.47174 * 59.99636 * 10 8 7 41 41 H 1.08996 * 109.47493 * 180.02562 * 10 8 7 42 42 H 1.09001 * 109.47446 * 54.99378 * 11 8 7 43 43 H 1.08999 * 109.46723 * 294.99292 * 11 8 7 44 44 H 1.09006 * 109.74658 * 13.12986 * 15 14 12 45 45 H 1.08991 * 109.75385 * 252.43973 * 15 14 12 46 46 H 1.08997 * 110.36196 * 207.91445 * 18 16 15 47 47 H 1.09000 * 110.36403 * 330.23052 * 18 16 15 48 48 H 1.09005 * 110.28192 * 241.09808 * 19 18 16 49 49 H 1.08993 * 110.39516 * 118.92680 * 19 18 16 50 50 H 1.09003 * 110.53453 * 107.72270 * 22 14 12 51 51 H 1.09003 * 109.56775 * 346.61135 * 22 14 12 52 52 H 0.96994 * 120.00497 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2828 2.1390 -1.0604 5 6 2.7190 3.3496 -0.6819 6 6 2.7338 3.3849 0.6642 7 7 2.2948 2.1629 1.0973 8 6 2.1437 1.7374 2.4910 9 1 1.7751 0.7120 2.5199 10 6 3.4989 1.8122 3.1970 11 6 1.1478 2.6574 3.2000 12 6 0.8989 2.1475 4.5961 13 8 1.4622 1.1465 4.9855 14 7 0.0503 2.8038 5.4120 15 6 -0.2047 2.3194 6.7780 16 6 -0.0993 3.5183 7.7370 17 1 -0.2453 3.2257 8.7768 18 6 1.2738 4.1892 7.5069 19 6 1.0013 5.2364 6.3851 20 6 -0.5015 5.0884 6.0562 21 1 -0.9572 6.0385 5.7772 22 6 -0.6546 4.0269 4.9525 23 7 -1.0947 4.5240 7.2927 24 6 -2.2836 4.8548 7.8862 25 1 -2.7929 5.7646 7.6048 26 6 -2.8343 4.0205 8.8494 27 7 -2.3223 2.8257 9.0558 28 14 -4.3019 4.5938 9.8528 29 1 -5.5570 4.2087 9.1585 30 1 -4.2633 3.9580 11.1943 31 1 -4.2525 6.0703 10.0032 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.0076 4.1548 -1.3411 38 1 3.0339 4.2175 1.2831 39 1 4.2085 1.1567 2.6919 40 1 3.8676 2.8376 3.1681 41 1 3.3866 1.4952 4.2338 42 1 0.2092 2.6726 2.6459 43 1 1.5570 3.6664 3.2494 44 1 0.5369 1.5669 7.0463 45 1 -1.2041 1.8885 6.8355 46 1 1.6118 4.6834 8.4177 47 1 2.0065 3.4513 7.1803 48 1 1.6056 5.0139 5.5056 49 1 1.2135 6.2429 6.7455 50 1 -1.7115 3.8190 4.7851 51 1 -0.1987 4.3862 4.0299 52 1 -2.7068 2.2429 9.7291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029314007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:00 Heat of formation + Delta-G solvation = 56.453385 kcal Electronic energy + Delta-G solvation = -32278.033889 eV Core-core repulsion = 28279.353773 eV Total energy + Delta-G solvation = -3998.680115 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.27847 -40.16699 -38.19641 -35.63345 -33.94926 -33.85051 -32.43083 -31.22602 -30.47911 -29.35047 -28.72259 -28.23166 -26.03282 -24.19398 -23.95797 -23.74288 -22.91398 -21.14139 -19.95224 -19.75961 -19.29852 -18.52436 -17.69046 -16.73442 -16.11425 -15.73232 -15.63633 -15.15562 -14.87931 -14.75561 -14.61496 -14.18760 -13.83446 -13.69220 -13.58208 -13.49592 -13.17743 -13.07500 -12.88550 -12.71365 -12.42886 -12.14717 -11.96074 -11.79394 -11.73719 -11.66921 -11.50829 -11.40746 -11.22721 -11.06139 -10.95742 -10.87036 -10.43470 -10.12492 -10.06150 -9.97130 -9.80094 -9.68243 -9.67005 -9.37374 -8.87507 -8.42539 -8.18791 -6.94579 -5.93299 -3.29152 1.97533 2.59100 2.88877 3.08771 3.29438 3.36223 3.37423 3.47320 4.27911 4.33043 4.33746 4.56257 4.61819 4.77185 4.90723 4.99628 5.08366 5.09528 5.21960 5.22966 5.30904 5.34713 5.44118 5.46946 5.50912 5.55136 5.62592 5.64256 5.66162 5.70709 5.73688 5.83775 5.83923 6.00437 6.08607 6.09750 6.20425 6.27036 6.31423 6.39789 6.51563 6.57807 6.68774 6.71023 6.75083 6.84420 7.12620 7.19085 7.39886 7.59969 7.90823 8.04421 8.05502 8.49659 8.96208 9.58627 10.34219 11.19572 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.002761 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.347753 B =10140.180377 C =10392.747340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C 0.208 3.792 4 N -0.494 5.494 5 C -0.033 4.033 6 C -0.054 4.054 7 N -0.446 5.446 8 C 0.147 3.853 9 H 0.110 0.890 10 C -0.164 4.164 11 C -0.148 4.148 12 C 0.512 3.488 13 O -0.558 6.558 14 N -0.587 5.587 15 C 0.112 3.888 16 C 0.167 3.833 17 H 0.118 0.882 18 C -0.136 4.136 19 C -0.121 4.121 20 C 0.133 3.867 21 H 0.078 0.922 22 C 0.094 3.906 23 N -0.583 5.583 24 C -0.230 4.230 25 H 0.077 0.923 26 C -0.001 4.001 27 N -0.912 5.912 28 Si 0.912 3.088 29 H -0.288 1.288 30 H -0.289 1.289 31 H -0.281 1.281 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.056 0.944 50 H 0.070 0.930 51 H 0.064 0.936 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.090 -0.468 -13.352 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.054 4.054 4 N -0.213 5.213 5 C -0.181 4.181 6 C -0.188 4.188 7 N -0.129 5.129 8 C 0.044 3.956 9 H 0.128 0.872 10 C -0.221 4.221 11 C -0.189 4.189 12 C 0.298 3.702 13 O -0.438 6.438 14 N -0.319 5.319 15 C -0.011 4.011 16 C 0.059 3.941 17 H 0.136 0.864 18 C -0.175 4.175 19 C -0.160 4.160 20 C 0.024 3.976 21 H 0.096 0.904 22 C -0.031 4.031 23 N -0.304 5.304 24 C -0.358 4.358 25 H 0.094 0.906 26 C -0.199 4.199 27 N -0.557 5.557 28 Si 0.742 3.258 29 H -0.215 1.215 30 H -0.216 1.216 31 H -0.206 1.206 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.184 0.816 38 H 0.187 0.813 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.088 0.912 51 H 0.082 0.918 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.043 -1.343 -13.574 16.366 hybrid contribution -0.751 0.816 1.258 1.677 sum 8.291 -0.527 -12.316 14.857 Atomic orbital electron populations 1.21743 0.93864 1.02368 1.02546 1.19978 0.96532 0.87535 1.03909 1.23250 1.04116 0.96619 0.81417 1.70222 1.18465 1.04313 1.28316 1.22227 1.06775 0.96348 0.92747 1.22609 1.09246 0.90225 0.96682 1.45655 1.48184 1.11789 1.07240 1.21191 0.97383 0.99827 0.77186 0.87234 1.22268 0.94265 1.02354 1.03250 1.21980 1.00866 1.00907 0.95118 1.20022 0.79827 0.83980 0.86333 1.90635 1.50729 1.25996 1.76480 1.48540 1.41923 1.26569 1.14820 1.22481 1.01587 0.97967 0.79088 1.21864 0.85191 0.87823 0.99177 0.86449 1.22900 0.99215 0.97828 0.97593 1.22720 0.96685 0.98759 0.97877 1.21941 0.92806 0.94703 0.88128 0.90370 1.22818 0.96891 0.86039 0.97387 1.45154 1.19098 1.43443 1.22699 1.18980 0.96121 1.03393 1.17301 0.90569 1.24845 0.98810 0.95345 1.00869 1.69831 1.42827 1.07367 1.35722 0.86137 0.82102 0.77952 0.79601 1.21516 1.21552 1.20638 0.91897 0.91565 0.92746 0.88842 0.90355 0.81601 0.81261 0.92219 0.92365 0.88128 0.88704 0.88487 0.91229 0.90187 0.92738 0.92752 0.93239 0.92554 0.91192 0.91773 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.90 37.16 0.37 -0.98 16 2 C -0.04 -0.39 6.08 -27.88 -0.17 -0.56 16 3 C 0.21 2.54 7.16 -155.41 -1.11 1.43 16 4 N -0.49 -6.77 11.25 -10.82 -0.12 -6.89 16 5 C -0.03 -0.39 11.87 -17.82 -0.21 -0.60 16 6 C -0.05 -0.58 10.70 -16.56 -0.18 -0.76 16 7 N -0.45 -5.05 2.61 -106.83 -0.28 -5.33 16 8 C 0.15 1.65 2.64 -67.93 -0.18 1.47 16 9 H 0.11 1.29 6.49 -51.93 -0.34 0.95 16 10 C -0.16 -1.80 8.99 37.15 0.33 -1.46 16 11 C -0.15 -1.73 3.57 -27.88 -0.10 -1.83 16 12 C 0.51 7.97 7.43 -10.99 -0.08 7.89 16 13 O -0.56 -10.03 13.43 5.55 0.07 -9.95 16 14 N -0.59 -10.07 2.27 -170.46 -0.39 -10.46 16 15 C 0.11 2.29 5.80 -3.22 -0.02 2.27 16 16 C 0.17 3.57 3.09 -65.66 -0.20 3.37 16 17 H 0.12 2.90 6.37 -51.93 -0.33 2.57 16 18 C -0.14 -2.45 6.31 -24.39 -0.15 -2.61 16 19 C -0.12 -1.94 6.23 -24.39 -0.15 -2.09 16 20 C 0.13 2.35 4.27 -65.66 -0.28 2.07 16 21 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 22 C 0.09 1.48 5.91 -2.50 -0.01 1.47 16 23 N -0.58 -13.04 2.80 -152.59 -0.43 -13.47 16 24 C -0.23 -5.77 10.37 -15.06 -0.16 -5.92 16 25 H 0.08 1.86 7.85 -52.49 -0.41 1.45 16 26 C 0.00 -0.03 5.41 -17.43 -0.09 -0.13 16 27 N -0.91 -24.23 10.40 55.49 0.58 -23.65 16 28 Si 0.91 20.61 29.56 -169.99 -5.03 15.58 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 30 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 31 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.68 7.08 -51.93 -0.37 0.32 16 37 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 41 H 0.10 1.31 5.95 -51.93 -0.31 1.00 16 42 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 43 H 0.10 1.01 7.56 -51.93 -0.39 0.62 16 44 H 0.07 1.44 7.11 -51.93 -0.37 1.07 16 45 H 0.08 1.90 7.79 -51.93 -0.40 1.50 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 48 H 0.05 0.70 7.86 -51.93 -0.41 0.29 16 49 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.06 0.80 6.13 -51.93 -0.32 0.48 16 52 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -29.02 401.11 -10.62 -39.64 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.67 Total: 5.45 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.40 Total: 3.04 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.64 Total: -59.80 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.02 -10.62 -39.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029314007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.089 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds