Wall clock time and date at job start Wed Apr 1 2020 04:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47423 * 2 1 4 4 N 1.30503 * 125.65153 * 270.18194 * 3 2 1 5 5 C 1.34126 * 109.25567 * 180.28849 * 4 3 2 6 6 C 1.34659 * 108.02203 * 359.72358 * 5 4 3 7 7 N 1.35042 * 125.65048 * 89.99752 * 3 2 1 8 8 C 1.46500 * 126.39829 * 359.97438 * 7 3 2 9 9 H 1.09004 * 109.47153 * 359.70545 * 8 7 3 10 10 C 1.52993 * 109.47602 * 119.70921 * 8 7 3 11 11 C 1.53001 * 109.46906 * 239.71342 * 8 7 3 12 12 C 1.50699 * 109.47231 * 175.00032 * 11 8 7 13 13 O 1.21290 * 119.99822 * 359.97438 * 12 11 8 14 14 N 1.34775 * 120.00486 * 179.97438 * 12 11 8 15 15 C 1.47162 * 120.71374 * 179.97438 * 14 12 11 16 16 C 1.53888 * 108.06885 * 132.77776 * 15 14 12 17 17 H 1.09004 * 112.09602 * 181.88843 * 16 15 14 18 18 C 1.54547 * 107.83307 * 305.84964 * 16 15 14 19 19 C 1.55859 * 104.09429 * 89.28051 * 18 16 15 20 20 C 1.54552 * 104.99875 * 359.97438 * 19 18 16 21 21 H 1.09003 * 112.17946 * 146.42427 * 20 19 18 22 22 C 1.48457 * 120.84872 * 0.31773 * 14 12 11 23 23 N 1.48302 * 104.35605 * 24.71701 * 20 19 18 24 24 C 1.36939 * 128.07537 * 139.04558 * 23 20 19 25 25 H 1.07998 * 120.00164 * 344.70743 * 24 23 20 26 26 C 1.38816 * 119.99762 * 164.70310 * 24 23 20 27 27 N 1.31618 * 120.00391 * 350.21465 * 26 24 23 28 28 Si 1.86797 * 119.99833 * 170.21040 * 26 24 23 29 29 H 1.48506 * 109.46897 * 90.00309 * 28 26 24 30 30 H 1.48501 * 109.47591 * 210.00311 * 28 26 24 31 31 H 1.48499 * 109.47265 * 330.00455 * 28 26 24 32 32 H 1.09000 * 109.47377 * 59.99537 * 1 2 3 33 33 H 1.08997 * 109.47219 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46700 * 300.00125 * 1 2 3 35 35 H 1.09003 * 109.46700 * 239.99875 * 2 1 3 36 36 H 1.08994 * 109.47092 * 120.00198 * 2 1 3 37 37 H 1.07999 * 125.98395 * 179.72216 * 5 4 3 38 38 H 1.08001 * 126.59367 * 180.02562 * 6 5 4 39 39 H 1.09005 * 109.47218 * 300.00199 * 10 8 7 40 40 H 1.09004 * 109.47174 * 59.99636 * 10 8 7 41 41 H 1.08996 * 109.47493 * 180.02562 * 10 8 7 42 42 H 1.09001 * 109.47446 * 54.99378 * 11 8 7 43 43 H 1.08999 * 109.46723 * 294.99292 * 11 8 7 44 44 H 1.09006 * 109.74658 * 13.12986 * 15 14 12 45 45 H 1.08991 * 109.75385 * 252.43973 * 15 14 12 46 46 H 1.08997 * 110.36196 * 207.91445 * 18 16 15 47 47 H 1.09000 * 110.36403 * 330.23052 * 18 16 15 48 48 H 1.09005 * 110.28192 * 241.09808 * 19 18 16 49 49 H 1.08993 * 110.39516 * 118.92680 * 19 18 16 50 50 H 1.09003 * 110.53453 * 107.72270 * 22 14 12 51 51 H 1.09003 * 109.56775 * 346.61135 * 22 14 12 52 52 H 0.96994 * 120.00497 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2828 2.1390 -1.0604 5 6 2.7190 3.3496 -0.6819 6 6 2.7338 3.3849 0.6642 7 7 2.2948 2.1629 1.0973 8 6 2.1437 1.7374 2.4910 9 1 1.7751 0.7120 2.5199 10 6 3.4989 1.8122 3.1970 11 6 1.1478 2.6574 3.2000 12 6 0.8989 2.1475 4.5961 13 8 1.4622 1.1465 4.9855 14 7 0.0503 2.8038 5.4120 15 6 -0.2047 2.3194 6.7780 16 6 -0.0993 3.5183 7.7370 17 1 -0.2453 3.2257 8.7768 18 6 1.2738 4.1892 7.5069 19 6 1.0013 5.2364 6.3851 20 6 -0.5015 5.0884 6.0562 21 1 -0.9572 6.0385 5.7772 22 6 -0.6546 4.0269 4.9525 23 7 -1.0947 4.5240 7.2927 24 6 -2.2836 4.8548 7.8862 25 1 -2.7929 5.7646 7.6048 26 6 -2.8343 4.0205 8.8494 27 7 -2.3223 2.8257 9.0558 28 14 -4.3019 4.5938 9.8528 29 1 -5.5570 4.2087 9.1585 30 1 -4.2633 3.9580 11.1943 31 1 -4.2525 6.0703 10.0032 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.0076 4.1548 -1.3411 38 1 3.0339 4.2175 1.2831 39 1 4.2085 1.1567 2.6919 40 1 3.8676 2.8376 3.1681 41 1 3.3866 1.4952 4.2338 42 1 0.2092 2.6726 2.6459 43 1 1.5570 3.6664 3.2494 44 1 0.5369 1.5669 7.0463 45 1 -1.2041 1.8885 6.8355 46 1 1.6118 4.6834 8.4177 47 1 2.0065 3.4513 7.1803 48 1 1.6056 5.0139 5.5056 49 1 1.2135 6.2429 6.7455 50 1 -1.7115 3.8190 4.7851 51 1 -0.1987 4.3862 4.0299 52 1 -2.7068 2.2429 9.7291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029314007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:51 Heat of formation + Delta-G solvation = 42.747340 kcal Electronic energy + Delta-G solvation = -32278.628228 eV Core-core repulsion = 28279.353773 eV Total energy + Delta-G solvation = -3999.274454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 11.09 seconds Orbital eigenvalues (eV) -43.12855 -41.53600 -39.57122 -36.61900 -35.40170 -34.69484 -34.12093 -32.52871 -31.61944 -31.00125 -29.54486 -29.27368 -27.48960 -25.51095 -25.44713 -24.76862 -23.89743 -22.08401 -21.28925 -21.19654 -20.36621 -19.89537 -18.80594 -18.11308 -17.42051 -17.00756 -16.73899 -16.48384 -16.14054 -16.03212 -15.62961 -15.43725 -15.02981 -14.80534 -14.68713 -14.48434 -14.41566 -14.33290 -14.12303 -13.80670 -13.55634 -13.38984 -13.23616 -13.17716 -12.93750 -12.74730 -12.71586 -12.59044 -12.51243 -12.47102 -12.17685 -11.99586 -11.95836 -11.77718 -11.49565 -11.45552 -11.15008 -10.98646 -10.80213 -10.64119 -10.51475 -9.71555 -9.24277 -8.70094 -7.85881 -5.20788 1.14402 1.47678 1.49822 1.57253 1.64324 1.67567 2.20972 2.23514 2.50815 3.34176 3.41808 3.45066 3.51463 3.58378 3.73444 3.91175 4.05978 4.06890 4.15601 4.24700 4.26131 4.34120 4.35453 4.37782 4.42980 4.48754 4.51584 4.62853 4.69584 4.70463 4.74087 4.84174 4.87439 4.89199 4.98139 4.99484 5.06239 5.08367 5.11894 5.14869 5.20903 5.27914 5.29929 5.41944 5.47631 5.55145 5.58568 5.84068 5.91717 6.23459 6.28308 6.59409 7.06367 7.20317 7.21618 7.73692 8.51846 9.25530 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.002761 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.347753 B =10140.180377 C =10392.747340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C 0.195 3.805 4 N -0.527 5.527 5 C -0.053 4.053 6 C -0.048 4.048 7 N -0.445 5.445 8 C 0.153 3.847 9 H 0.101 0.899 10 C -0.157 4.157 11 C -0.135 4.135 12 C 0.514 3.486 13 O -0.582 6.582 14 N -0.592 5.592 15 C 0.130 3.870 16 C 0.164 3.836 17 H 0.074 0.926 18 C -0.127 4.127 19 C -0.109 4.109 20 C 0.126 3.874 21 H 0.092 0.908 22 C 0.100 3.900 23 N -0.605 5.605 24 C -0.231 4.231 25 H 0.081 0.919 26 C -0.056 4.056 27 N -0.937 5.937 28 Si 0.968 3.032 29 H -0.290 1.290 30 H -0.300 1.300 31 H -0.272 1.272 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.184 0.816 38 H 0.200 0.800 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.051 0.949 51 H 0.113 0.887 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.369 1.500 -15.397 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.067 4.067 4 N -0.246 5.246 5 C -0.200 4.200 6 C -0.181 4.181 7 N -0.128 5.128 8 C 0.050 3.950 9 H 0.119 0.881 10 C -0.215 4.215 11 C -0.176 4.176 12 C 0.303 3.697 13 O -0.464 6.464 14 N -0.323 5.323 15 C 0.006 3.994 16 C 0.056 3.944 17 H 0.092 0.908 18 C -0.166 4.166 19 C -0.147 4.147 20 C 0.018 3.982 21 H 0.110 0.890 22 C -0.024 4.024 23 N -0.327 5.327 24 C -0.360 4.360 25 H 0.099 0.901 26 C -0.250 4.250 27 N -0.585 5.585 28 Si 0.798 3.202 29 H -0.218 1.218 30 H -0.227 1.227 31 H -0.197 1.197 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.201 0.799 38 H 0.217 0.783 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.143 0.857 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.131 0.869 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.344 0.657 -15.669 18.787 hybrid contribution -1.104 0.185 1.833 2.148 sum 9.240 0.842 -13.835 16.658 Atomic orbital electron populations 1.21695 0.93575 1.03097 1.01605 1.20062 0.96710 0.86709 1.04531 1.23615 1.04260 0.97388 0.81487 1.70205 1.19535 1.05512 1.29364 1.22650 1.07170 0.96338 0.93860 1.23081 1.07942 0.90401 0.96693 1.45647 1.48206 1.12073 1.06861 1.21062 0.97372 0.99341 0.77193 0.88142 1.22177 0.94160 1.03362 1.01808 1.21924 1.01678 1.02068 0.91904 1.20649 0.78490 0.83221 0.87368 1.90641 1.51379 1.27117 1.77252 1.48498 1.42779 1.27422 1.13645 1.21900 0.98699 0.97318 0.81518 1.21689 0.87169 0.88422 0.97129 0.90794 1.22771 0.96860 0.98340 0.98675 1.22657 0.95529 0.98485 0.98071 1.22244 0.93674 0.95491 0.86742 0.88992 1.22797 0.96384 0.84733 0.98501 1.45336 1.18673 1.43800 1.24889 1.19288 0.96770 1.03091 1.16805 0.90143 1.25509 1.01323 0.95716 1.02462 1.70027 1.43999 1.08259 1.36168 0.85248 0.79528 0.77750 0.77716 1.21761 1.22661 1.19660 0.92710 0.90066 0.93657 0.88336 0.89600 0.79933 0.78287 0.92038 0.90717 0.90168 0.87758 0.85696 0.92237 0.94554 0.93008 0.92183 0.90082 0.91385 0.93083 0.86929 0.94486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.90 71.98 0.71 -1.70 16 2 C -0.04 -0.74 6.08 29.85 0.18 -0.56 16 3 C 0.19 4.38 7.16 138.13 0.99 5.37 16 4 N -0.53 -13.51 11.25 -188.14 -2.12 -15.63 16 5 C -0.05 -1.11 11.87 83.52 0.99 -0.12 16 6 C -0.05 -0.85 10.70 83.08 0.89 0.04 16 7 N -0.45 -8.71 2.61 -491.91 -1.28 -10.00 16 8 C 0.15 2.97 2.64 44.99 0.12 3.09 16 9 H 0.10 2.16 6.49 -2.39 -0.02 2.15 16 10 C -0.16 -2.99 8.99 71.98 0.65 -2.34 16 11 C -0.14 -2.63 3.57 29.85 0.11 -2.52 16 12 C 0.51 14.85 7.43 87.66 0.65 15.50 16 13 O -0.58 -20.34 13.43 -3.06 -0.04 -20.38 16 14 N -0.59 -19.41 2.27 -811.61 -1.84 -21.25 16 15 C 0.13 5.49 5.80 86.55 0.50 5.99 16 16 C 0.16 7.14 3.09 45.47 0.14 7.28 16 17 H 0.07 3.87 6.37 -2.39 -0.02 3.85 16 18 C -0.13 -4.41 6.31 32.11 0.20 -4.21 16 19 C -0.11 -3.06 6.23 32.11 0.20 -2.86 16 20 C 0.13 4.11 4.27 45.47 0.19 4.30 16 21 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 22 C 0.10 2.87 5.91 86.30 0.51 3.38 16 23 N -0.61 -26.99 2.80 -636.67 -1.78 -28.78 16 24 C -0.23 -11.64 10.37 84.03 0.87 -10.77 16 25 H 0.08 3.89 7.85 -2.91 -0.02 3.87 16 26 C -0.06 -2.94 5.41 84.86 0.46 -2.48 16 27 N -0.94 -52.28 10.40 21.65 0.23 -52.06 16 28 Si 0.97 43.36 29.56 68.60 2.03 45.39 16 29 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 30 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 31 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.38 7.08 -2.39 -0.02 1.36 16 37 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.07 1.16 7.95 -2.39 -0.02 1.14 16 41 H 0.08 1.91 5.95 -2.39 -0.01 1.90 16 42 H 0.10 1.94 8.06 -2.39 -0.02 1.92 16 43 H 0.13 1.80 7.56 -2.39 -0.02 1.79 16 44 H 0.06 2.57 7.11 -2.38 -0.02 2.55 16 45 H 0.04 1.83 7.79 -2.39 -0.02 1.81 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.06 2.00 7.84 -2.39 -0.02 1.98 16 48 H 0.08 1.80 7.86 -2.38 -0.02 1.79 16 49 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.11 2.18 6.13 -2.39 -0.01 2.16 16 52 H 0.25 13.64 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -66.23 401.11 4.45 -61.78 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.90 Total: 23.50 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 8.37 Total: 17.43 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -6.80 Total: -127.71 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.04 Total: -20.38 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -66.23 4.45 -61.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029314007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.529 kcal (2) G-P(sol) polarization free energy of solvation -66.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.09 seconds