Wall clock time and date at job start Wed Apr 1 2020 04:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 C 1.50695 * 109.47119 * 120.00094 * 2 1 3 5 5 C 1.35371 * 126.38342 * 324.69280 * 4 2 1 6 6 C 1.41504 * 105.50245 * 179.86991 * 5 4 2 7 7 C 1.47711 * 126.52193 * 180.12985 * 6 5 4 8 8 O 1.21568 * 119.99507 * 7.08195 * 7 6 5 9 9 N 1.34773 * 120.00271 * 187.08314 * 7 6 5 10 10 C 1.46880 * 120.46732 * 186.87598 * 9 7 6 11 11 C 1.52857 * 109.01871 * 235.49059 * 10 9 7 12 12 C 1.52676 * 109.17615 * 307.81519 * 11 10 9 13 13 C 1.53479 * 113.62333 * 188.98976 * 12 11 10 14 14 N 1.47671 * 85.98876 * 137.71298 * 13 12 11 15 15 C 1.36932 * 134.45923 * 155.70297 * 14 13 12 16 16 H 1.08001 * 120.00084 * 179.97438 * 15 14 13 17 17 C 1.38809 * 119.99983 * 359.96871 * 15 14 13 18 18 N 1.31618 * 120.00071 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00039 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46614 * 60.00401 * 19 17 15 21 21 H 1.48498 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46932 * 300.00425 * 19 17 15 23 23 C 1.47674 * 91.08418 * 335.68061 * 14 13 12 24 24 C 1.52672 * 113.18189 * 57.45945 * 12 11 10 25 25 C 1.46889 * 120.46339 * 7.15577 * 9 7 6 26 26 N 1.31820 * 106.96094 * 0.39528 * 6 5 4 27 27 N 1.28466 * 110.07183 * 359.74932 * 26 6 5 28 28 C 1.46499 * 124.88092 * 180.02562 * 27 26 6 29 29 H 1.09009 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46931 * 60.00293 * 1 2 3 31 31 H 1.08998 * 109.47368 * 299.99738 * 1 2 3 32 32 H 1.09002 * 109.46945 * 240.00029 * 2 1 3 33 33 H 1.08998 * 109.46933 * 59.99995 * 3 2 1 34 34 H 1.08996 * 109.46649 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47081 * 299.99896 * 3 2 1 36 36 H 1.07997 * 127.24924 * 359.95493 * 5 4 2 37 37 H 1.09000 * 109.58756 * 355.31522 * 10 9 7 38 38 H 1.09005 * 109.58470 * 115.74836 * 10 9 7 39 39 H 1.08999 * 109.60723 * 187.84211 * 11 10 9 40 40 H 1.08998 * 109.44777 * 67.69806 * 11 10 9 41 41 H 1.09001 * 113.79329 * 251.98187 * 13 12 11 42 42 H 1.09003 * 113.78708 * 23.44450 * 13 12 11 43 43 H 0.96998 * 120.00267 * 179.97438 * 18 17 15 44 44 H 1.08994 * 113.79416 * 270.04726 * 23 14 13 45 45 H 1.08996 * 113.78819 * 138.57973 * 23 14 13 46 46 H 1.09001 * 109.53024 * 182.51848 * 24 12 11 47 47 H 1.09004 * 109.59085 * 62.33583 * 24 12 11 48 48 H 1.09001 * 109.58195 * 244.25299 * 25 9 7 49 49 H 1.08994 * 109.58874 * 4.68381 * 25 9 7 50 50 H 1.08998 * 109.47188 * 269.96429 * 28 27 26 51 51 H 1.08995 * 109.47101 * 29.96392 * 28 27 26 52 52 H 1.09000 * 109.47078 * 149.96735 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.4615 -0.6917 2.4577 6 6 2.2886 -1.5013 3.2719 7 6 2.0890 -1.8010 4.7045 8 8 1.0717 -1.4416 5.2646 9 7 3.0347 -2.4729 5.3905 10 6 2.7854 -2.9080 6.7711 11 6 3.8881 -2.3558 7.6742 12 6 5.2485 -2.7254 7.0879 13 6 6.4260 -2.4131 8.0215 14 7 6.9661 -3.7242 7.6090 15 6 8.2196 -4.2733 7.5623 16 1 8.3530 -5.2853 7.2096 17 6 9.3189 -3.5292 7.9682 18 7 9.1563 -2.2960 8.3985 19 14 11.0289 -4.2786 7.9052 20 1 11.3506 -4.6603 6.5066 21 1 12.0222 -3.2865 8.3891 22 1 11.0728 -5.4848 8.7702 23 6 5.6125 -4.2059 7.2677 24 6 5.4468 -2.2168 5.6621 25 6 4.3314 -2.7749 4.7702 26 7 3.2742 -1.9325 2.5102 27 7 3.1389 -1.4796 1.3157 28 6 4.0533 -1.7580 0.2055 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 0.5632 -0.1700 2.7530 37 1 1.8189 -2.5300 7.1044 38 1 2.7901 -3.9970 6.8174 39 1 3.7927 -2.7844 8.6718 40 1 3.7994 -1.2711 7.7335 41 1 7.0314 -1.5665 7.6977 42 1 6.1504 -2.3628 9.0749 43 1 9.9244 -1.7761 8.6825 44 1 5.0953 -4.6883 