Wall clock time and date at job start Wed Apr 1 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47227 * 2 1 4 4 C 1.50696 * 109.47237 * 119.99920 * 2 1 3 5 5 N 1.30502 * 125.65586 * 300.17836 * 4 2 1 6 6 C 1.34122 * 109.25546 * 180.29213 * 5 4 2 7 7 C 1.34664 * 108.02460 * 359.72114 * 6 5 4 8 8 N 1.35054 * 125.64815 * 120.00053 * 4 2 1 9 9 C 1.46498 * 126.39706 * 359.97438 * 8 4 2 10 10 C 1.50694 * 109.47289 * 84.71140 * 9 8 4 11 11 O 1.21285 * 120.00280 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99933 * 179.97438 * 10 9 8 13 13 C 1.46876 * 120.46644 * 359.72472 * 12 10 9 14 14 C 1.53341 * 108.75887 * 235.80784 * 13 12 10 15 15 C 1.52668 * 109.10681 * 307.58357 * 14 13 12 16 16 C 1.53489 * 113.62322 * 189.13134 * 15 14 13 17 17 N 1.47664 * 85.98775 * 137.70931 * 16 15 14 18 18 C 1.36934 * 134.45704 * 155.72075 * 17 16 15 19 19 H 1.08006 * 119.99976 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00272 * 359.94486 * 18 17 16 21 21 N 1.31626 * 119.99831 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00475 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46779 * 90.00242 * 22 20 18 24 24 H 1.48500 * 109.47275 * 210.00295 * 22 20 18 25 25 H 1.48496 * 109.46878 * 330.00434 * 22 20 18 26 26 C 1.47672 * 91.08594 * 335.68091 * 17 16 15 27 27 C 1.52670 * 113.18671 * 57.59790 * 15 14 13 28 28 C 1.46886 * 120.46383 * 180.02562 * 12 10 9 29 29 H 1.09001 * 109.47082 * 299.99630 * 1 2 3 30 30 H 1.09000 * 109.46945 * 59.99761 * 1 2 3 31 31 H 1.08995 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47082 * 240.00369 * 2 1 3 33 33 H 1.08997 * 109.47379 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47000 * 300.00388 * 3 2 1 35 35 H 1.09001 * 109.47006 * 59.99682 * 3 2 1 36 36 H 1.08002 * 125.98286 * 179.72746 * 6 5 4 37 37 H 1.08006 * 126.59131 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47146 * 324.71113 * 9 8 4 39 39 H 1.09000 * 109.46949 * 204.71456 * 9 8 4 40 40 H 1.09007 * 109.58765 * 355.58780 * 13 12 10 41 41 H 1.08996 * 109.59165 * 116.02295 * 13 12 10 42 42 H 1.08998 * 109.53005 * 187.69572 * 14 13 12 43 43 H 1.09000 * 109.53124 * 67.47355 * 14 13 12 44 44 H 1.09004 * 113.78776 * 251.97483 * 16 15 14 45 45 H 1.08995 * 113.78635 * 23.43647 * 16 15 14 46 46 H 0.96995 * 119.99997 * 179.97438 * 21 20 18 47 47 H 1.09007 * 113.79224 * 270.04987 * 26 17 16 48 48 H 1.08994 * 113.79025 * 138.58519 * 26 17 16 49 49 H 1.09003 * 109.53518 * 182.51522 * 27 15 14 50 50 H 1.09007 * 109.53070 * 62.29639 * 27 15 14 51 51 H 1.09002 * 109.58749 * 243.97941 * 28 12 10 52 52 H 1.09002 * 109.59013 * 4.41059 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7834 -0.3639 2.4637 6 6 2.3970 -1.2185 3.2957 7 6 3.0460 -2.1327 2.5497 8 7 2.8121 -1.8130 1.2395 9 6 3.3181 -2.5295 0.0661 10 6 4.5861 -1.8728 -0.4153 11 8 5.0239 -0.9015 0.1643 12 7 5.2338 -2.3649 -1.4900 13 6 4.7161 -3.5442 -2.1960 14 6 5.8140 -4.6138 -2.2403 15 6 7.0900 -3.9969 -2.8076 16 6 8.1902 -5.0248 -3.1059 17 7 8.4145 -4.2683 -4.3540 18 6 9.4780 -4.1109 -5.2021 19 1 9.3835 -3.4833 -6.0761 20 6 10.6777 -4.7573 -4.9385 21 7 10.7929 -5.5221 -3.8734 22 14 12.1283 -4.5432 -6.0958 23 1 12.9439 -3.3823 -5.6575 24 1 12.9634 -5.7709 -6.0752 25 1 11.6305 -4.3061 -7.4746 26 6 7.0319 -3.7503 -4.3216 27 6 7.5801 -2.7902 -2.0109 28 6 6.4708 -1.7331 -1.9677 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 2.3744 -1.1801 4.3748 37 1 3.6379 -2.9590 2.9150 38 1 2.5708 -2.5016 -0.7269 39 1 3.5247 -3.5656 0.3343 40 1 3.8467 -3.9345 -1.6668 41 1 4.4342 -3.2675 -3.2119 42 1 5.4937 -5.4386 -2.8769 43 1 6.0043 -4.9825 -1.2324 44 1 9.0291 -4.9851 -2.4110 45 1 7.8156 -6.0358 -3.2657 46 1 11.6311 -5.9742 -3.6893 47 1 6.3131 -4.3827 -4.8429 48 1 6.9502 -2.6979 -4.5930 49 1 8.4644 -2.3712 -2.4910 50 1 7.8276 -3.1001 -0.9956 51 1 6.3123 -1.3290 -2.9676 52 1 6.7573 -0.9305 -1.2881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035806851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:57 Heat of formation + Delta-G solvation = 60.809582 kcal Electronic energy + Delta-G solvation = -31408.328389 eV Core-core repulsion = 27409.837173 eV Total energy + Delta-G solvation = -3998.491217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.14450 -41.53753 -40.08978 -37.13612 -36.25289 -35.06127 -34.41090 -32.38372 -32.04619 -29.82641 -29.10534 -28.24686 -28.02299 -26.71007 -25.06724 -24.37690 -23.75048 -23.01421 -22.23065 -21.12011 -19.91049 -19.10278 -18.70011 -18.34099 -18.00148 -16.93943 -16.72840 -16.68135 -16.11428 -15.86277 -15.74212 -15.59476 -15.21660 -15.09958 -14.72768 -14.64073 -14.44023 -14.30632 -14.03372 -13.80288 -13.72770 -13.61635 -13.28410 -13.10909 -12.99057 -12.92906 -12.82422 -12.63755 -12.38186 -12.20249 -12.14835 -12.10205 -11.87712 -11.66004 -11.55911 -11.43248 -11.12944 -10.98284 -10.89688 -10.81622 -10.39011 -9.65903 -9.24731 -8.86655 -7.89682 -5.20939 1.00639 1.43511 1.44663 1.44870 1.52898 1.68891 2.10586 2.24211 2.47315 3.31147 3.34114 3.42970 3.44150 3.61582 3.73062 3.78596 3.93944 3.96747 4.07711 4.14428 4.17232 4.22496 4.28772 4.37356 4.43981 4.60765 4.62516 4.70428 4.75426 4.76933 4.79256 4.81525 4.89661 4.92348 4.94752 4.97918 5.05460 5.07881 5.14643 5.22886 5.29443 5.30118 5.35279 5.35820 5.44617 5.48330 5.61081 5.77639 5.88400 5.98151 6.19384 6.37908 6.94628 7.02918 7.19944 7.63836 8.60566 9.27043 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024515 B = 0.002223 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.892207 B =12594.005466 C =12839.461763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C -0.134 4.134 4 C 0.215 3.785 5 N -0.523 5.523 6 C -0.056 4.056 7 C -0.051 4.051 8 N -0.445 5.445 9 C 0.084 3.916 10 C 0.495 3.505 11 O -0.575 6.575 12 N -0.596 5.596 13 C 0.107 3.893 14 C -0.114 4.114 15 C -0.081 4.081 16 C 0.166 3.834 17 N -0.642 5.642 18 C -0.227 4.227 19 H 0.081 0.919 20 C -0.070 4.070 21 N -0.954 5.954 22 Si 0.972 3.028 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.130 3.870 27 C -0.089 4.089 28 C 0.127 3.873 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.032 0.968 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.181 0.819 37 H 0.198 0.802 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.246 0.754 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.050 0.950 50 H 0.052 0.948 51 H 0.079 0.921 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.568 4.399 7.089 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.192 4.192 4 C -0.048 4.048 5 N -0.242 5.242 6 C -0.202 4.202 7 C -0.183 4.183 8 N -0.127 5.127 9 C -0.041 4.041 10 C 0.283 3.717 11 O -0.455 6.455 12 N -0.329 5.329 13 C -0.014 4.014 14 C -0.153 4.153 15 C -0.082 4.082 16 C 0.041 3.959 17 N -0.368 5.368 18 C -0.356 4.356 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.801 3.199 23 H -0.216 1.216 24 H -0.223 1.223 25 H -0.193 1.193 26 C 0.006 3.994 27 C -0.127 4.127 28 C 0.004 3.996 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.198 0.802 37 H 0.215 0.785 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.097 0.903 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.459 5.444 7.391 25.191 hybrid contribution 2.550 -0.920 -0.594 2.775 sum -20.909 4.524 6.797 22.447 Atomic orbital electron populations 1.21733 0.91713 1.02564 1.02954 1.19667 0.97467 0.95366 0.90407 1.21697 0.99833 0.94832 1.02807 1.23584 0.96623 0.88705 0.95907 1.70116 1.25931 1.28031 1.00121 1.22609 1.02129 0.95047 1.00424 1.23088 1.07233 1.05376 0.82644 1.45056 1.37898 1.23170 1.06588 1.22077 0.94823 0.98234 0.89011 1.21236 0.86478 0.84133 0.79856 1.90770 1.68615 1.28885 1.57184 1.48147 1.24946 1.30767 1.29037 1.22126 0.96718 0.83509 0.99096 1.21822 0.93181 0.98270 1.02044 1.22088 0.95712 0.95705 0.94715 1.22189 0.93863 0.92563 0.87280 1.46351 1.08122 1.54819 1.27493 1.19385 0.89697 1.23056 1.03434 0.90146 1.25549 1.00501 1.00203 0.99987 1.70004 1.25531 1.35807 1.29048 0.85169 0.79433 0.76458 0.78856 1.21594 1.22288 1.19338 1.22796 0.85599 0.97515 0.93523 1.21331 0.97418 0.95098 0.98876 1.21406 0.83369 0.94886 0.99931 0.92977 0.89803 0.92092 0.88944 0.94912 0.89759 0.92875 0.80217 0.78550 0.82675 0.82443 0.85748 0.88927 0.88914 0.91099 0.95216 0.96429 0.94531 0.92848 0.93298 0.93127 0.92950 0.90302 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.18 71.98 0.66 -1.09 16 2 C -0.01 -0.15 3.25 -11.54 -0.04 -0.19 16 3 C -0.13 -2.60 9.18 71.98 0.66 -1.93 16 4 C 0.21 4.86 6.39 138.12 0.88 5.75 16 5 N -0.52 -14.08 11.25 -188.13 -2.12 -16.19 16 6 C -0.06 -1.29 11.87 83.52 0.99 -0.30 16 7 C -0.05 -1.01 11.58 83.09 0.96 -0.05 16 8 N -0.44 -8.59 2.24 -518.35 -1.16 -9.75 16 9 C 0.08 1.01 4.50 85.63 0.39 1.39 16 10 C 0.50 10.28 7.76 87.65 0.68 10.96 16 11 O -0.58 -18.15 15.80 -3.04 -0.05 -18.19 16 12 N -0.60 -11.42 2.94 -818.64 -2.41 -13.83 16 13 C 0.11 1.31 6.22 86.42 0.54 1.85 16 14 C -0.11 -2.22 5.26 30.60 0.16 -2.06 16 15 C -0.08 -2.51 0.77 -52.03 -0.04 -2.55 16 16 C 0.17 7.40 6.64 86.31 0.57 7.98 16 17 N -0.64 -31.15 3.53 -722.64 -2.55 -33.71 16 18 C -0.23 -12.47 10.70 84.03 0.90 -11.57 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 21 N -0.95 -57.44 11.39 21.65 0.25 -57.20 16 22 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.13 4.51 7.72 86.32 0.67 5.18 16 27 C -0.09 -2.83 5.21 30.58 0.16 -2.67 16 28 C 0.13 3.26 6.30 86.40 0.54 3.80 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 1.23 6.85 -2.39 -0.02 1.22 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.18 3.34 8.06 -2.91 -0.02 3.31 16 37 H 0.20 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.16 0.77 7.07 -2.39 -0.02 0.76 16 39 H 0.16 0.86 7.71 -2.39 -0.02 0.84 16 40 H 0.12 0.44 5.88 -2.38 -0.01 0.42 16 41 H 0.09 0.97 8.07 -2.39 -0.02 0.95 16 42 H 0.09 1.63 8.12 -2.39 -0.02 1.61 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.03 1.55 7.12 -2.39 -0.02 1.53 16 45 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 47 H 0.05 1.67 8.07 -2.38 -0.02 1.65 16 48 H 0.05 1.62 7.41 -2.39 -0.02 1.60 16 49 H 0.05 1.99 8.01 -2.39 -0.02 1.97 16 50 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 51 H 0.08 1.91 7.49 -2.39 -0.02 1.89 16 52 H 0.07 2.13 6.97 -2.39 -0.02 2.11 16 Total: -1.00 -81.87 410.33 4.03 -77.84 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.89 Total: 12.31 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 9.15 Total: 11.00 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -7.99 Total: -130.68 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.05 Total: -18.19 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -81.87 4.03 -77.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035806851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.650 kcal (2) G-P(sol) polarization free energy of solvation -81.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds