Wall clock time and date at job start Wed Apr 1 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46868 * 2 1 4 4 C 1.52990 * 109.47158 * 120.00241 * 2 1 3 5 5 C 1.50707 * 109.47338 * 175.00093 * 4 2 1 6 6 N 1.30859 * 125.41507 * 304.97860 * 5 4 2 7 7 C 1.33322 * 109.68435 * 179.78446 * 6 5 4 8 8 C 1.36667 * 107.78320 * 0.37527 * 7 6 5 9 9 C 1.46761 * 126.84027 * 179.89822 * 8 7 6 10 10 O 1.21681 * 120.00128 * 27.89462 * 9 8 7 11 11 N 1.34782 * 119.99787 * 207.88835 * 9 8 7 12 12 C 1.46597 * 119.68099 * 179.83247 * 11 9 8 13 13 C 1.53956 * 110.57299 * 227.84754 * 12 11 9 14 14 C 1.51525 * 107.34916 * 308.94705 * 13 12 11 15 15 H 1.09005 * 109.27795 * 306.30126 * 14 13 12 16 16 C 1.55363 * 107.78741 * 64.85594 * 14 13 12 17 17 H 1.08996 * 111.50841 * 50.62241 * 16 14 13 18 18 C 1.53746 * 100.21669 * 168.51804 * 16 14 13 19 19 C 1.55290 * 101.87262 * 320.88618 * 18 16 14 20 20 N 1.45460 * 116.86899 * 181.60873 * 14 13 12 21 21 C 1.36937 * 126.40747 * 30.87738 * 20 14 13 22 22 H 1.07995 * 119.99969 * 0.02562 * 21 20 14 23 23 C 1.38810 * 120.00202 * 179.97438 * 21 20 14 24 24 N 1.31619 * 119.99963 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00199 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46880 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47008 * 119.99993 * 25 23 21 28 28 H 1.48498 * 109.46993 * 239.99825 * 25 23 21 29 29 C 1.48912 * 119.82241 * 359.53877 * 11 9 8 30 30 N 1.34491 * 125.42056 * 124.99755 * 5 4 2 31 31 H 0.96998 * 126.47464 * 0.02562 * 30 5 4 32 32 H 1.08996 * 109.46876 * 299.99835 * 1 2 3 33 33 H 1.09004 * 109.47409 * 59.99710 * 1 2 3 34 34 H 1.09004 * 109.47318 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.46833 * 240.00402 * 2 1 3 36 36 H 1.08996 * 109.47238 * 60.00386 * 3 2 1 37 37 H 1.09005 * 109.46897 * 179.97438 * 3 2 1 38 38 H 1.08994 * 109.47338 * 299.99776 * 3 2 1 39 39 H 1.09000 * 109.47493 * 54.99796 * 4 2 1 40 40 H 1.08999 * 109.47688 * 294.99693 * 4 2 1 41 41 H 1.07997 * 126.10733 * 180.27743 * 7 6 5 42 42 H 1.08999 * 109.25508 * 107.56828 * 12 11 9 43 43 H 1.09000 * 109.25641 * 348.12758 * 12 11 9 44 44 H 1.08999 * 109.88099 * 189.49118 * 13 12 11 45 45 H 1.08999 * 109.94757 * 68.44050 * 13 12 11 46 46 H 1.08997 * 110.95310 * 79.04604 * 18 16 14 47 47 H 1.09000 * 110.95157 * 202.73418 * 18 16 14 48 48 H 1.09006 * 109.91526 * 141.84983 * 19 18 16 49 49 H 1.08995 * 109.92179 * 263.14347 * 19 18 16 50 50 H 0.96999 * 120.00500 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.91528 * 8.92467 * 29 11 9 52 52 H 1.08998 * 110.80589 * 246.96922 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.8294 1.1888 6 7 4.2252 -1.3602 0.2071 7 6 5.5289 -1.2866 0.4760 8 6 5.6703 -0.6849 1.6949 9 6 6.9285 -0.3971 2.3935 10 8 7.9493 -0.2127 1.7574 11 7 6.9533 -0.3370 3.7398 12 6 8.2146 -0.0527 4.4306 13 6 8.4386 -1.0514 5.5807 14 6 7.1771 -1.0644 6.4200 15 1 6.9328 -0.0448 6.7183 16 6 6.0275 -1.6285 5.5403 17 1 6.3111 -2.5683 5.0665 18 6 4.9464 -1.8469 6.6114 19 6 5.7836 -2.3774 7.8068 20 7 7.1783 -1.9212 7.5954 21 6 8.2647 -2.2464 8.3631 22 1 9.2392 -1.8535 8.1136 23 6 8.1131 -3.0801 9.4625 24 7 6.9254 -3.5586 9.7669 25 14 9.5950 -3.5231 10.5101 26 1 10.8052 -2.8606 9.9609 27 1 9.3701 -3.0647 11.9047 28 1 9.7873 -4.9955 10.4980 29 6 5.6997 -0.5530 4.5139 30 7 4.3933 -0.3961 2.1355 31 1 4.1555 0.0367 2.9704 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 3.1300 1.4426 0.0005 38 1 1.6767 1.9564 -0.8899 39 1 1.6054 -1.7198 1.2951 40 1 1.7517 -0.1584 2.1369 41 1 6.3301 -1.6408 -0.1557 42 1 8.1832 0.9593 4.8344 43 1 9.0385 -0.1307 3.7213 44 1 9.2851 -0.7326 6.1889 45 1 8.6258 -2.0467 5.1777 46 1 4.4547 -0.9080 6.8660 47 1 4.2187 -2.5898 6.2849 48 1 5.3966 -1.9702 8.7410 49 1 5.7483 -3.4666 7.8306 50 1 6.8195 -4.1415 10.5349 51 1 4.9079 -0.8990 3.8494 52 1 5.3929 0.3636 5.0176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036717242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:42 Heat of formation + Delta-G solvation = 35.145748 kcal Electronic energy + Delta-G solvation = -31489.235591 eV Core-core repulsion = 27489.631507 eV Total energy + Delta-G solvation = -3999.604084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 24.13 seconds Orbital eigenvalues (eV) -43.46640 -41.27700 -39.68641 -37.21412 -36.85504 -34.46725 -34.32193 -33.03330 -31.73964 -31.14045 -29.67563 -28.09204 -27.90587 -26.71336 -25.33052 -24.33546 -22.96740 -22.45121 -21.88959 -21.45663 -21.08145 -20.21934 -18.86087 -18.53144 -17.58682 -17.09147 -16.89682 -16.76649 -16.24746 -16.03346 -15.79592 -15.47332 -15.22506 -14.95068 -14.86265 -14.76816 -14.51773 -14.40340 -14.16247 -13.80208 -13.41267 -13.32596 -13.21681 -13.13978 -13.02476 -12.76064 -12.72809 -12.54309 -12.16693 -12.01684 -11.97224 -11.86165 -11.77950 -11.65083 -11.59330 -11.51098 -11.42285 -11.25140 -11.04967 -10.86453 -10.73348 -9.96143 -9.47475 -8.88593 -7.86158 -5.19602 0.26409 1.43784 1.44646 1.54041 1.61567 1.62322 1.94504 2.23928 2.48309 3.22251 3.32808 3.37222 3.45174 3.68346 3.82092 3.89827 3.94624 4.07160 4.09729 4.11265 4.17839 4.26283 4.33837 4.36800 4.43654 4.46179 4.60090 4.61952 4.70532 4.75362 4.79381 4.84022 4.85540 4.89698 4.95672 4.98195 5.07321 5.07512 5.13597 5.14695 5.34807 5.37734 5.42829 5.48026 5.51097 5.51964 5.58527 5.66021 5.77055 6.11360 6.19905 6.23875 6.86286 6.92790 7.08858 7.78451 8.45121 9.25478 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.002582 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.414738 B =10840.475262 C =11943.995543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.037 4.037 5 C 0.254 3.746 6 N -0.516 5.516 7 C 0.054 3.946 8 C -0.093 4.093 9 C 0.593 3.407 10 O -0.567 6.567 11 N -0.603 5.603 12 C 0.127 3.873 13 C -0.121 4.121 14 C 0.157 3.843 15 H 0.031 0.969 16 C -0.109 4.109 17 H 0.060 0.940 18 C -0.117 4.117 19 C 0.179 3.821 20 N -0.617 5.617 21 C -0.228 4.228 22 H 0.082 0.918 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.970 3.030 26 H -0.266 1.266 27 H -0.293 1.293 28 H -0.296 1.296 29 C 0.112 3.888 30 N -0.541 5.541 31 H 0.437 0.563 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.180 0.820 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.006 0.994 49 H 0.014 0.986 50 H 0.245 0.755 51 H 0.104 0.896 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 10.524 -17.228 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.076 4.076 5 C -0.010 4.010 6 N -0.236 5.236 7 C -0.100 4.100 8 C -0.209 4.209 9 C 0.382 3.618 10 O -0.447 6.447 11 N -0.335 5.335 12 C 0.004 3.996 13 C -0.161 4.161 14 C 0.050 3.950 15 H 0.049 0.951 16 C -0.130 4.130 17 H 0.079 0.921 18 C -0.156 4.156 19 C 0.054 3.946 20 N -0.341 5.341 21 C -0.358 4.358 22 H 0.100 0.900 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.799 3.201 26 H -0.191 1.191 27 H -0.220 1.220 28 H -0.223 1.223 29 C -0.010 4.010 30 N -0.152 5.152 31 H 0.284 0.716 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.197 0.803 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.025 0.975 49 H 0.032 0.968 50 H 0.054 0.946 51 H 0.122 0.878 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.011 10.200 -18.028 25.007 hybrid contribution 1.600 -0.362 2.140 2.697 sum -12.410 9.838 -15.888 22.433 Atomic orbital electron populations 1.21807 0.93090 1.02553 1.02635 1.21006 0.96713 0.95691 0.97061 1.21850 0.99659 0.96248 1.02581 1.20501 0.81923 1.04109 1.01045 1.24026 0.95931 0.95755 0.85284 1.70148 1.03569 1.22846 1.27012 1.22738 0.94433 0.99444 0.93371 1.20736 0.84720 1.15592 0.99840 1.17174 0.86680 0.76242 0.81686 1.90807 1.34868 1.52219 1.66773 1.48536 1.10658 1.69396 1.04914 1.21548 0.85658 0.98544 0.93813 1.21795 0.99109 0.98952 0.96201 1.20905 0.94356 0.93415 0.86320 0.95134 1.22451 0.97499 0.97923 0.95121 0.92145 1.22599 0.96524 1.02229 0.94222 1.21356 0.82912 0.96274 0.94038 1.44519 1.04836 1.55717 1.29027 1.19390 0.88235 1.23083 1.05055 0.89974 1.25557 0.99276 1.00798 1.00426 1.70143 1.22300 1.38174 1.29471 0.85121 0.79387 0.77133 0.78425 1.19087 1.22001 1.22342 1.22516 0.85441 0.99521 0.93528 1.43901 1.04871 1.46525 1.19928 0.71582 0.91431 0.92319 0.91937 0.91550 0.91385 0.95020 0.92333 0.87514 0.87176 0.80318 0.89594 0.89613 0.91052 0.93509 0.89232 0.89876 0.97532 0.96769 0.94566 0.87812 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.19 71.98 0.66 -0.36 16 2 C -0.09 -0.91 2.89 -10.80 -0.03 -0.94 16 3 C -0.15 -1.67 9.01 71.98 0.65 -1.02 16 4 C -0.04 -0.36 5.32 29.85 0.16 -0.20 16 5 C 0.25 4.36 6.38 138.20 0.88 5.24 16 6 N -0.52 -12.06 11.09 -187.39 -2.08 -14.14 16 7 C 0.05 1.36 11.76 84.10 0.99 2.34 16 8 C -0.09 -2.22 6.37 40.01 0.26 -1.97 16 9 C 0.59 16.76 7.62 86.47 0.66 17.42 16 10 O -0.57 -19.82 16.34 -4.29 -0.07 -19.89 16 11 N -0.60 -15.38 3.01 -819.48 -2.47 -17.85 16 12 C 0.13 3.47 6.33 86.68 0.55 4.02 16 13 C -0.12 -4.09 5.45 30.43 0.17 -3.93 16 14 C 0.16 5.75 2.57 45.52 0.12 5.86 16 15 H 0.03 1.10 7.93 -2.38 -0.02 1.08 16 16 C -0.11 -3.25 2.84 -9.98 -0.03 -3.28 16 17 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 18 C -0.12 -3.57 6.53 31.63 0.21 -3.36 16 19 C 0.18 8.27 5.45 86.83 0.47 8.74 16 20 N -0.62 -29.86 3.35 -669.67 -2.24 -32.10 16 21 C -0.23 -12.37 9.86 84.03 0.83 -11.54 16 22 H 0.08 4.28 7.18 -2.91 -0.02 4.26 16 23 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 24 N -0.95 -56.43 10.44 21.65 0.23 -56.20 16 25 Si 0.97 45.58 29.55 68.60 2.03 47.60 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 29 C 0.11 2.29 5.11 85.66 0.44 2.73 16 30 N -0.54 -8.93 4.79 -176.11 -0.84 -9.77 16 31 H 0.44 4.65 6.46 -92.71 -0.60 4.05 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.07 0.99 8.06 -2.38 -0.02 0.97 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 37 H 0.03 0.50 7.38 -2.38 -0.02 0.48 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.18 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.09 2.49 6.95 -2.39 -0.02 2.48 16 44 H 0.07 2.48 7.59 -2.39 -0.02 2.46 16 45 H 0.05 1.76 8.11 -2.39 -0.02 1.74 16 46 H 0.09 2.23 8.11 -2.39 -0.02 2.21 16 47 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.01 0.33 7.77 -2.38 -0.02 0.32 16 49 H 0.01 0.75 7.21 -2.39 -0.02 0.73 16 50 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 51 H 0.10 1.71 3.92 -2.39 -0.01 1.70 16 52 H 0.11 1.69 8.08 -2.39 -0.02 1.67 16 Total: -1.00 -73.89 400.61 2.30 -71.59 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.32 Total: 14.36 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 7.44 Total: 16.40 kcal Atomic # 7 Polarization: -122.66 SS G_CDS: -7.41 Total: -130.07 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.07 Total: -19.89 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.89 2.30 -71.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036717242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.735 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.13 seconds