8.0970 45 1 5.5714 -4.7840 6.3446 46 1 6.4144 -2.5505 5.2874 47 1 5.4089 -1.1274 5.6541 48 1 4.4472 -3.8544 4.6727 49 1 4.3830 -2.3094 3.7860 50 1 4.8358 -0.9996 0.1804 51 1 4.5041 -2.7407 0.3438 52 1 3.5004 -1.7408 -0.7337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035704362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:49 Heat of formation + Delta-G solvation = 84.397340 kcal Electronic energy + Delta-G solvation = -31424.186813 eV Core-core repulsion = 27426.718438 eV Total energy + Delta-G solvation = -3997.468375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.78438 -41.45340 -39.96339 -37.11266 -36.66480 -34.61784 -34.29251 -32.46351 -31.84709 -30.61705 -28.98990 -28.14221 -27.99599 -26.75006 -25.45265 -24.53608 -23.87432 -23.43920 -22.40954 -21.14416 -20.37684 -18.81801 -18.69315 -18.06372 -17.54110 -17.32345 -16.85942 -16.81711 -16.14899 -16.08192 -15.64017 -15.49682 -15.13289 -15.03564 -14.71173 -14.60733 -14.48820 -14.14580 -13.94970 -13.73446 -13.59489 -13.47081 -13.36313 -13.10644 -12.98654 -12.90361 -12.81903 -12.64488 -12.56261 -12.23631 -12.17093 -12.08983 -11.96916 -11.74483 -11.64861 -11.36969 -11.13408 -10.99236 -10.93739 -10.72106 -10.12482 -9.90064 -9.58153 -8.87475 -7.87386 -5.20208 0.49470 1.12554 1.44271 1.47934 1.52251 1.54007 2.03798 2.33826 2.48753 3.23790 3.32321 3.42375 3.52059 3.63682 3.74253 3.95143 3.98842 4.11372 4.18716 4.21313 4.33504 4.34253 4.40618 4.40961 4.50325 4.61391 4.64451 4.68168 4.70761 4.73669 4.80072 4.85095 4.87335 4.88873 4.94595 5.00585 5.04339 5.06105 5.14568 5.17493 5.18300 5.28017 5.32520 5.37177 5.40463 5.46440 5.57259 5.60454 5.74425 5.94357 5.96948 6.34354 6.85664 6.94457 7.13905 7.63886 8.61674 9.29322 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002599 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.829121 B =10772.485130 C =11946.204486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.020 4.020 3 C -0.143 4.143 4 C 0.034 3.966 5 C -0.195 4.195 6 C -0.038 4.038 7 C 0.598 3.402 8 O -0.573 6.573 9 N -0.593 5.593 10 C 0.118 3.882 11 C -0.109 4.109 12 C -0.084 4.084 13 C 0.169 3.831 14 N -0.637 5.637 15 C -0.230 4.230 16 H 0.082 0.918 17 C -0.070 4.070 18 N -0.955 5.955 19 Si 0.977 3.023 20 H -0.274 1.274 21 H -0.296 1.296 22 H -0.279 1.279 23 C 0.131 3.869 24 C -0.087 4.087 25 C 0.102 3.898 26 N -0.272 5.272 27 N -0.277 5.277 28 C 0.069 3.931 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.012 0.988 43 H 0.247 0.753 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.071 0.929 49 H 0.131 0.869 50 H 0.099 0.901 51 H 0.102 0.898 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.188 4.264 -22.678 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.091 4.091 5 C -0.223 4.223 6 C -0.195 4.195 7 C 0.386 3.614 8 O -0.452 6.452 9 N -0.324 5.324 10 C -0.003 4.003 11 C -0.148 4.148 12 C -0.085 4.085 13 C 0.044 3.956 14 N -0.363 5.363 15 C -0.359 4.359 16 H 0.100 0.900 17 C -0.262 4.262 18 N -0.605 5.605 19 Si 0.805 3.195 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.205 1.205 23 C 0.006 3.994 24 C -0.125 4.125 25 C -0.021 4.021 26 N -0.109 5.109 27 N -0.065 5.065 28 C -0.069 4.069 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.176 0.824 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.148 0.852 50 H 0.117 0.883 51 H 0.121 0.879 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.312 3.713 -22.428 27.980 hybrid contribution 0.810 0.152 0.999 1.296 sum -15.501 3.865 -21.428 26.728 Atomic orbital electron populations 1.21840 0.92659 1.02405 1.03197 1.19855 0.97018 0.95552 0.91571 1.21847 1.01065 0.94104 1.03056 1.21832 0.89957 0.98910 0.98450 1.21552 1.03501 1.05224 0.92003 1.21762 0.97295 1.05869 0.94607 1.17308 0.82688 0.76990 0.84455 1.90714 1.29894 1.54542 1.70018 1.47994 1.15118 1.54734 1.14547 1.21570 0.99144 0.99884 0.79746 1.21660 0.92831 1.01096 0.99165 1.22133 0.94031 0.96470 0.95864 1.22147 0.90135 0.89405 0.93920 1.46320 1.00994 1.13588 1.75385 1.19380 0.83084 0.97526 1.35872 0.89981 1.25610 1.01537 0.96987 1.02109 1.70022 1.29685 1.10149 1.50599 0.85173 0.79284 0.76953 0.78061 1.20028 1.22228 1.20519 1.22738 0.84442 0.94495 0.97715 1.21358 0.98318 0.99338 0.93509 1.22447 0.79938 1.01279 0.98460 1.73293 1.22715 1.22286 0.92584 1.45947 1.19497 1.33254 1.07771 1.22637 0.93262 1.05238 0.85796 0.92724 0.89734 0.92695 0.87522 0.93239 0.92766 0.89613 0.82405 0.89162 0.89836 0.89596 0.92223 0.94608 0.96978 0.94455 0.93661 0.92912 0.92079 0.93065 0.91117 0.85171 0.88257 0.87940 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.79 71.98 0.63 -0.63 16 2 C -0.02 -0.19 3.10 -11.54 -0.04 -0.22 16 3 C -0.14 -1.23 9.18 71.98 0.66 -0.57 16 4 C 0.03 0.59 5.84 41.40 0.24 0.83 16 5 C -0.19 -4.69 9.97 22.41 0.22 -4.47 16 6 C -0.04 -1.10 6.83 42.46 0.29 -0.81 16 7 C 0.60 19.90 7.68 86.75 0.67 20.57 16 8 O -0.57 -21.65 16.34 -3.93 -0.06 -21.72 16 9 N -0.59 -18.51 2.95 -823.06 -2.43 -20.94 16 10 C 0.12 3.45 6.29 86.26 0.54 3.99 16 11 C -0.11 -3.46 5.24 30.44 0.16 -3.30 16 12 C -0.08 -3.19 0.77 -52.03 -0.04 -3.23 16 13 C 0.17 8.38 6.64 86.31 0.57 8.96 16 14 N -0.64 -33.31 3.53 -722.64 -2.55 -35.86 16 15 C -0.23 -13.14 10.70 84.03 0.90 -12.24 16 16 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 17 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 18 N -0.96 -59.17 11.39 21.65 0.25 -58.92 16 19 Si 0.98 46.52 29.55 68.60 2.03 48.54 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 C 0.13 5.31 7.73 86.32 0.67 5.98 16 24 C -0.09 -3.16 5.21 30.60 0.16 -3.00 16 25 C 0.10 3.10 6.01 86.42 0.52 3.62 16 26 N -0.27 -6.95 8.44 -48.17 -0.41 -7.35 16 27 N -0.28 -5.07 3.70 -355.94 -1.32 -6.39 16 28 C 0.07 0.57 11.11 127.77 1.42 1.99 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.05 0.60 7.36 -2.39 -0.02 0.58 16 32 H 0.11 0.46 6.86 -2.39 -0.02 0.44 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.09 0.40 8.14 -2.39 -0.02 0.39 16 36 H 0.16 3.66 7.48 -2.91 -0.02 3.64 16 37 H 0.09 2.65 6.98 -2.39 -0.02 2.63 16 38 H 0.08 2.19 8.08 -2.38 -0.02 2.17 16 39 H 0.09 2.56 8.12 -2.39 -0.02 2.54 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.04 2.00 7.12 -2.39 -0.02 1.99 16 42 H 0.01 0.63 8.09 -2.39 -0.02 0.61 16 43 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 45 H 0.05 2.02 7.41 -2.39 -0.02 2.00 16 46 H 0.06 2.52 8.01 -2.39 -0.02 2.50 16 47 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 48 H 0.07 2.09 7.49 -2.39 -0.02 2.08 16 49 H 0.13 3.87 4.07 -37.91 -0.15 3.71 16 50 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.13 0.19 6.88 -2.39 -0.02 0.17 16 Total: -1.00 -77.55 405.22 4.31 -73.23 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.76 Total: 15.53 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 8.04 Total: 13.87 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -6.46 Total: -129.46 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -77.55 4.31 -73.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035704362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.630 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds