Wall clock time and date at job start Wed Apr 1 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46868 * 2 1 4 4 C 1.52990 * 109.47158 * 120.00241 * 2 1 3 5 5 C 1.50707 * 109.47338 * 175.00093 * 4 2 1 6 6 N 1.30859 * 125.41507 * 304.97860 * 5 4 2 7 7 C 1.33322 * 109.68435 * 179.78446 * 6 5 4 8 8 C 1.36667 * 107.78320 * 0.37527 * 7 6 5 9 9 C 1.46761 * 126.84027 * 179.89822 * 8 7 6 10 10 O 1.21681 * 120.00128 * 27.89462 * 9 8 7 11 11 N 1.34782 * 119.99787 * 207.88835 * 9 8 7 12 12 C 1.46597 * 119.68099 * 179.83247 * 11 9 8 13 13 C 1.53956 * 110.57299 * 227.84754 * 12 11 9 14 14 C 1.51525 * 107.34916 * 308.94705 * 13 12 11 15 15 H 1.09005 * 109.27795 * 306.30126 * 14 13 12 16 16 C 1.55363 * 107.78741 * 64.85594 * 14 13 12 17 17 H 1.08996 * 111.50841 * 50.62241 * 16 14 13 18 18 C 1.53746 * 100.21669 * 168.51804 * 16 14 13 19 19 C 1.55290 * 101.87262 * 320.88618 * 18 16 14 20 20 N 1.45460 * 116.86899 * 181.60873 * 14 13 12 21 21 C 1.36937 * 126.40747 * 30.87738 * 20 14 13 22 22 H 1.07995 * 119.99969 * 0.02562 * 21 20 14 23 23 C 1.38810 * 120.00202 * 179.97438 * 21 20 14 24 24 N 1.31619 * 119.99963 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00199 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46880 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47008 * 119.99993 * 25 23 21 28 28 H 1.48498 * 109.46993 * 239.99825 * 25 23 21 29 29 C 1.48912 * 119.82241 * 359.53877 * 11 9 8 30 30 N 1.34491 * 125.42056 * 124.99755 * 5 4 2 31 31 H 0.96998 * 126.47464 * 0.02562 * 30 5 4 32 32 H 1.08996 * 109.46876 * 299.99835 * 1 2 3 33 33 H 1.09004 * 109.47409 * 59.99710 * 1 2 3 34 34 H 1.09004 * 109.47318 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.46833 * 240.00402 * 2 1 3 36 36 H 1.08996 * 109.47238 * 60.00386 * 3 2 1 37 37 H 1.09005 * 109.46897 * 179.97438 * 3 2 1 38 38 H 1.08994 * 109.47338 * 299.99776 * 3 2 1 39 39 H 1.09000 * 109.47493 * 54.99796 * 4 2 1 40 40 H 1.08999 * 109.47688 * 294.99693 * 4 2 1 41 41 H 1.07997 * 126.10733 * 180.27743 * 7 6 5 42 42 H 1.08999 * 109.25508 * 107.56828 * 12 11 9 43 43 H 1.09000 * 109.25641 * 348.12758 * 12 11 9 44 44 H 1.08999 * 109.88099 * 189.49118 * 13 12 11 45 45 H 1.08999 * 109.94757 * 68.44050 * 13 12 11 46 46 H 1.08997 * 110.95310 * 79.04604 * 18 16 14 47 47 H 1.09000 * 110.95157 * 202.73418 * 18 16 14 48 48 H 1.09006 * 109.91526 * 141.84983 * 19 18 16 49 49 H 1.08995 * 109.92179 * 263.14347 * 19 18 16 50 50 H 0.96999 * 120.00500 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.91528 * 8.92467 * 29 11 9 52 52 H 1.08998 * 110.80589 * 246.96922 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.8294 1.1888 6 7 4.2252 -1.3602 0.2071 7 6 5.5289 -1.2866 0.4760 8 6 5.6703 -0.6849 1.6949 9 6 6.9285 -0.3971 2.3935 10 8 7.9493 -0.2127 1.7574 11 7 6.9533 -0.3370 3.7398 12 6 8.2146 -0.0527 4.4306 13 6 8.4386 -1.0514 5.5807 14 6 7.1771 -1.0644 6.4200 15 1 6.9328 -0.0448 6.7183 16 6 6.0275 -1.6285 5.5403 17 1 6.3111 -2.5683 5.0665 18 6 4.9464 -1.8469 6.6114 19 6 5.7836 -2.3774 7.8068 20 7 7.1783 -1.9212 7.5954 21 6 8.2647 -2.2464 8.3631 22 1 9.2392 -1.8535 8.1136 23 6 8.1131 -3.0801 9.4625 24 7 6.9254 -3.5586 9.7669 25 14 9.5950 -3.5231 10.5101 26 1 10.8052 -2.8606 9.9609 27 1 9.3701 -3.0647 11.9047 28 1 9.7873 -4.9955 10.4980 29 6 5.6997 -0.5530 4.5139 30 7 4.3933 -0.3961 2.1355 31 1 4.1555 0.0367 2.9704 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4426 0.0005 38 1 1.6767 1.9564 -0.8899 39 1 1.6054 -1.7198 1.2951 40 1 1.7517 -0.1584 2.1369 41 1 6.3301 -1.6408 -0.1557 42 1 8.1832 0.9593 4.8344 43 1 9.0385 -0.1307 3.7213 44 1 9.2851 -0.7326 6.1889 45 1 8.6258 -2.0467 5.1777 46 1 4.4547 -0.9080 6.8660 47 1 4.2187 -2.5898 6.2849 48 1 5.3966 -1.9702 8.7410 49 1 5.7483 -3.4666 7.8306 50 1 6.8195 -4.1415 10.5349 51 1 4.9079 -0.8990 3.8494 52 1 5.3929 0.3636 5.0176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036717242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:29 Heat of formation + Delta-G solvation = 54.113215 kcal Electronic energy + Delta-G solvation = -31488.413100 eV Core-core repulsion = 27489.631507 eV Total energy + Delta-G solvation = -3998.781593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 21.05 seconds Orbital eigenvalues (eV) -42.57718 -40.03773 -38.31432 -36.68485 -35.43752 -33.29223 -32.67779 -31.81788 -30.71507 -29.64132 -28.23896 -27.50574 -27.23084 -25.09559 -23.92595 -23.05962 -21.93190 -21.48326 -20.80946 -20.04421 -19.80778 -19.38148 -17.77262 -16.93434 -16.38010 -15.90963 -15.84159 -15.40348 -15.19801 -14.75891 -14.55758 -14.41806 -14.09160 -13.99791 -13.74004 -13.71214 -13.30642 -13.12402 -12.77050 -12.68837 -12.63656 -12.42311 -12.26629 -11.89226 -11.69842 -11.50200 -11.44400 -11.30005 -11.04430 -10.90772 -10.87250 -10.74768 -10.52249 -10.30069 -10.21761 -10.16091 -9.99958 -9.99553 -9.70141 -9.55170 -8.82472 -8.70418 -8.51524 -6.92592 -5.79069 -3.12480 1.21985 2.51406 2.67020 2.87050 3.25709 3.35401 3.41479 3.43432 4.02355 4.32787 4.40164 4.43140 4.55840 4.64728 4.73693 4.91107 4.99656 5.10395 5.14726 5.21083 5.26862 5.27989 5.31165 5.33393 5.38861 5.41669 5.49261 5.52234 5.61031 5.67008 5.68015 5.74750 5.78460 5.79052 5.93596 5.97435 6.03325 6.04597 6.12002 6.26052 6.31174 6.40498 6.47114 6.53240 6.70226 6.93918 6.95915 7.24116 7.45357 7.50898 7.72676 7.74800 8.04598 8.15878 9.11843 9.75294 10.41807 11.33660 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.002582 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.414738 B =10840.475262 C =11943.995543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.035 4.035 5 C 0.237 3.763 6 N -0.490 5.490 7 C 0.064 3.936 8 C -0.079 4.079 9 C 0.591 3.409 10 O -0.532 6.532 11 N -0.604 5.604 12 C 0.118 3.882 13 C -0.129 4.129 14 C 0.169 3.831 15 H 0.020 0.980 16 C -0.125 4.125 17 H 0.083 0.917 18 C -0.137 4.137 19 C 0.177 3.823 20 N -0.594 5.594 21 C -0.226 4.226 22 H 0.080 0.920 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.910 3.090 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.102 3.898 30 N -0.552 5.552 31 H 0.425 0.575 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.181 0.819 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.039 0.961 49 H 0.055 0.945 50 H 0.252 0.748 51 H 0.082 0.918 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 8.742 -16.408 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.074 4.074 5 C -0.026 4.026 6 N -0.210 5.210 7 C -0.090 4.090 8 C -0.195 4.195 9 C 0.379 3.621 10 O -0.409 6.409 11 N -0.336 5.336 12 C -0.005 4.005 13 C -0.169 4.169 14 C 0.061 3.939 15 H 0.038 0.962 16 C -0.145 4.145 17 H 0.102 0.898 18 C -0.176 4.176 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.354 4.354 22 H 0.098 0.902 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.020 4.020 30 N -0.162 5.162 31 H 0.269 0.731 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.198 0.802 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.099 0.901 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.014 8.384 -17.198 22.592 hybrid contribution 1.011 0.188 1.946 2.201 sum -11.003 8.573 -15.252 20.668 Atomic orbital electron populations 1.21844 0.94572 1.02070 1.02018 1.21062 0.95599 0.96227 0.97886 1.21865 1.01172 0.95788 1.01737 1.20249 0.84448 1.02918 0.99804 1.23389 0.94732 0.98083 0.86405 1.70124 1.03747 1.21432 1.25665 1.22587 0.93869 0.99373 0.93124 1.21093 0.84391 1.14275 0.99726 1.16982 0.86468 0.77013 0.81653 1.90827 1.33421 1.50612 1.66062 1.48513 1.10346 1.69775 1.04996 1.21687 0.85199 0.98532 0.95048 1.21912 1.00013 0.99283 0.95653 1.20639 0.92218 0.93835 0.87230 0.96248 1.22629 0.99151 0.97798 0.94934 0.89846 1.22747 0.97049 1.00441 0.97347 1.21544 0.82170 0.98645 0.92348 1.44233 1.04964 1.55083 1.27596 1.19047 0.87132 1.24110 1.05125 0.90245 1.24795 0.96915 0.99923 0.98763 1.69934 1.20627 1.37220 1.29151 0.86067 0.81690 0.77958 0.80199 1.20467 1.21755 1.21745 1.22417 0.85738 0.99555 0.94319 1.44035 1.06093 1.46697 1.19421 0.73113 0.92611 0.92335 0.92327 0.89528 0.92869 0.92828 0.92437 0.88574 0.90126 0.80179 0.91756 0.89043 0.90337 0.91304 0.92348 0.92064 0.94245 0.92628 0.93761 0.90054 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.19 37.16 0.34 -0.41 16 2 C -0.09 -0.59 2.89 -90.62 -0.26 -0.85 16 3 C -0.15 -1.03 9.01 37.16 0.33 -0.69 16 4 C -0.04 -0.24 5.32 -27.88 -0.15 -0.39 16 5 C 0.24 2.36 6.38 -155.61 -0.99 1.37 16 6 N -0.49 -6.07 11.09 -10.58 -0.12 -6.19 16 7 C 0.06 0.83 11.76 -17.47 -0.21 0.62 16 8 C -0.08 -1.02 6.37 -82.14 -0.52 -1.54 16 9 C 0.59 8.79 7.62 -12.81 -0.10 8.69 16 10 O -0.53 -9.41 16.34 5.21 0.09 -9.32 16 11 N -0.60 -8.40 3.01 -173.00 -0.52 -8.92 16 12 C 0.12 1.71 6.33 -3.49 -0.02 1.68 16 13 C -0.13 -2.22 5.45 -26.98 -0.15 -2.36 16 14 C 0.17 3.20 2.57 -67.98 -0.17 3.02 16 15 H 0.02 0.38 7.93 -51.93 -0.41 -0.03 16 16 C -0.12 -1.99 2.84 -89.37 -0.25 -2.24 16 17 H 0.08 1.50 8.12 -51.93 -0.42 1.07 16 18 C -0.14 -2.26 6.53 -25.13 -0.16 -2.42 16 19 C 0.18 4.03 5.45 -1.86 -0.01 4.02 16 20 N -0.59 -14.24 3.35 -163.02 -0.55 -14.79 16 21 C -0.23 -6.01 9.86 -15.06 -0.15 -6.16 16 22 H 0.08 2.05 7.18 -52.49 -0.38 1.67 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.36 10.44 55.49 0.58 -25.78 16 25 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 C 0.10 1.25 5.11 -3.10 -0.02 1.23 16 30 N -0.55 -5.46 4.79 -7.02 -0.03 -5.49 16 31 H 0.42 3.25 6.46 -40.82 -0.26 2.99 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.05 0.47 7.38 -51.93 -0.38 0.09 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.18 2.15 8.06 -52.49 -0.42 1.72 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.37 6.95 -51.93 -0.36 1.01 16 44 H 0.08 1.37 7.59 -51.93 -0.39 0.97 16 45 H 0.07 1.28 8.11 -51.93 -0.42 0.85 16 46 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 49 H 0.06 1.43 7.21 -51.93 -0.37 1.05 16 50 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.08 0.85 3.92 -51.93 -0.20 0.65 16 52 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -32.09 400.61 -10.76 -42.85 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.64 Total: 1.65 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.59 Total: 3.27 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.64 Total: -61.17 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.09 -10.76 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036717242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.968 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.06 seconds