Wall clock time and date at job start Wed Apr 1 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 C 1.52997 * 109.46973 * 240.00046 * 2 1 3 5 5 C 1.50696 * 109.47173 * 120.00276 * 2 1 3 6 6 N 1.35387 * 126.56158 * 354.88175 * 5 2 1 7 7 H 0.96993 * 126.13905 * 0.02562 * 6 5 2 8 8 C 1.35852 * 107.72510 * 180.02562 * 6 5 2 9 9 N 1.30170 * 109.00307 * 0.27080 * 8 6 5 10 10 C 1.35761 * 108.86762 * 359.56909 * 9 8 6 11 11 C 1.47328 * 126.23411 * 180.17600 * 10 9 8 12 12 O 1.21623 * 119.99865 * 256.29812 * 11 10 9 13 13 N 1.34779 * 119.99904 * 76.29681 * 11 10 9 14 14 C 1.46879 * 120.46805 * 4.58739 * 13 11 10 15 15 C 1.52864 * 109.01389 * 235.48863 * 14 13 11 16 16 C 1.52673 * 109.17658 * 307.81583 * 15 14 13 17 17 C 1.53479 * 113.62044 * 188.99228 * 16 15 14 18 18 N 1.47668 * 85.98616 * 137.70923 * 17 16 15 19 19 C 1.36937 * 134.45534 * 155.69377 * 18 17 16 20 20 H 1.07999 * 120.00134 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99849 * 359.97438 * 19 18 17 22 22 N 1.31612 * 120.00268 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99536 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47646 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47338 * 119.99853 * 23 21 19 26 26 H 1.48509 * 109.46768 * 239.99326 * 23 21 19 27 27 C 1.47661 * 91.08568 * 335.68302 * 18 17 16 28 28 C 1.52674 * 113.18277 * 57.46522 * 16 15 14 29 29 C 1.46883 * 120.45868 * 184.86439 * 13 11 10 30 30 H 1.08991 * 109.47114 * 299.99615 * 1 2 3 31 31 H 1.08999 * 109.46884 * 60.00025 * 1 2 3 32 32 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46618 * 185.46762 * 3 2 1 34 34 H 1.08999 * 109.47144 * 305.47509 * 3 2 1 35 35 H 1.09000 * 109.46599 * 65.47118 * 3 2 1 36 36 H 1.09003 * 109.47772 * 304.62152 * 4 2 1 37 37 H 1.09005 * 109.47052 * 64.61977 * 4 2 1 38 38 H 1.08997 * 109.47390 * 184.61828 * 4 2 1 39 39 H 1.08001 * 125.49620 * 179.97438 * 8 6 5 40 40 H 1.09006 * 109.58824 * 355.31109 * 14 13 11 41 41 H 1.08991 * 109.59150 * 115.74910 * 14 13 11 42 42 H 1.09003 * 109.60430 * 187.83721 * 15 14 13 43 43 H 1.08996 * 109.44494 * 67.69838 * 15 14 13 44 44 H 1.09004 * 113.79049 * 251.97781 * 17 16 15 45 45 H 1.09004 * 113.79056 * 23.44576 * 17 16 15 46 46 H 0.96998 * 119.99833 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.78692 * 270.04536 * 27 18 17 48 48 H 1.08998 * 113.79410 * 138.58467 * 27 18 17 49 49 H 1.09001 * 109.52865 * 182.51840 * 28 16 15 50 50 H 1.08991 * 109.59142 * 62.33485 * 28 16 15 51 51 H 1.09003 * 109.58626 * 244.25376 * 29 13 11 52 52 H 1.08995 * 109.59159 * 4.68521 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 7 1.2801 -1.1872 2.2500 7 1 0.3143 -1.1337 2.3220 8 6 2.1206 -1.7539 3.1544 9 7 3.3447 -1.6347 2.7281 10 6 3.3322 -0.9957 1.5303 11 6 4.5087 -0.6652 0.7073 12 8 4.9279 0.4760 0.6763 13 7 5.1203 -1.6276 -0.0112 14 6 4.5647 -2.9864 -0.0612 15 6 5.6375 -3.9798 0.3850 16 6 6.9090 -3.7428 -0.4262 17 6 7.9810 -4.8213 -0.2184 18 7 8.1852 -4.7528 -1.6793 19 6 9.2281 -5.0466 -2.5167 20 1 9.1215 -4.9052 -3.5820 21 6 10.4222 -5.5264 -1.9962 22 7 10.5523 -5.6983 -0.6978 23 14 11.8445 -5.9278 -3.1387 24 1 11.4460 -5.6499 -4.5419 25 1 13.0178 -5.0904 -2.7817 26 1 12.2004 -7.3630 -3.0005 27 6 6.8141 -4.2407 -1.8752 28 6 7.4431 -2.3178 -0.3039 29 6 6.3551 -1.3338 -0.7503 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1256 1.4440 -0.0979 34 1 1.5988 1.9839 -0.8369 35 1 1.7588 1.9272 0.9350 36 1 1.6107 -1.7222 -1.2917 37 1 1.7458 -0.1618 -2.1373 38 1 3.1269 -0.7935 -1.2089 39 1 1.8218 -2.2230 4.0802 40 1 3.7055 -3.0547 0.6062 41 1 4.2575 -3.2183 -1.0808 42 1 5.2844 -4.9978 0.2203 43 1 5.8486 -3.8343 1.4444 44 1 8.8391 -4.4822 0.3620 45 1 7.5832 -5.7761 0.1256 46 1 11.3868 -6.0331 -0.3342 47 1 6.0697 -5.0229 -2.0236 48 1 6.7448 -3.4401 -2.6116 49 1 8.3217 -2.2023 -0.9387 50 1 7.7134 -2.1166 0.7326 51 1 6.1766 -1.4468 -1.8196 52 1 6.6749 -0.3139 -0.5369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035710933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:25 Heat of formation + Delta-G solvation = 49.383811 kcal Electronic energy + Delta-G solvation = -32319.194794 eV Core-core repulsion = 28320.208119 eV Total energy + Delta-G solvation = -3998.986675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.31915 -41.39006 -39.89461 -37.70830 -37.02644 -34.41727 -33.67040 -32.24472 -32.02088 -30.12801 -28.62642 -28.17726 -28.14544 -26.74563 -25.57288 -24.70753 -23.66203 -22.99605 -22.47674 -21.34876 -20.16809 -19.01250 -18.67527 -18.33161 -17.71112 -16.90321 -16.84438 -16.26859 -16.07860 -16.03097 -15.63875 -15.55697 -15.21150 -15.08715 -14.77885 -14.70945 -14.51185 -14.24475 -14.02183 -13.69447 -13.61502 -13.20437 -13.15036 -13.11033 -12.88558 -12.83898 -12.63685 -12.58893 -12.39631 -12.15490 -12.11888 -11.96115 -11.82301 -11.64134 -11.56424 -11.32891 -11.15383 -11.02995 -10.98776 -10.80659 -10.79088 -9.59594 -9.37297 -8.85378 -7.86493 -5.18708 0.88035 1.45276 1.46263 1.48855 1.56331 1.86283 2.06405 2.29869 2.49466 3.33802 3.43774 3.49615 3.54442 3.63879 3.80909 3.96556 3.97134 3.98226 4.16450 4.23425 4.31579 4.35538 4.40236 4.42752 4.62032 4.66292 4.68823 4.73037 4.76726 4.81308 4.84040 4.88662 4.90590 4.93885 4.98006 5.01612 5.04490 5.10447 5.15803 5.20368 5.24343 5.31225 5.35413 5.36637 5.43682 5.46224 5.59262 5.61690 5.76219 5.98619 6.39691 6.50957 6.96086 6.96481 7.14244 7.65547 8.62990 9.30540 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.002634 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.754397 B =10628.977103 C =10954.878862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.003 3.997 3 C -0.145 4.145 4 C -0.144 4.144 5 C 0.056 3.944 6 N -0.544 5.544 7 H 0.441 0.559 8 C 0.200 3.800 9 N -0.505 5.505 10 C -0.072 4.072 11 C 0.608 3.392 12 O -0.575 6.575 13 N -0.591 5.591 14 C 0.128 3.872 15 C -0.108 4.108 16 C -0.081 4.081 17 C 0.169 3.831 18 N -0.637 5.637 19 C -0.227 4.227 20 H 0.083 0.917 21 C -0.071 4.071 22 N -0.955 5.955 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.294 1.294 27 C 0.132 3.868 28 C -0.088 4.088 29 C 0.125 3.875 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.255 0.745 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.032 0.968 45 H 0.015 0.985 46 H 0.246 0.754 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.048 0.952 51 H 0.084 0.916 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.238 10.229 4.077 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 C -0.202 4.202 4 C -0.202 4.202 5 C -0.065 4.065 6 N -0.148 5.148 7 H 0.284 0.716 8 C -0.085 4.085 9 N -0.225 5.225 10 C -0.201 4.201 11 C 0.396 3.604 12 O -0.454 6.454 13 N -0.322 5.322 14 C 0.005 3.995 15 C -0.146 4.146 16 C -0.083 4.083 17 C 0.043 3.957 18 N -0.364 5.364 19 C -0.355 4.355 20 H 0.101 0.899 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.222 1.222 26 H -0.221 1.221 27 C 0.008 3.992 28 C -0.127 4.127 29 C 0.003 3.997 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.271 0.729 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.033 0.967 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.102 0.898 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -27.948 10.437 4.343 30.147 hybrid contribution 0.693 -0.391 -0.402 0.892 sum -27.254 10.046 3.941 29.313 Atomic orbital electron populations 1.21953 0.91049 1.03302 1.03890 1.19228 0.97537 0.94052 0.89002 1.21986 1.01680 0.94362 1.02213 1.21986 1.00739 1.01042 0.96438 1.21029 0.89966 1.02034 0.93493 1.43015 1.11704 1.43908 1.16206 0.71647 1.25931 0.83668 1.00760 0.98131 1.70682 1.23504 1.18500 1.09826 1.19940 0.92546 1.10662 0.96966 1.17342 0.81438 0.83889 0.77713 1.90718 1.66213 1.21761 1.66727 1.48019 1.25304 1.10910 1.48007 1.21596 0.95883 0.79463 1.02532 1.21636 0.93946 0.99764 0.99299 1.22082 0.95241 0.94730 0.96205 1.22145 0.94025 0.93662 0.85834 1.46317 1.09588 1.76582 1.03871 1.19455 0.90727 1.35440 0.89897 0.89879 1.25589 1.00564 1.02747 0.97419 1.70031 1.25744 1.52943 1.11715 0.85055 0.79166 0.76811 0.78596 1.18811 1.22204 1.22146 1.22748 0.86021 0.95584 0.94851 1.21347 0.97580 0.93148 1.00606 1.21529 0.83085 0.99012 0.96101 0.91421 0.90193 0.90945 0.93455 0.90295 0.93021 0.91127 0.90344 0.94093 0.72948 0.89270 0.89651 0.89585 0.92422 0.94955 0.96739 0.94540 0.93229 0.92799 0.92138 0.93294 0.89828 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 7.61 71.98 0.55 -0.44 16 2 C 0.00 0.05 0.80 -52.93 -0.04 0.01 16 3 C -0.14 -2.64 8.33 71.98 0.60 -2.05 16 4 C -0.14 -2.24 8.35 71.98 0.60 -1.64 16 5 C 0.06 1.01 5.59 41.58 0.23 1.24 16 6 N -0.54 -5.74 5.83 -185.91 -1.08 -6.82 16 7 H 0.44 1.02 8.06 -92.71 -0.75 0.27 16 8 C 0.20 2.78 13.04 180.10 2.35 5.13 16 9 N -0.51 -12.74 11.18 -188.81 -2.11 -14.85 16 10 C -0.07 -1.89 4.65 40.50 0.19 -1.70 16 11 C 0.61 19.30 5.11 86.63 0.44 19.74 16 12 O -0.57 -21.86 14.55 -4.10 -0.06 -21.92 16 13 N -0.59 -17.32 2.42 -823.46 -1.99 -19.31 16 14 C 0.13 3.19 6.09 86.26 0.53 3.72 16 15 C -0.11 -3.20 5.24 30.44 0.16 -3.04 16 16 C -0.08 -3.03 0.77 -52.04 -0.04 -3.07 16 17 C 0.17 8.28 6.64 86.31 0.57 8.86 16 18 N -0.64 -32.94 3.53 -722.76 -2.55 -35.50 16 19 C -0.23 -12.90 10.70 84.03 0.90 -12.00 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.95 -59.48 11.39 21.65 0.25 -59.23 16 23 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 27 C 0.13 5.17 7.72 86.32 0.67 5.84 16 28 C -0.09 -3.29 5.22 30.60 0.16 -3.13 16 29 C 0.12 3.93 6.29 86.42 0.54 4.47 16 30 H 0.07 0.32 7.95 -2.39 -0.02 0.30 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.05 1.23 5.61 -2.39 -0.01 1.22 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.04 0.86 5.41 -2.39 -0.01 0.85 16 39 H 0.25 1.04 8.06 -2.91 -0.02 1.01 16 40 H 0.09 2.09 6.18 -2.38 -0.01 2.08 16 41 H 0.09 1.85 8.07 -2.39 -0.02 1.83 16 42 H 0.09 2.36 8.12 -2.39 -0.02 2.34 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.03 1.82 7.12 -2.39 -0.02 1.80 16 45 H 0.01 0.74 8.09 -2.38 -0.02 0.72 16 46 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 47 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 48 H 0.05 1.97 7.41 -2.39 -0.02 1.95 16 49 H 0.06 2.57 8.01 -2.39 -0.02 2.55 16 50 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.08 2.38 7.49 -2.39 -0.02 2.36 16 52 H 0.08 2.69 7.00 -2.39 -0.02 2.67 16 Total: -1.00 -81.37 399.38 3.52 -77.85 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.18 Total: 12.51 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 8.87 Total: 18.27 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -7.50 Total: -135.72 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.06 Total: -21.92 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -81.37 3.52 -77.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035710933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.236 kcal (2) G-P(sol) polarization free energy of solvation -81.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds