Wall clock time and date at job start Wed Apr 1 2020 04:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 C 1.50695 * 109.47119 * 120.00094 * 2 1 3 5 5 C 1.35371 * 126.38342 * 324.69280 * 4 2 1 6 6 C 1.41504 * 105.50245 * 179.86991 * 5 4 2 7 7 C 1.47711 * 126.52193 * 180.12985 * 6 5 4 8 8 O 1.21568 * 119.99507 * 7.08195 * 7 6 5 9 9 N 1.34773 * 120.00271 * 187.08314 * 7 6 5 10 10 C 1.46880 * 120.46732 * 186.87598 * 9 7 6 11 11 C 1.52857 * 109.01871 * 235.49059 * 10 9 7 12 12 C 1.52676 * 109.17615 * 307.81519 * 11 10 9 13 13 C 1.53479 * 113.62333 * 188.98976 * 12 11 10 14 14 N 1.47671 * 85.98876 * 137.71298 * 13 12 11 15 15 C 1.36932 * 134.45923 * 155.70297 * 14 13 12 16 16 H 1.08001 * 120.00084 * 179.97438 * 15 14 13 17 17 C 1.38809 * 119.99983 * 359.96871 * 15 14 13 18 18 N 1.31618 * 120.00071 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00039 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46614 * 60.00401 * 19 17 15 21 21 H 1.48498 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46932 * 300.00425 * 19 17 15 23 23 C 1.47674 * 91.08418 * 335.68061 * 14 13 12 24 24 C 1.52672 * 113.18189 * 57.45945 * 12 11 10 25 25 C 1.46889 * 120.46339 * 7.15577 * 9 7 6 26 26 N 1.31820 * 106.96094 * 0.39528 * 6 5 4 27 27 N 1.28466 * 110.07183 * 359.74932 * 26 6 5 28 28 C 1.46499 * 124.88092 * 180.02562 * 27 26 6 29 29 H 1.09009 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46931 * 60.00293 * 1 2 3 31 31 H 1.08998 * 109.47368 * 299.99738 * 1 2 3 32 32 H 1.09002 * 109.46945 * 240.00029 * 2 1 3 33 33 H 1.08998 * 109.46933 * 59.99995 * 3 2 1 34 34 H 1.08996 * 109.46649 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47081 * 299.99896 * 3 2 1 36 36 H 1.07997 * 127.24924 * 359.95493 * 5 4 2 37 37 H 1.09000 * 109.58756 * 355.31522 * 10 9 7 38 38 H 1.09005 * 109.58470 * 115.74836 * 10 9 7 39 39 H 1.08999 * 109.60723 * 187.84211 * 11 10 9 40 40 H 1.08998 * 109.44777 * 67.69806 * 11 10 9 41 41 H 1.09001 * 113.79329 * 251.98187 * 13 12 11 42 42 H 1.09003 * 113.78708 * 23.44450 * 13 12 11 43 43 H 0.96998 * 120.00267 * 179.97438 * 18 17 15 44 44 H 1.08994 * 113.79416 * 270.04726 * 23 14 13 45 45 H 1.08996 * 113.78819 * 138.57973 * 23 14 13 46 46 H 1.09001 * 109.53024 * 182.51848 * 24 12 11 47 47 H 1.09004 * 109.59085 * 62.33583 * 24 12 11 48 48 H 1.09001 * 109.58195 * 244.25299 * 25 9 7 49 49 H 1.08994 * 109.58874 * 4.68381 * 25 9 7 50 50 H 1.08998 * 109.47188 * 269.96429 * 28 27 26 51 51 H 1.08995 * 109.47101 * 29.96392 * 28 27 26 52 52 H 1.09000 * 109.47078 * 149.96735 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4615 -0.6917 2.4577 6 6 2.2886 -1.5013 3.2719 7 6 2.0890 -1.8010 4.7045 8 8 1.0717 -1.4416 5.2646 9 7 3.0347 -2.4729 5.3905 10 6 2.7854 -2.9080 6.7711 11 6 3.8881 -2.3558 7.6742 12 6 5.2485 -2.7254 7.0879 13 6 6.4260 -2.4131 8.0215 14 7 6.9661 -3.7242 7.6090 15 6 8.2196 -4.2733 7.5623 16 1 8.3530 -5.2853 7.2096 17 6 9.3189 -3.5292 7.9682 18 7 9.1563 -2.2960 8.3985 19 14 11.0289 -4.2786 7.9052 20 1 11.3506 -4.6603 6.5066 21 1 12.0222 -3.2865 8.3891 22 1 11.0728 -5.4848 8.7702 23 6 5.6125 -4.2059 7.2677 24 6 5.4468 -2.2168 5.6621 25 6 4.3314 -2.7749 4.7702 26 7 3.2742 -1.9325 2.5102 27 7 3.1389 -1.4796 1.3157 28 6 4.0533 -1.7580 0.2055 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 0.5632 -0.1700 2.7530 37 1 1.8189 -2.5300 7.1044 38 1 2.7901 -3.9970 6.8174 39 1 3.7927 -2.7844 8.6718 40 1 3.7994 -1.2711 7.7335 41 1 7.0314 -1.5665 7.6977 42 1 6.1504 -2.3628 9.0749 43 1 9.9244 -1.7761 8.6825 44 1 5.0953 -4.6883 8.0970 45 1 5.5714 -4.7840 6.3446 46 1 6.4144 -2.5505 5.2874 47 1 5.4089 -1.1274 5.6541 48 1 4.4472 -3.8544 4.6727 49 1 4.3830 -2.3094 3.7860 50 1 4.8358 -0.9996 0.1804 51 1 4.5041 -2.7407 0.3438 52 1 3.5004 -1.7408 -0.7337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035704362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:50 Heat of formation + Delta-G solvation = 105.000660 kcal Electronic energy + Delta-G solvation = -31423.293386 eV Core-core repulsion = 27426.718438 eV Total energy + Delta-G solvation = -3996.574948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.91718 -40.01127 -38.45289 -36.16825 -35.56064 -33.72159 -32.42857 -31.10211 -30.21532 -29.77792 -27.78596 -27.58038 -26.66551 -24.97060 -24.10757 -23.34705 -22.75130 -22.22523 -20.94052 -20.21264 -19.24218 -17.58854 -17.09077 -16.64274 -16.51274 -16.32844 -15.62608 -15.00703 -14.82357 -14.77279 -14.54539 -14.27927 -14.06537 -13.76448 -13.58644 -13.51203 -13.39924 -13.22698 -12.89389 -12.71243 -12.59582 -12.46615 -12.10467 -12.02002 -11.93330 -11.64042 -11.54903 -11.28511 -11.12212 -11.00191 -10.79310 -10.76538 -10.68522 -10.30980 -10.05830 -9.66287 -9.61595 -9.41944 -9.26344 -9.20433 -9.04866 -8.71985 -8.26038 -6.78966 -5.70243 -3.01643 1.52270 1.98937 2.24825 3.21206 3.41661 3.45829 3.47150 3.50831 4.06379 4.17593 4.39399 4.50762 4.61427 4.68465 4.77166 4.89859 5.07164 5.09726 5.15982 5.23030 5.26703 5.34154 5.35480 5.37288 5.44139 5.48226 5.54027 5.59858 5.62355 5.67210 5.74890 5.81385 5.87457 5.94513 6.02677 6.05680 6.13601 6.31938 6.32915 6.41157 6.45452 6.56867 6.69651 6.74110 6.83171 6.92875 6.99028 7.31952 7.47063 7.59198 7.65639 7.83663 8.05500 8.34913 9.11433 9.77494 10.69509 11.46698 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002599 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.829121 B =10772.485130 C =11946.204486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.017 3.983 5 C -0.174 4.174 6 C -0.006 4.006 7 C 0.600 3.400 8 O -0.545 6.545 9 N -0.591 5.591 10 C 0.115 3.885 11 C -0.117 4.117 12 C -0.108 4.108 13 C 0.173 3.827 14 N -0.610 5.610 15 C -0.219 4.219 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.127 3.873 24 C -0.094 4.094 25 C 0.087 3.913 26 N -0.256 5.256 27 N -0.284 5.284 28 C 0.083 3.917 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.159 0.841 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.253 0.747 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.122 0.878 50 H 0.086 0.914 51 H 0.099 0.901 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 5.005 -19.852 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.107 4.107 5 C -0.202 4.202 6 C -0.165 4.165 7 C 0.387 3.613 8 O -0.421 6.421 9 N -0.322 5.322 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.110 4.110 13 C 0.048 3.952 14 N -0.335 5.335 15 C -0.347 4.347 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.001 3.999 24 C -0.133 4.133 25 C -0.035 4.035 26 N -0.091 5.091 27 N -0.071 5.071 28 C -0.058 4.058 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.139 0.861 50 H 0.104 0.896 51 H 0.117 0.883 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.576 4.487 -19.585 25.423 hybrid contribution 0.608 -0.102 0.215 0.653 sum -14.968 4.384 -19.370 24.869 Atomic orbital electron populations 1.21829 0.93055 1.02580 1.02632 1.19674 0.96763 0.95461 0.92452 1.21853 1.01167 0.94522 1.02698 1.21348 0.90998 1.00284 0.98084 1.21407 1.03084 1.04694 0.91046 1.21921 0.95591 1.03818 0.95199 1.16996 0.83133 0.77676 0.83523 1.90746 1.28860 1.53420 1.69101 1.47941 1.15200 1.54794 1.14290 1.21555 0.99765 0.99038 0.80313 1.21733 0.94345 1.01114 0.98420 1.22385 0.94326 0.97837 0.96433 1.22229 0.88441 0.90922 0.93607 1.45969 0.99919 1.12447 1.75212 1.18963 0.81651 0.97291 1.36810 0.90538 1.24754 0.97656 0.96468 1.01674 1.69812 1.29162 1.08790 1.49145 0.86247 0.84204 0.77911 0.77677 1.21200 1.21644 1.21313 1.22587 0.87002 0.93439 0.96901 1.21471 0.98422 0.99687 0.93674 1.22570 0.81087 1.01129 0.98759 1.73484 1.22783 1.21519 0.91304 1.45522 1.19147 1.34487 1.07958 1.22177 0.92969 1.04575 0.86049 0.92175 0.91817 0.91671 0.90244 0.91770 0.92629 0.91734 0.82323 0.89434 0.91441 0.90763 0.91861 0.91098 0.95811 0.93721 0.95167 0.94208 0.89686 0.92479 0.91727 0.86059 0.89565 0.88274 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.79 37.16 0.33 -0.47 16 2 C -0.02 -0.14 3.10 -91.77 -0.28 -0.43 16 3 C -0.14 -0.82 9.18 37.16 0.34 -0.47 16 4 C 0.02 0.17 5.84 -82.21 -0.48 -0.31 16 5 C -0.17 -2.13 9.97 -39.36 -0.39 -2.52 16 6 C -0.01 -0.09 6.83 -82.76 -0.57 -0.65 16 7 C 0.60 9.98 7.68 -12.39 -0.10 9.89 16 8 O -0.54 -10.18 16.34 5.31 0.09 -10.09 16 9 N -0.59 -9.39 2.95 -174.12 -0.51 -9.91 16 10 C 0.12 1.75 6.29 -3.91 -0.02 1.72 16 11 C -0.12 -1.90 5.24 -26.97 -0.14 -2.04 16 12 C -0.11 -2.06 0.77 -154.42 -0.12 -2.18 16 13 C 0.17 4.15 6.64 -3.16 -0.02 4.13 16 14 N -0.61 -15.74 3.53 -179.76 -0.64 -16.38 16 15 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.92 -27.66 11.39 55.49 0.63 -27.03 16 19 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.13 2.62 7.73 -3.14 -0.02 2.60 16 24 C -0.09 -1.69 5.21 -26.73 -0.14 -1.83 16 25 C 0.09 1.36 6.01 -3.66 -0.02 1.34 16 26 N -0.26 -3.39 8.44 33.42 0.28 -3.11 16 27 N -0.28 -2.89 3.70 -63.86 -0.24 -3.12 16 28 C 0.08 0.47 11.11 59.85 0.66 1.13 16 29 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 32 H 0.08 0.36 6.86 -51.93 -0.36 0.00 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.16 1.80 7.48 -52.49 -0.39 1.40 16 37 H 0.09 1.33 6.98 -51.93 -0.36 0.96 16 38 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.88 7.12 -51.93 -0.37 1.52 16 42 H 0.02 0.59 8.09 -51.93 -0.42 0.17 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 45 H 0.04 0.79 7.41 -51.93 -0.38 0.41 16 46 H 0.08 1.71 8.01 -51.93 -0.42 1.30 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.06 1.00 7.49 -51.93 -0.39 0.61 16 49 H 0.12 1.84 4.07 -79.39 -0.32 1.51 16 50 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.09 0.28 6.88 -51.93 -0.36 -0.08 16 LS Contribution 405.22 15.07 6.11 6.11 Total: -1.00 -34.71 405.22 -9.30 -44.01 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.76 Total: -0.99 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.23 Total: 3.16 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.47 Total: -59.55 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.71 -9.30 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035704362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.010 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds