Wall clock time and date at job start Wed Apr 1 2020 04:44:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.47331 * 2 1
4 4 C 1.50698 * 109.46939 * 179.97438 * 3 2 1
5 5 N 1.30448 * 125.98776 * 269.99277 * 4 3 2
6 6 N 1.39931 * 108.89739 * 179.97438 * 5 4 3
7 7 H 0.96998 * 125.75672 * 180.02562 * 6 5 4
8 8 C 1.34257 * 108.49303 * 359.75737 * 6 5 4
9 9 C 1.38043 * 107.41798 * 0.39020 * 8 6 5
10 10 C 1.47428 * 126.41943 * 179.87732 * 9 8 6
11 11 O 1.21605 * 120.00175 * 203.31662 * 10 9 8
12 12 N 1.34779 * 119.99705 * 23.30454 * 10 9 8
13 13 C 1.46933 * 120.55354 * 5.01278 * 12 10 9
14 14 C 1.53344 * 108.68659 * 125.62413 * 13 12 10
15 15 C 1.52106 * 109.44098 * 53.30294 * 14 13 12
16 16 C 1.54383 * 110.51300 * 64.08942 * 15 14 13
17 17 C 1.54462 * 102.86842 * 83.32809 * 16 15 14
18 18 N 1.47075 * 107.29769 * 21.51072 * 17 16 15
19 19 C 1.36936 * 125.62853 * 180.96590 * 18 17 16
20 20 H 1.08003 * 120.00076 * 179.25538 * 19 18 17
21 21 C 1.38809 * 120.00099 * 359.25964 * 19 18 17
22 22 N 1.31612 * 120.00056 * 160.31776 * 21 19 18
23 23 Si 1.86803 * 119.99777 * 340.31569 * 21 19 18
24 24 H 1.48495 * 109.47007 * 186.13364 * 23 21 19
25 25 H 1.48504 * 109.47292 * 306.13304 * 23 21 19
26 26 H 1.48500 * 109.46936 * 66.13333 * 23 21 19
27 27 C 1.47578 * 108.74490 * 1.22817 * 18 17 16
28 28 C 1.52103 * 111.60005 * 300.69216 * 15 14 13
29 29 C 1.46927 * 120.54996 * 184.98283 * 12 10 9
30 30 H 1.09002 * 109.46920 * 60.00164 * 1 2 3
31 31 H 1.08994 * 109.47476 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.47249 * 300.00626 * 1 2 3
33 33 H 1.08994 * 109.47249 * 239.99374 * 2 1 3
34 34 H 1.09002 * 109.46920 * 119.99836 * 2 1 3
35 35 H 1.08994 * 109.47465 * 59.99506 * 3 2 1
36 36 H 1.08998 * 109.46863 * 299.99299 * 3 2 1
37 37 H 1.08005 * 126.29502 * 180.24352 * 8 6 5
38 38 H 1.08997 * 109.60070 * 5.86109 * 13 12 10
39 39 H 1.09004 * 109.59831 * 245.38450 * 13 12 10
40 40 H 1.09001 * 109.47265 * 293.31459 * 14 13 12
41 41 H 1.08995 * 109.47548 * 173.29341 * 14 13 12
42 42 H 1.09001 * 110.73804 * 324.98691 * 16 15 14
43 43 H 1.09003 * 110.74097 * 201.67469 * 16 15 14
44 44 H 1.08996 * 109.87792 * 262.07870 * 17 16 15
45 45 H 1.09000 * 109.87416 * 140.93584 * 17 16 15
46 46 H 0.96995 * 120.00659 * 5.00656 * 22 21 19
47 47 H 1.09001 * 110.37673 * 95.26082 * 27 18 17
48 48 H 1.08994 * 110.37904 * 217.61741 * 27 18 17
49 49 H 1.09003 * 109.47595 * 179.30121 * 28 15 14
50 50 H 1.09003 * 109.47793 * 299.30783 * 28 15 14
51 51 H 1.09001 * 109.60176 * 354.13000 * 29 12 10
52 52 H 1.08997 * 109.60455 * 114.61072 * 29 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5470 1.4424 0.0006
5 7 4.3131 1.4426 1.0565
6 7 5.6508 1.4418 0.6458
7 1 6.4237 1.4415 1.2319
8 6 5.6843 1.4357 -0.6963
9 6 4.3778 1.4416 -1.1423
10 6 3.9327 1.4406 -2.5477
11 8 2.8294 1.8626 -2.8364
12 7 4.7488 0.9721 -3.5127
13 6 6.0388 0.3593 -3.1674
14 6 6.1052 -1.0357 -3.8006
15 6 5.8138 -0.9301 -5.2898
16 6 6.9064 -0.1000 -5.9973
