Wall clock time and date at job start Wed Apr 1 2020 04:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47331 * 2 1 4 4 C 1.50698 * 109.46939 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.98776 * 269.99277 * 4 3 2 6 6 N 1.39931 * 108.89739 * 179.97438 * 5 4 3 7 7 H 0.96998 * 125.75672 * 180.02562 * 6 5 4 8 8 C 1.34257 * 108.49303 * 359.75737 * 6 5 4 9 9 C 1.38043 * 107.41798 * 0.39020 * 8 6 5 10 10 C 1.47428 * 126.41943 * 179.87732 * 9 8 6 11 11 O 1.21605 * 120.00175 * 203.31662 * 10 9 8 12 12 N 1.34779 * 119.99705 * 23.30454 * 10 9 8 13 13 C 1.46933 * 120.55354 * 5.01278 * 12 10 9 14 14 C 1.53344 * 108.68659 * 125.62413 * 13 12 10 15 15 C 1.52106 * 109.44098 * 53.30294 * 14 13 12 16 16 C 1.54383 * 110.51300 * 64.08942 * 15 14 13 17 17 C 1.54462 * 102.86842 * 83.32809 * 16 15 14 18 18 N 1.47075 * 107.29769 * 21.51072 * 17 16 15 19 19 C 1.36936 * 125.62853 * 180.96590 * 18 17 16 20 20 H 1.08003 * 120.00076 * 179.25538 * 19 18 17 21 21 C 1.38809 * 120.00099 * 359.25964 * 19 18 17 22 22 N 1.31612 * 120.00056 * 160.31776 * 21 19 18 23 23 Si 1.86803 * 119.99777 * 340.31569 * 21 19 18 24 24 H 1.48495 * 109.47007 * 186.13364 * 23 21 19 25 25 H 1.48504 * 109.47292 * 306.13304 * 23 21 19 26 26 H 1.48500 * 109.46936 * 66.13333 * 23 21 19 27 27 C 1.47578 * 108.74490 * 1.22817 * 18 17 16 28 28 C 1.52103 * 111.60005 * 300.69216 * 15 14 13 29 29 C 1.46927 * 120.54996 * 184.98283 * 12 10 9 30 30 H 1.09002 * 109.46920 * 60.00164 * 1 2 3 31 31 H 1.08994 * 109.47476 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47249 * 300.00626 * 1 2 3 33 33 H 1.08994 * 109.47249 * 239.99374 * 2 1 3 34 34 H 1.09002 * 109.46920 * 119.99836 * 2 1 3 35 35 H 1.08994 * 109.47465 * 59.99506 * 3 2 1 36 36 H 1.08998 * 109.46863 * 299.99299 * 3 2 1 37 37 H 1.08005 * 126.29502 * 180.24352 * 8 6 5 38 38 H 1.08997 * 109.60070 * 5.86109 * 13 12 10 39 39 H 1.09004 * 109.59831 * 245.38450 * 13 12 10 40 40 H 1.09001 * 109.47265 * 293.31459 * 14 13 12 41 41 H 1.08995 * 109.47548 * 173.29341 * 14 13 12 42 42 H 1.09001 * 110.73804 * 324.98691 * 16 15 14 43 43 H 1.09003 * 110.74097 * 201.67469 * 16 15 14 44 44 H 1.08996 * 109.87792 * 262.07870 * 17 16 15 45 45 H 1.09000 * 109.87416 * 140.93584 * 17 16 15 46 46 H 0.96995 * 120.00659 * 5.00656 * 22 21 19 47 47 H 1.09001 * 110.37673 * 95.26082 * 27 18 17 48 48 H 1.08994 * 110.37904 * 217.61741 * 27 18 17 49 49 H 1.09003 * 109.47595 * 179.30121 * 28 15 14 50 50 H 1.09003 * 109.47793 * 299.30783 * 28 15 14 51 51 H 1.09001 * 109.60176 * 354.13000 * 29 12 10 52 52 H 1.08997 * 109.60455 * 114.61072 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3131 1.4426 1.0565 6 7 5.6508 1.4418 0.6458 7 1 6.4237 1.4415 1.2319 8 6 5.6843 1.4357 -0.6963 9 6 4.3778 1.4416 -1.1423 10 6 3.9327 1.4406 -2.5477 11 8 2.8294 1.8626 -2.8364 12 7 4.7488 0.9721 -3.5127 13 6 6.0388 0.3593 -3.1674 14 6 6.1052 -1.0357 -3.8006 15 6 5.8138 -0.9301 -5.2898 16 6 6.9064 -0.1000 -5.9973 17 6 8.0218 -1.1394 -6.2450 18 7 7.3963 -2.4700 -6.2055 19 6 8.0493 -3.6634 -6.3618 20 1 7.4998 -4.5913 -6.3040 21 6 9.4177 -3.6805 -6.5944 22 7 10.1107 -4.7754 -6.3641 23 14 10.2755 -2.1495 -7.2345 24 1 11.6937 -2.4674 -7.5387 25 1 9.5970 -1.6819 -8.4700 26 1 10.2175 -1.0821 -6.2037 27 6 5.9477 -2.3063 -5.9758 28 6 4.4390 -0.3339 -5.5504 29 6 4.3629 1.0652 -4.9273 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9562 -0.8900 37 1 6.5704 1.4299 -1.3138 38 1 6.1248 0.2738 -2.0842 39 1 6.8511 0.9752 -3.5535 40 1 5.3654 -1.6836 -3.3306 41 1 7.1008 -1.4544 -3.6539 42 1 7.2625 0.7011 -5.3496 43 1 6.5362 0.3010 -6.9409 44 1 8.7796 -1.0627 -5.4654 45 1 8.4744 -0.9715 -7.2223 46 1 9.6561 -5.5910 -6.1016 47 1 5.4098 -2.3146 -6.9238 48 1 5.5759 -3.0941 -5.3206 49 1 4.2716 -0.2627 -6.6252 50 1 3.6757 -0.9720 -5.1052 51 1 3.3440 1.4447 -5.0042 52 1 5.0457 1.7356 -5.4493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035199850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:20 Heat of formation + Delta-G solvation = 75.391470 kcal Electronic energy + Delta-G solvation = -31946.172274 eV Core-core repulsion = 27948.313375 eV Total energy + Delta-G solvation = -3997.858898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.86512 -40.22740 -38.55675 -36.12963 -35.32479 -33.32770 -32.01139 -31.85107 -31.02924 -30.08304 -29.07183 -27.48417 -27.07335 -24.30396 -23.65844 -23.09846 -22.33425 -22.02443 -20.77192 -20.36172 -19.67449 -18.66943 -17.67839 -17.17146 -16.65028 -15.85405 -15.74003 -15.34160 -15.26828 -15.19382 -14.66684 -14.62548 -13.99859 -13.77901 -13.75625 -13.62223 -13.35280 -13.16948 -13.07158 -12.85732 -12.48417 -12.28955 -12.18936 -11.85721 -11.70110 -11.51615 -11.44958 -11.27621 -11.20247 -11.09814 -10.96963 -10.81077 -10.38504 -10.30181 -10.23822 -9.87120 -9.83982 -9.70428 -9.47187 -9.04488 -8.96239 -8.63436 -8.55076 -7.03395 -6.31927 -3.17582 1.23407 1.93542 2.38542 2.95579 3.26962 3.35849 3.47359 3.67712 4.16800 4.30752 4.58944 4.65207 4.71230 4.77731 4.79732 4.89349 4.92236 5.01807 5.07918 5.11972 5.15963 5.19972 5.30834 5.36092 5.42988 5.47913 5.56176 5.61988 5.64318 5.68774 5.71587 5.76194 5.83806 5.86240 5.93292 5.97577 6.06525 6.09751 6.12645 6.23949 6.26148 6.30774 6.39617 6.40818 6.52280 6.64392 6.76804 6.77877 6.78845 7.23612 7.41316 7.66508 8.19143 8.33009 9.05638 9.58630 10.25360 11.19378 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.002824 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.394043 B = 9913.810554 C =10250.452139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.049 4.049 4 C 0.137 3.863 5 N -0.298 5.298 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.093 3.907 9 C -0.281 4.281 10 C 0.595 3.405 11 O -0.545 6.545 12 N -0.604 5.604 13 C 0.084 3.916 14 C -0.112 4.112 15 C -0.071 4.071 16 C -0.121 4.121 17 C 0.104 3.896 18 N -0.612 5.612 19 C -0.322 4.322 20 H 0.077 0.923 21 C -0.027 4.027 22 N -0.929 5.929 23 Si 1.073 2.927 24 H -0.303 1.303 25 H -0.300 1.300 26 H -0.283 1.283 27 C 0.148 3.852 28 C -0.116 4.116 29 C 0.117 3.883 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.198 0.802 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.029 0.971 46 H 0.260 0.740 47 H 0.022 0.978 48 H 0.043 0.957 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.091 0.909 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.473 15.511 12.346 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.088 4.088 4 C -0.031 4.031 5 N -0.120 5.120 6 N -0.167 5.167 7 H 0.289 0.711 8 C -0.059 4.059 9 C -0.296 4.296 10 C 0.385 3.615 11 O -0.423 6.423 12 N -0.336 5.336 13 C -0.038 4.038 14 C -0.150 4.150 15 C -0.072 4.072 16 C -0.159 4.159 17 C -0.021 4.021 18 N -0.339 5.339 19 C -0.449 4.449 20 H 0.095 0.905 21 C -0.226 4.226 22 N -0.571 5.571 23 Si 0.908 3.092 24 H -0.232 1.232 25 H -0.229 1.229 26 H -0.210 1.210 27 C 0.022 3.978 28 C -0.155 4.155 29 C -0.006 4.006 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.214 0.786 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.040 0.960 48 H 0.061 0.939 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.110 0.890 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.494 16.264 13.064 23.818 hybrid contribution -0.742 -0.859 -0.439 1.216 sum -12.236 15.405 12.626 23.376 Atomic orbital electron populations 1.21740 0.95224 1.01766 1.01977 1.21400 0.96091 0.95421 1.02248 1.20273 0.85407 0.98598 1.04536 1.22424 0.97006 0.95069 0.88610 1.77151 0.86288 1.26056 1.22495 1.46174 1.07836 1.57112 1.05537 0.71095 1.23713 0.99482 0.97151 0.85528 1.20256 0.92114 1.22579 0.94701 1.17256 0.83890 0.76942 0.83457 1.90713 1.20392 1.48535 1.82690 1.47906 1.19685 1.59501 1.06557 1.22518 0.84966 0.95077 1.01244 1.21633 1.03519 0.95271 0.94544 1.21089 0.94009 0.97121 0.94973 1.22640 0.96089 0.97341 0.99810 1.22084 0.95470 0.85962 0.98563 1.44861 1.02071 1.01311 1.85698 1.20121 0.92858 0.83464 1.48502 0.90498 1.25730 0.92658 1.04492 0.99700 1.70915 1.36209 1.02084 1.47914 0.83842 0.74599 0.74534 0.76267 1.23172 1.22895 1.20999 1.21522 0.86657 0.93301 0.96305 1.21730 0.96997 0.95785 1.00981 1.21631 1.01921 0.97358 0.79644 0.92291 0.92626 0.92746 0.91758 0.92082 0.90439 0.87786 0.78566 0.88763 0.90832 0.91733 0.89507 0.91443 0.91545 0.93384 0.95388 0.92935 0.96019 0.93899 0.90566 0.91544 0.89023 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.11 -1.12 5.92 -26.73 -0.16 -1.28 16 3 C -0.05 -0.52 5.50 -27.88 -0.15 -0.67 16 4 C 0.14 1.61 6.51 -82.02 -0.53 1.08 16 5 N -0.30 -3.35 12.63 33.90 0.43 -2.92 16 6 N -0.46 -3.73 7.29 30.85 0.22 -3.51 16 7 H 0.44 2.01 8.96 -182.73 -1.64 0.37 16 8 C 0.09 0.78 9.70 -16.56 -0.16 0.62 16 9 C -0.28 -3.22 5.75 -105.07 -0.60 -3.83 16 10 C 0.60 7.73 7.61 -12.52 -0.10 7.63 16 11 O -0.54 -8.41 14.55 5.27 0.08 -8.34 16 12 N -0.60 -6.98 2.96 -173.84 -0.51 -7.50 16 13 C 0.08 0.87 4.94 -3.63 -0.02 0.85 16 14 C -0.11 -1.50 4.87 -27.01 -0.13 -1.63 16 15 C -0.07 -1.03 0.55 -153.99 -0.08 -1.11 16 16 C -0.12 -1.82 4.91 -25.24 -0.12 -1.94 16 17 C 0.10 2.12 4.23 -2.96 -0.01 2.11 16 18 N -0.61 -14.35 3.36 -170.17 -0.57 -14.92 16 19 C -0.32 -9.05 10.55 -15.06 -0.16 -9.21 16 20 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 21 C -0.03 -0.78 5.49 -17.43 -0.10 -0.87 16 22 N -0.93 -28.96 13.70 55.49 0.76 -28.20 16 23 Si 1.07 26.31 24.53 -169.99 -4.17 22.14 16 24 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 25 H -0.30 -7.16 6.73 56.52 0.38 -6.78 16 26 H -0.28 -6.18 5.23 56.52 0.30 -5.89 16 27 C 0.15 2.83 6.16 -2.74 -0.02 2.81 16 28 C -0.12 -1.43 4.84 -27.01 -0.13 -1.56 16 29 C 0.12 1.33 6.17 -3.63 -0.02 1.31 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.22 6.43 -51.93 -0.33 0.89 16 37 H 0.20 1.06 5.80 -52.48 -0.30 0.76 16 38 H 0.09 0.82 3.59 -51.93 -0.19 0.63 16 39 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.35 7.81 -51.93 -0.41 0.94 16 42 H 0.07 0.86 6.17 -51.93 -0.32 0.53 16 43 H 0.07 0.94 7.98 -51.93 -0.41 0.52 16 44 H 0.05 1.03 6.02 -51.93 -0.31 0.71 16 45 H 0.03 0.62 4.44 -51.93 -0.23 0.39 16 46 H 0.26 8.04 8.73 -40.82 -0.36 7.69 16 47 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 48 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 49 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.10 6.99 -51.93 -0.36 0.74 16 52 H 0.07 0.71 7.62 -51.93 -0.40 0.31 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -34.93 386.13 -9.66 -44.59 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -9.58 Total: -0.58 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.13 Total: -6.58 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.33 Total: -57.05 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.17 Total: 22.14 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.93 -9.66 -44.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035199850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.981 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds