Wall clock time and date at job start Wed Apr 1 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 C 1.52997 * 109.46973 * 240.00046 * 2 1 3 5 5 C 1.50696 * 109.47173 * 120.00276 * 2 1 3 6 6 N 1.35387 * 126.56158 * 354.88175 * 5 2 1 7 7 H 0.96993 * 126.13905 * 0.02562 * 6 5 2 8 8 C 1.35852 * 107.72510 * 180.02562 * 6 5 2 9 9 N 1.30170 * 109.00307 * 0.27080 * 8 6 5 10 10 C 1.35761 * 108.86762 * 359.56909 * 9 8 6 11 11 C 1.47328 * 126.23411 * 180.17600 * 10 9 8 12 12 O 1.21623 * 119.99865 * 256.29812 * 11 10 9 13 13 N 1.34779 * 119.99904 * 76.29681 * 11 10 9 14 14 C 1.46879 * 120.46805 * 4.58739 * 13 11 10 15 15 C 1.52864 * 109.01389 * 235.48863 * 14 13 11 16 16 C 1.52673 * 109.17658 * 307.81583 * 15 14 13 17 17 C 1.53479 * 113.62044 * 188.99228 * 16 15 14 18 18 N 1.47668 * 85.98616 * 137.70923 * 17 16 15 19 19 C 1.36937 * 134.45534 * 155.69377 * 18 17 16 20 20 H 1.07999 * 120.00134 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99849 * 359.97438 * 19 18 17 22 22 N 1.31612 * 120.00268 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99536 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47646 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47338 * 119.99853 * 23 21 19 26 26 H 1.48509 * 109.46768 * 239.99326 * 23 21 19 27 27 C 1.47661 * 91.08568 * 335.68302 * 18 17 16 28 28 C 1.52674 * 113.18277 * 57.46522 * 16 15 14 29 29 C 1.46883 * 120.45868 * 184.86439 * 13 11 10 30 30 H 1.08991 * 109.47114 * 299.99615 * 1 2 3 31 31 H 1.08999 * 109.46884 * 60.00025 * 1 2 3 32 32 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46618 * 185.46762 * 3 2 1 34 34 H 1.08999 * 109.47144 * 305.47509 * 3 2 1 35 35 H 1.09000 * 109.46599 * 65.47118 * 3 2 1 36 36 H 1.09003 * 109.47772 * 304.62152 * 4 2 1 37 37 H 1.09005 * 109.47052 * 64.61977 * 4 2 1 38 38 H 1.08997 * 109.47390 * 184.61828 * 4 2 1 39 39 H 1.08001 * 125.49620 * 179.97438 * 8 6 5 40 40 H 1.09006 * 109.58824 * 355.31109 * 14 13 11 41 41 H 1.08991 * 109.59150 * 115.74910 * 14 13 11 42 42 H 1.09003 * 109.60430 * 187.83721 * 15 14 13 43 43 H 1.08996 * 109.44494 * 67.69838 * 15 14 13 44 44 H 1.09004 * 113.79049 * 251.97781 * 17 16 15 45 45 H 1.09004 * 113.79056 * 23.44576 * 17 16 15 46 46 H 0.96998 * 119.99833 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.78692 * 270.04536 * 27 18 17 48 48 H 1.08998 * 113.79410 * 138.58467 * 27 18 17 49 49 H 1.09001 * 109.52865 * 182.51840 * 28 16 15 50 50 H 1.08991 * 109.59142 * 62.33485 * 28 16 15 51 51 H 1.09003 * 109.58626 * 244.25376 * 29 13 11 52 52 H 1.08995 * 109.59159 * 4.68521 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.2801 -1.1872 2.2500 7 1 0.3143 -1.1337 2.3220 8 6 2.1206 -1.7539 3.1544 9 7 3.3447 -1.6347 2.7281 10 6 3.3322 -0.9957 1.5303 11 6 4.5087 -0.6652 0.7073 12 8 4.9279 0.4760 0.6763 13 7 5.1203 -1.6276 -0.0112 14 6 4.5647 -2.9864 -0.0612 15 6 5.6375 -3.9798 0.3850 16 6 6.9090 -3.7428 -0.4262 17 6 7.9810 -4.8213 -0.2184 18 7 8.1852 -4.7528 -1.6793 19 6 9.2281 -5.0466 -2.5167 20 1 9.1215 -4.9052 -3.5820 21 6 10.4222 -5.5264 -1.9962 22 7 10.5523 -5.6983 -0.6978 23 14 11.8445 -5.9278 -3.1387 24 1 11.4460 -5.6499 -4.5419 25 1 13.0178 -5.0904 -2.7817 26 1 12.2004 -7.3630 -3.0005 27 6 6.8141 -4.2407 -1.8752 28 6 7.4431 -2.3178 -0.3039 29 6 6.3551 -1.3338 -0.7503 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1256 1.4440 -0.0979 34 1 1.5988 1.9839 -0.8369 35 1 1.7588 1.9272 0.9350 36 1 1.6107 -1.7222 -1.2917 37 1 1.7458 -0.1618 -2.1373 38 1 3.1269 -0.7935 -1.2089 39 1 1.8218 -2.2230 4.0802 40 1 3.7055 -3.0547 0.6062 41 1 4.2575 -3.2183 -1.0808 42 1 5.2844 -4.9978 0.2203 43 1 5.8486 -3.8343 1.4444 44 1 8.8391 -4.4822 0.3620 45 1 7.5832 -5.7761 0.1256 46 1 11.3868 -6.0331 -0.3342 47 1 6.0697 -5.0229 -2.0236 48 1 6.7448 -3.4401 -2.6116 49 1 8.3217 -2.2023 -0.9387 50 1 7.7134 -2.1166 0.7326 51 1 6.1766 -1.4468 -1.8196 52 1 6.6749 -0.3139 -0.5369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035710933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:27 Heat of formation + Delta-G solvation = 70.932549 kcal Electronic energy + Delta-G solvation = -32318.260370 eV Core-core repulsion = 28320.208119 eV Total energy + Delta-G solvation = -3998.052252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.56399 -40.00490 -38.46535 -37.04834 -35.60127 -32.94668 -32.36131 -30.97942 -30.41879 -29.24439 -27.65141 -27.47641 -26.78768 -25.00960 -24.24628 -23.31577 -22.53696 -22.00005 -21.10509 -20.45073 -19.02906 -18.09291 -17.18563 -16.64166 -16.50775 -15.84561 -15.26598 -15.25712 -14.94145 -14.80339 -14.51743 -14.25047 -14.18242 -13.85805 -13.71473 -13.53031 -13.49080 -12.86811 -12.70743 -12.55304 -12.36573 -12.24849 -12.07468 -11.90978 -11.74441 -11.57848 -11.33921 -11.16577 -11.02525 -10.96539 -10.81034 -10.73722 -10.33504 -10.29133 -10.26475 -10.04956 -9.83701 -9.63494 -9.43991 -9.25554 -8.72405 -8.58828 -8.31235 -6.78366 -5.69545 -3.01013 1.64453 2.50702 2.68996 2.85293 3.28794 3.42674 3.47917 3.50516 4.15061 4.35435 4.42083 4.51646 4.54640 4.84837 4.88456 5.08019 5.08978 5.16559 5.24257 5.25718 5.34892 5.40888 5.44012 5.47251 5.50139 5.53056 5.57683 5.66844 5.67259 5.76815 5.80304 5.81127 5.98900 6.01791 6.03909 6.07589 6.17488 6.21836 6.34564 6.39082 6.43870 6.56216 6.72689 6.75018 6.92229 6.97025 7.01543 7.32791 7.46875 7.57902 7.67409 7.68977 8.06318 8.30377 9.12280 9.78409 10.69606 11.47425 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.002634 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.754397 B =10628.977103 C =10954.878862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.004 3.996 3 C -0.147 4.147 4 C -0.144 4.144 5 C 0.043 3.957 6 N -0.563 5.563 7 H 0.420 0.580 8 C 0.182 3.818 9 N -0.453 5.453 10 C -0.033 4.033 11 C 0.609 3.391 12 O -0.539 6.539 13 N -0.591 5.591 14 C 0.118 3.882 15 C -0.116 4.116 16 C -0.107 4.107 17 C 0.174 3.826 18 N -0.609 5.609 19 C -0.219 4.219 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.126 3.874 28 C -0.096 4.096 29 C 0.114 3.886 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.214 0.786 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.252 0.748 47 H 0.030 0.970 48 H 0.040 0.960 49 H 0.087 0.913 50 H 0.061 0.939 51 H 0.068 0.932 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.273 10.270 4.732 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.003 3.997 3 C -0.205 4.205 4 C -0.202 4.202 5 C -0.077 4.077 6 N -0.166 5.166 7 H 0.259 0.741 8 C -0.103 4.103 9 N -0.172 5.172 10 C -0.164 4.164 11 C 0.395 3.605 12 O -0.415 6.415 13 N -0.323 5.323 14 C -0.005 4.005 15 C -0.155 4.155 16 C -0.108 4.108 17 C 0.048 3.952 18 N -0.335 5.335 19 C -0.347 4.347 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.000 4.000 28 C -0.134 4.134 29 C -0.008 4.008 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.062 0.938 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.105 0.895 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.909 10.477 5.016 26.581 hybrid contribution -0.488 -0.439 -0.661 0.931 sum -24.396 10.038 4.355 26.738 Atomic orbital electron populations 1.21976 0.93993 1.02012 1.02767 1.19153 0.95299 0.95403 0.89893 1.22037 1.03893 0.92931 1.01625 1.21987 1.02418 1.00090 0.95720 1.20900 0.90750 1.03286 0.92753 1.43082 1.10768 1.45172 1.17536 0.74111 1.25173 0.84823 1.02718 0.97560 1.70759 1.20676 1.16477 1.09269 1.20189 0.92285 1.07721 0.96162 1.16935 0.81016 0.84478 0.78095 1.90749 1.64942 1.20233 1.65599 1.47997 1.25823 1.10285 1.48228 1.21584 0.96592 0.81126 1.01198 1.21714 0.95102 0.98187 1.00539 1.22368 0.95515 0.96413 0.96547 1.22225 0.93682 0.92446 0.86821 1.45966 1.07788 1.76478 1.03276 1.19050 0.89726 1.36776 0.89179 0.90420 1.24755 0.97882 1.01882 0.95998 1.69829 1.25528 1.51437 1.09955 0.86101 0.82641 0.77659 0.79692 1.20559 1.21769 1.21894 1.22586 0.88384 0.95087 0.93903 1.21483 0.97541 0.92458 1.01915 1.21741 0.83321 1.00428 0.95280 0.92605 0.91095 0.92363 0.89913 0.92032 0.92759 0.92247 0.91483 0.91461 0.77005 0.90571 0.91594 0.91015 0.91467 0.91009 0.95829 0.93801 0.95286 0.94195 0.89460 0.92008 0.91330 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 7.61 37.16 0.28 -0.53 16 2 C 0.00 0.03 0.80 -155.66 -0.12 -0.09 16 3 C -0.15 -1.43 8.33 37.16 0.31 -1.12 16 4 C -0.14 -1.29 8.35 37.16 0.31 -0.98 16 5 C 0.04 0.43 5.59 -81.68 -0.46 -0.02 16 6 N -0.56 -3.99 5.83 -10.11 -0.06 -4.05 16 7 H 0.42 1.46 8.06 -40.82 -0.33 1.13 16 8 C 0.18 1.55 13.04 -89.91 -1.17 0.38 16 9 N -0.45 -6.04 11.18 -11.03 -0.12 -6.16 16 10 C -0.03 -0.45 4.65 -83.09 -0.39 -0.84 16 11 C 0.61 9.58 5.11 -12.56 -0.06 9.52 16 12 O -0.54 -9.85 14.55 5.26 0.08 -9.78 16 13 N -0.59 -8.76 2.42 -174.25 -0.42 -9.18 16 14 C 0.12 1.58 6.09 -3.91 -0.02 1.56 16 15 C -0.12 -1.79 5.24 -26.97 -0.14 -1.94 16 16 C -0.11 -1.98 0.77 -154.43 -0.12 -2.10 16 17 C 0.17 4.10 6.64 -3.16 -0.02 4.08 16 18 N -0.61 -15.51 3.53 -179.80 -0.64 -16.15 16 19 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -27.58 11.39 55.49 0.63 -26.94 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C 0.13 2.54 7.72 -3.15 -0.02 2.51 16 28 C -0.10 -1.72 5.22 -26.72 -0.14 -1.86 16 29 C 0.11 1.77 6.29 -3.66 -0.02 1.75 16 30 H 0.05 0.25 7.95 -51.93 -0.41 -0.16 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 1.06 5.61 -51.93 -0.29 0.77 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.76 5.41 -51.93 -0.28 0.48 16 39 H 0.21 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.08 0.98 6.18 -51.93 -0.32 0.66 16 41 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.90 7.12 -51.93 -0.37 1.53 16 45 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 48 H 0.04 0.77 7.41 -51.93 -0.38 0.38 16 49 H 0.09 1.76 8.01 -51.93 -0.42 1.34 16 50 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.07 1.00 7.49 -51.93 -0.39 0.61 16 52 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -35.20 399.38 -10.18 -45.38 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.59 Total: -0.17 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -2.05 Total: 3.64 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.61 Total: -62.48 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.20 -10.18 -45.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035710933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.310 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds