Wall clock time and date at job start Wed Apr 1 2020 04:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47331 * 2 1 4 4 C 1.50698 * 109.46939 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.98776 * 269.99277 * 4 3 2 6 6 N 1.39931 * 108.89739 * 179.97438 * 5 4 3 7 7 H 0.96998 * 125.75672 * 180.02562 * 6 5 4 8 8 C 1.34257 * 108.49303 * 359.75737 * 6 5 4 9 9 C 1.38043 * 107.41798 * 0.39020 * 8 6 5 10 10 C 1.47428 * 126.41943 * 179.87732 * 9 8 6 11 11 O 1.21605 * 120.00175 * 203.31662 * 10 9 8 12 12 N 1.34779 * 119.99705 * 23.30454 * 10 9 8 13 13 C 1.46933 * 120.55354 * 5.01278 * 12 10 9 14 14 C 1.53344 * 108.68659 * 125.62413 * 13 12 10 15 15 C 1.52106 * 109.44098 * 53.30294 * 14 13 12 16 16 C 1.54383 * 110.51300 * 64.08942 * 15 14 13 17 17 C 1.54462 * 102.86842 * 83.32809 * 16 15 14 18 18 N 1.47075 * 107.29769 * 21.51072 * 17 16 15 19 19 C 1.36936 * 125.62853 * 180.96590 * 18 17 16 20 20 H 1.08003 * 120.00076 * 179.25538 * 19 18 17 21 21 C 1.38809 * 120.00099 * 359.25964 * 19 18 17 22 22 N 1.31612 * 120.00056 * 160.31776 * 21 19 18 23 23 Si 1.86803 * 119.99777 * 340.31569 * 21 19 18 24 24 H 1.48495 * 109.47007 * 186.13364 * 23 21 19 25 25 H 1.48504 * 109.47292 * 306.13304 * 23 21 19 26 26 H 1.48500 * 109.46936 * 66.13333 * 23 21 19 27 27 C 1.47578 * 108.74490 * 1.22817 * 18 17 16 28 28 C 1.52103 * 111.60005 * 300.69216 * 15 14 13 29 29 C 1.46927 * 120.54996 * 184.98283 * 12 10 9 30 30 H 1.09002 * 109.46920 * 60.00164 * 1 2 3 31 31 H 1.08994 * 109.47476 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47249 * 300.00626 * 1 2 3 33 33 H 1.08994 * 109.47249 * 239.99374 * 2 1 3 34 34 H 1.09002 * 109.46920 * 119.99836 * 2 1 3 35 35 H 1.08994 * 109.47465 * 59.99506 * 3 2 1 36 36 H 1.08998 * 109.46863 * 299.99299 * 3 2 1 37 37 H 1.08005 * 126.29502 * 180.24352 * 8 6 5 38 38 H 1.08997 * 109.60070 * 5.86109 * 13 12 10 39 39 H 1.09004 * 109.59831 * 245.38450 * 13 12 10 40 40 H 1.09001 * 109.47265 * 293.31459 * 14 13 12 41 41 H 1.08995 * 109.47548 * 173.29341 * 14 13 12 42 42 H 1.09001 * 110.73804 * 324.98691 * 16 15 14 43 43 H 1.09003 * 110.74097 * 201.67469 * 16 15 14 44 44 H 1.08996 * 109.87792 * 262.07870 * 17 16 15 45 45 H 1.09000 * 109.87416 * 140.93584 * 17 16 15 46 46 H 0.96995 * 120.00659 * 5.00656 * 22 21 19 47 47 H 1.09001 * 110.37673 * 95.26082 * 27 18 17 48 48 H 1.08994 * 110.37904 * 217.61741 * 27 18 17 49 49 H 1.09003 * 109.47595 * 179.30121 * 28 15 14 50 50 H 1.09003 * 109.47793 * 299.30783 * 28 15 14 51 51 H 1.09001 * 109.60176 * 354.13000 * 29 12 10 52 52 H 1.08997 * 109.60455 * 114.61072 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3131 1.4426 1.0565 6 7 5.6508 1.4418 0.6458 7 1 6.4237 1.4415 1.2319 8 6 5.6843 1.4357 -0.6963 9 6 4.3778 1.4416 -1.1423 10 6 3.9327 1.4406 -2.5477 11 8 2.8294 1.8626 -2.8364 12 7 4.7488 0.9721 -3.5127 13 6 6.0388 0.3593 -3.1674 14 6 6.1052 -1.0357 -3.8006 15 6 5.8138 -0.9301 -5.2898 16 6 6.9064 -0.1000 -5.9973 17 6 8.0218 -1.1394 -6.2450 18 7 7.3963 -2.4700 -6.2055 19 6 8.0493 -3.6634 -6.3618 20 1 7.4998 -4.5913 -6.3040 21 6 9.4177 -3.6805 -6.5944 22 7 10.1107 -4.7754 -6.3641 23 14 10.2755 -2.1495 -7.2345 24 1 11.6937 -2.4674 -7.5387 25 1 9.5970 -1.6819 -8.4700 26 1 10.2175 -1.0821 -6.2037 27 6 5.9477 -2.3063 -5.9758 28 6 4.4390 -0.3339 -5.5504 29 6 4.3629 1.0652 -4.9273 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9562 -0.8900 37 1 6.5704 1.4299 -1.3138 38 1 6.1248 0.2738 -2.0842 39 1 6.8511 0.9752 -3.5535 40 1 5.3654 -1.6836 -3.3306 41 1 7.1008 -1.4544 -3.6539 42 1 7.2625 0.7011 -5.3496 43 1 6.5362 0.3010 -6.9409 44 1 8.7796 -1.0627 -5.4654 45 1 8.4744 -0.9715 -7.2223 46 1 9.6561 -5.5910 -6.1016 47 1 5.4098 -2.3146 -6.9238 48 1 5.5759 -3.0941 -5.3206 49 1 4.2716 -0.2627 -6.6252 50 1 3.6757 -0.9720 -5.1052 51 1 3.3440 1.4447 -5.0042 52 1 5.0457 1.7356 -5.4493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035199850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:14 Heat of formation + Delta-G solvation = 51.406990 kcal Electronic energy + Delta-G solvation = -31947.212319 eV Core-core repulsion = 27948.313375 eV Total energy + Delta-G solvation = -3998.898944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 6.60 seconds Orbital eigenvalues (eV) -42.64263 -41.30082 -39.70688 -37.35858 -36.16360 -34.93614 -33.37912 -32.59015 -32.37194 -30.95901 -30.59484 -28.66775 -28.00875 -25.67683 -24.78709 -24.34783 -23.26878 -22.88959 -22.09554 -21.57030 -20.50620 -19.96004 -19.18055 -18.27420 -17.69279 -16.94429 -16.74720 -16.70340 -16.47158 -16.06571 -15.58524 -15.42743 -15.38820 -15.09602 -14.92386 -14.90967 -14.56795 -14.29899 -14.12313 -13.94740 -13.79014 -13.53569 -13.11663 -12.97522 -12.90919 -12.79234 -12.56460 -12.46097 -12.21577 -12.17635 -11.95229 -11.77207 -11.64708 -11.59612 -11.54142 -11.46119 -11.18860 -10.82010 -10.78497 -10.59612 -10.48696 -9.86026 -9.48130 -9.04644 -8.62422 -5.38935 0.52605 1.08723 1.41184 1.54342 1.74606 1.74903 2.09470 2.39102 2.57313 3.13436 3.37581 3.40594 3.58894 3.65724 3.74464 3.78012 3.96545 4.06983 4.13928 4.16075 4.18471 4.29654 4.32958 4.37061 4.41972 4.47485 4.55843 4.58094 4.64069 4.73885 4.78057 4.81919 4.85877 4.87838 4.92205 4.94628 4.98501 5.08268 5.10782 5.11995 5.14114 5.29055 5.29989 5.39220 5.43119 5.44840 5.45786 5.56912 5.67516 6.12421 6.24274 6.42844 6.57488 6.88108 7.27271 7.51089 8.16055 8.90379 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.002824 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.394043 B = 9913.810554 C =10250.452139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.047 4.047 4 C 0.123 3.877 5 N -0.320 5.320 6 N -0.448 5.448 7 H 0.460 0.540 8 C 0.117 3.883 9 C -0.313 4.313 10 C 0.594 3.406 11 O -0.578 6.578 12 N -0.602 5.602 13 C 0.091 3.909 14 C -0.109 4.109 15 C -0.057 4.057 16 C -0.108 4.108 17 C 0.093 3.907 18 N -0.631 5.631 19 C -0.311 4.311 20 H 0.039 0.961 21 C -0.086 4.086 22 N -0.966 5.966 23 Si 1.111 2.889 24 H -0.318 1.318 25 H -0.290 1.290 26 H -0.233 1.233 27 C 0.141 3.859 28 C -0.108 4.108 29 C 0.120 3.880 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.023 0.977 46 H 0.244 0.756 47 H 0.022 0.978 48 H 0.024 0.976 49 H 0.087 0.913 50 H 0.055 0.945 51 H 0.084 0.916 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.093 19.152 13.053 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.086 4.086 4 C -0.045 4.045 5 N -0.143 5.143 6 N -0.154 5.154 7 H 0.309 0.691 8 C -0.037 4.037 9 C -0.328 4.328 10 C 0.384 3.616 11 O -0.459 6.459 12 N -0.333 5.333 13 C -0.031 4.031 14 C -0.147 4.147 15 C -0.058 4.058 16 C -0.146 4.146 17 C -0.031 4.031 18 N -0.358 5.358 19 C -0.440 4.440 20 H 0.057 0.943 21 C -0.278 4.278 22 N -0.611 5.611 23 Si 0.938 3.062 24 H -0.248 1.248 25 H -0.218 1.218 26 H -0.158 1.158 27 C 0.016 3.984 28 C -0.147 4.147 29 C -0.002 4.002 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.053 0.947 47 H 0.040 0.960 48 H 0.042 0.958 49 H 0.105 0.895 50 H 0.074 0.926 51 H 0.103 0.897 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.151 19.929 13.813 26.689 hybrid contribution -0.946 -2.139 -0.638 2.424 sum -12.097 17.790 13.175 25.227 Atomic orbital electron populations 1.21723 0.94042 1.02260 1.02387 1.21333 0.97113 0.94947 1.01187 1.20222 0.85487 0.98690 1.04176 1.22584 0.97470 0.95368 0.89087 1.77096 0.87609 1.26857 1.22753 1.46219 1.07502 1.55693 1.05962 0.69112 1.24130 0.99397 0.94512 0.85636 1.20284 0.93493 1.25097 0.93926 1.17472 0.83481 0.76462 0.84148 1.90695 1.21797 1.50132 1.83239 1.47935 1.19896 1.59060 1.06455 1.22602 0.85077 0.93126 1.02266 1.21566 1.01904 0.97306 0.93966 1.20984 0.95577 0.94056 0.95214 1.22674 0.93791 0.96515 1.01585 1.22272 0.97392 0.85531 0.97890 1.44916 1.04025 1.01271 1.85612 1.19998 0.93023 0.84456 1.46484 0.94327 1.27121 0.93970 1.06646 1.00047 1.71037 1.36652 1.02455 1.50959 0.83454 0.72602 0.72820 0.77310 1.24766 1.21761 1.15758 1.21718 0.84290 0.95944 0.96457 1.21653 0.94955 0.96225 1.01819 1.21640 1.02340 0.96606 0.79629 0.92726 0.92091 0.91474 0.93680 0.92109 0.89514 0.89271 0.75043 0.86998 0.88019 0.92993 0.91451 0.87682 0.89702 0.93802 0.95982 0.94693 0.95969 0.95774 0.89457 0.92599 0.89735 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 3 C -0.05 -0.97 5.50 29.85 0.16 -0.81 16 4 C 0.12 2.74 6.51 43.52 0.28 3.02 16 5 N -0.32 -6.64 12.63 -46.67 -0.59 -7.23 16 6 N -0.45 -5.83 7.29 -56.32 -0.41 -6.24 16 7 H 0.46 2.56 8.96 -213.43 -1.91 0.65 16 8 C 0.12 1.51 9.70 84.28 0.82 2.33 16 9 C -0.31 -6.48 5.75 -20.15 -0.12 -6.59 16 10 C 0.59 14.21 7.61 86.66 0.66 14.87 16 11 O -0.58 -17.37 14.55 -4.05 -0.06 -17.43 16 12 N -0.60 -11.87 2.96 -822.17 -2.43 -14.30 16 13 C 0.09 1.47 4.94 86.41 0.43 1.90 16 14 C -0.11 -2.66 4.87 30.41 0.15 -2.51 16 15 C -0.06 -1.51 0.55 -51.84 -0.03 -1.54 16 16 C -0.11 -2.73 4.91 31.56 0.16 -2.57 16 17 C 0.09 3.50 4.23 86.77 0.37 3.87 16 18 N -0.63 -29.27 3.36 -692.30 -2.33 -31.60 16 19 C -0.31 -17.97 10.55 84.03 0.89 -17.08 16 20 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 21 C -0.09 -5.09 5.49 84.86 0.47 -4.62 16 22 N -0.97 -62.37 13.70 21.65 0.30 -62.08 16 23 Si 1.11 52.14 24.53 68.60 1.68 53.82 16 24 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 25 H -0.29 -12.97 6.73 99.48 0.67 -12.30 16 26 H -0.23 -9.10 5.23 99.48 0.52 -8.58 16 27 C 0.14 5.31 6.16 86.63 0.53 5.85 16 28 C -0.11 -2.35 4.84 30.41 0.15 -2.20 16 29 C 0.12 2.30 6.17 86.41 0.53 2.83 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 2.13 6.43 -2.39 -0.02 2.12 16 37 H 0.23 1.18 5.80 -2.91 -0.02 1.16 16 38 H 0.11 1.43 3.59 -2.39 -0.01 1.42 16 39 H 0.10 1.18 6.55 -2.38 -0.02 1.16 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.94 7.81 -2.39 -0.02 1.92 16 42 H 0.10 1.93 6.17 -2.39 -0.01 1.91 16 43 H 0.08 1.90 7.98 -2.39 -0.02 1.88 16 44 H 0.04 1.70 6.02 -2.39 -0.01 1.68 16 45 H 0.02 0.90 4.44 -2.39 -0.01 0.89 16 46 H 0.24 15.92 8.73 -92.71 -0.81 15.11 16 47 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 48 H 0.02 0.97 8.03 -2.39 -0.02 0.96 16 49 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 50 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.08 1.82 6.99 -2.39 -0.02 1.80 16 52 H 0.09 1.39 7.62 -2.39 -0.02 1.37 16 Total: -1.00 -80.85 386.13 1.27 -79.59 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -1.23 Total: 12.34 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 6.34 Total: -6.86 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -5.46 Total: -121.45 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.06 Total: -17.43 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 1.68 Total: 53.82 kcal Total: -80.85 1.27 -79.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035199850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.992 kcal (2) G-P(sol) polarization free energy of solvation -80.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.60 seconds