17 6 8.0218 -1.1394 -6.2450
18 7 7.3963 -2.4700 -6.2055
19 6 8.0493 -3.6634 -6.3618
20 1 7.4998 -4.5913 -6.3040
21 6 9.4177 -3.6805 -6.5944
22 7 10.1107 -4.7754 -6.3641
23 14 10.2755 -2.1495 -7.2345
24 1 11.6937 -2.4674 -7.5387
25 1 9.5970 -1.6819 -8.4700
26 1 10.2175 -1.0821 -6.2037
27 6 5.9477 -2.3063 -5.9758
28 6 4.4390 -0.3339 -5.5504
29 6 4.3629 1.0652 -4.9273
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5139 0.8899
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 1.6767 1.9564 0.8899
36 1 1.6768 1.9562 -0.8900
37 1 6.5704 1.4299 -1.3138
38 1 6.1248 0.2738 -2.0842
39 1 6.8511 0.9752 -3.5535
40 1 5.3654 -1.6836 -3.3306
41 1 7.1008 -1.4544 -3.6539
42 1 7.2625 0.7011 -5.3496
43 1 6.5362 0.3010 -6.9409
44 1 8.7796 -1.0627 -5.4654
45 1 8.4744 -0.9715 -7.2223
46 1 9.6561 -5.5910 -6.1016
47 1 5.4098 -2.3146 -6.9238
48 1 5.5759 -3.0941 -5.3206
49 1 4.2716 -0.2627 -6.6252
50 1 3.6757 -0.9720 -5.1052
51 1 3.3440 1.4447 -5.0042
52 1 5.0457 1.7356 -5.4493
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035199850.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:44:14
Heat of formation + Delta-G solvation = 51.406990 kcal
Electronic energy + Delta-G solvation = -31947.212319 eV
Core-core repulsion = 27948.313375 eV
Total energy + Delta-G solvation = -3998.898944 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 6.60 seconds
Orbital eigenvalues (eV)
-42.64263 -41.30082 -39.70688 -37.35858 -36.16360 -34.93614 -33.37912 -32.59015
-32.37194 -30.95901 -30.59484 -28.66775 -28.00875 -25.67683 -24.78709 -24.34783
-23.26878 -22.88959 -22.09554 -21.57030 -20.50620 -19.96004 -19.18055 -18.27420
-17.69279 -16.94429 -16.74720 -16.70340 -16.47158 -16.06571 -15.58524 -15.42743
-15.38820 -15.09602 -14.92386 -14.90967 -14.56795 -14.29899 -14.12313 -13.94740
-13.79014 -13.53569 -13.11663 -12.97522 -12.90919 -12.79234 -12.56460 -12.46097
-12.21577 -12.17635 -11.95229 -11.77207 -11.64708 -11.59612 -11.54142 -11.46119
-11.18860 -10.82010 -10.78497 -10.59612 -10.48696 -9.86026 -9.48130 -9.04644
-8.62422 -5.38935 0.52605 1.08723 1.41184 1.54342 1.74606 1.74903
2.09470 2.39102 2.57313 3.13436 3.37581 3.40594 3.58894 3.65724
3.74464 3.78012 3.96545 4.06983 4.13928 4.16075 4.18471 4.29654
4.32958 4.37061 4.41972 4.47485 4.55843 4.58094 4.64069 4.73885
4.78057 4.81919 4.85877 4.87838 4.92205 4.94628 4.98501 5.08268
5.10782 5.11995 5.14114 5.29055 5.29989 5.39220 5.43119 5.44840
5.45786 5.56912 5.67516 6.12421 6.24274 6.42844 6.57488 6.88108
7.27271 7.51089 8.16055 8.90379
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.016122 B = 0.002824 C = 0.002731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.394043 B = 9913.810554 C =10250.452139
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.107 4.107
3 C -0.047 4.047
4 C 0.123 3.877
5 N -0.320 5.320
6 N -0.448 5.448
7 H 0.460 0.540
8 C 0.117 3.883
9 C -0.313 4.313
10 C 0.594 3.406
11 O -0.578 6.578
12 N -0.602 5.602
13 C 0.091 3.909
14 C -0.109 4.109
15 C -0.057 4.057
16 C -0.108 4.108
17 C 0.093 3.907
18 N -0.631 5.631
19 C -0.311 4.311
20 H 0.039 0.961
21 C -0.086 4.086
22 N -0.966 5.966
23 Si 1.111 2.889
24 H -0.318 1.318
25 H -0.290 1.290
26 H -0.233 1.233
27 C 0.141 3.859
28 C -0.108 4.108
29 C 0.120 3.880
30 H 0.054 0.946
31 H 0.060 0.940
32 H 0.066 0.934
33 H 0.044 0.956
34 H 0.060 0.940
35 H 0.086 0.914
36 H 0.089 0.911
37 H 0.234 0.766
38 H 0.113 0.887
39 H 0.102 0.898
40 H 0.051 0.949
41 H 0.067 0.933
42 H 0.105 0.895
43 H 0.084 0.916
44 H 0.044 0.956
45 H 0.023 0.977
46 H 0.244 0.756
47 H 0.022 0.978
48 H 0.024 0.976
49 H 0.087 0.913
50 H 0.055 0.945
51 H 0.084 0.916
52 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.093 19.152 13.053 26.142
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.146 4.146
3 C -0.086 4.086
4 C -0.045 4.045
5 N -0.143 5.143
6 N -0.154 5.154
7 H 0.309 0.691
8 C -0.037 4.037
9 C -0.328 4.328
10 C 0.384 3.616
11 O -0.459 6.459
12 N -0.333 5.333
13 C -0.031 4.031
14 C -0.147 4.147
15 C -0.058 4.058
16 C -0.146 4.146
17 C -0.031 4.031
18 N -0.358 5.358
19 C -0.440 4.440
20 H 0.057 0.943
21 C -0.278 4.278
22 N -0.611 5.611
23 Si 0.938 3.062
24 H -0.248 1.248
25 H -0.218 1.218
26 H -0.158 1.158
27 C 0.016 3.984
28 C -0.147 4.147
29 C -0.002 4.002
30 H 0.073 0.927
31 H 0.079 0.921
32 H 0.085 0.915
33 H 0.063 0.937
34 H 0.079 0.921
35 H 0.105 0.895
36 H 0.107 0.893
37 H 0.250 0.750
38 H 0.130 0.870
39 H 0.120 0.880
40 H 0.070 0.930
41 H 0.085 0.915
42 H 0.123 0.877
43 H 0.103 0.897
44 H 0.062 0.938
45 H 0.040 0.960
46 H 0.053 0.947
47 H 0.040 0.960
48 H 0.042 0.958
49 H 0.105 0.895
50 H 0.074 0.926
51 H 0.103 0.897
52 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -11.151 19.929 13.813 26.689
hybrid contribution -0.946 -2.139 -0.638 2.424
sum -12.097 17.790 13.175 25.227
Atomic orbital electron populations
1.21723 0.94042 1.02260 1.02387 1.21333 0.97113 0.94947 1.01187
1.20222 0.85487 0.98690 1.04176 1.22584 0.97470 0.95368 0.89087
1.77096 0.87609 1.26857 1.22753 1.46219 1.07502 1.55693 1.05962
0.69112 1.24130 0.99397 0.94512 0.85636 1.20284 0.93493 1.25097
0.93926 1.17472 0.83481 0.76462 0.84148 1.90695 1.21797 1.50132
1.83239 1.47935 1.19896 1.59060 1.06455 1.22602 0.85077 0.93126
1.02266 1.21566 1.01904 0.97306 0.93966 1.20984 0.95577 0.94056
0.95214 1.22674 0.93791 0.96515 1.01585 1.22272 0.97392 0.85531
0.97890 1.44916 1.04025 1.01271 1.85612 1.19998 0.93023 0.84456
1.46484 0.94327 1.27121 0.93970 1.06646 1.00047 1.71037 1.36652
1.02455 1.50959 0.83454 0.72602 0.72820 0.77310 1.24766 1.21761
1.15758 1.21718 0.84290 0.95944 0.96457 1.21653 0.94955 0.96225
1.01819 1.21640 1.02340 0.96606 0.79629 0.92726 0.92091 0.91474
0.93680 0.92109 0.89514 0.89271 0.75043 0.86998 0.88019 0.92993
0.91451 0.87682 0.89702 0.93802 0.95982 0.94693 0.95969 0.95774
0.89457 0.92599 0.89735 0.89074
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.37 9.91 71.98 0.71 -1.66 16
2 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16
3 C -0.05 -0.97 5.50 29.85 0.16 -0.81 16
4 C 0.12 2.74 6.51 43.52 0.28 3.02 16
5 N -0.32 -6.64 12.63 -46.67 -0.59 -7.23 16
6 N -0.45 -5.83 7.29 -56.32 -0.41 -6.24 16
7 H 0.46 2.56 8.96 -213.43 -1.91 0.65 16
8 C 0.12 1.51 9.70 84.28 0.82 2.33 16
9 C -0.31 -6.48 5.75 -20.15 -0.12 -6.59 16
10 C 0.59 14.21 7.61 86.66 0.66 14.87 16
11 O -0.58 -17.37 14.55 -4.05 -0.06 -17.43 16
12 N -0.60 -11.87 2.96 -822.17 -2.43 -14.30 16
13 C 0.09 1.47 4.94 86.41 0.43 1.90 16
14 C -0.11 -2.66 4.87 30.41 0.15 -2.51 16
15 C -0.06 -1.51 0.55 -51.84 -0.03 -1.54 16
16 C -0.11 -2.73 4.91 31.56 0.16 -2.57 16
17 C 0.09 3.50 4.23 86.77 0.37 3.87 16
18 N -0.63 -29.27 3.36 -692.30 -2.33 -31.60 16
19 C -0.31 -17.97 10.55 84.03 0.89 -17.08 16
20 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16
21 C -0.09 -5.09 5.49 84.86 0.47 -4.62 16
22 N -0.97 -62.37 13.70 21.65 0.30 -62.08 16
23 Si 1.11 52.14 24.53 68.60 1.68 53.82 16
24 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16
25 H -0.29 -12.97 6.73 99.48 0.67 -12.30 16
26 H -0.23 -9.10 5.23 99.48 0.52 -8.58 16
27 C 0.14 5.31 6.16 86.63 0.53 5.85 16
28 C -0.11 -2.35 4.84 30.41 0.15 -2.20 16
29 C 0.12 2.30 6.17 86.41 0.53 2.83 16
30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
31 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16
32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
36 H 0.09 2.13 6.43 -2.39 -0.02 2.12 16
37 H 0.23 1.18 5.80 -2.91 -0.02 1.16 16
38 H 0.11 1.43 3.59 -2.39 -0.01 1.42 16
39 H 0.10 1.18 6.55 -2.38 -0.02 1.16 16
40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
41 H 0.07 1.94 7.81 -2.39 -0.02 1.92 16
42 H 0.10 1.93 6.17 -2.39 -0.01 1.91 16
43 H 0.08 1.90 7.98 -2.39 -0.02 1.88 16
44 H 0.04 1.70 6.02 -2.39 -0.01 1.68 16
45 H 0.02 0.90 4.44 -2.39 -0.01 0.89 16
46 H 0.24 15.92 8.73 -92.71 -0.81 15.11 16
47 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16
48 H 0.02 0.97 8.03 -2.39 -0.02 0.96 16
49 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16
50 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16
51 H 0.08 1.82 6.99 -2.39 -0.02 1.80 16
52 H 0.09 1.39 7.62 -2.39 -0.02 1.37 16
Total: -1.00 -80.85 386.13 1.27 -79.59
By element:
Atomic # 1 Polarization: 13.57 SS G_CDS: -1.23 Total: 12.34 kcal
Atomic # 6 Polarization: -13.20 SS G_CDS: 6.34 Total: -6.86 kcal
Atomic # 7 Polarization: -115.99 SS G_CDS: -5.46 Total: -121.45 kcal
Atomic # 8 Polarization: -17.37 SS G_CDS: -0.06 Total: -17.43 kcal
Atomic # 14 Polarization: 52.14 SS G_CDS: 1.68 Total: 53.82 kcal
Total: -80.85 1.27 -79.59 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035199850.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 130.992 kcal
(2) G-P(sol) polarization free energy of solvation -80.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.139 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.585 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.60 seconds