Wall clock time and date at job start Wed Apr 1 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47124 * 2 1 4 4 C 1.53001 * 109.47591 * 239.99841 * 2 1 3 5 5 C 1.50700 * 109.46993 * 119.99410 * 2 1 3 6 6 C 1.39673 * 126.06838 * 75.00313 * 5 2 1 7 7 C 1.38400 * 105.36100 * 179.97438 * 6 5 2 8 8 C 1.47171 * 126.88494 * 180.02562 * 7 6 5 9 9 O 1.21624 * 119.99744 * 0.27483 * 8 7 6 10 10 N 1.34773 * 119.99616 * 180.27616 * 8 7 6 11 11 C 1.44217 * 115.76781 * 354.87283 * 10 8 7 12 12 C 1.51859 * 112.75100 * 186.23305 * 11 10 8 13 13 C 1.50995 * 111.88485 * 324.22216 * 12 11 10 14 14 H 1.09003 * 108.31914 * 180.27399 * 13 12 11 15 15 C 1.53974 * 111.97245 * 60.08287 * 13 12 11 16 16 H 1.09007 * 112.41926 * 75.68589 * 15 13 12 17 17 C 1.56267 * 99.75631 * 195.21656 * 15 13 12 18 18 C 1.54648 * 102.20288 * 38.87721 * 17 15 13 19 19 N 1.46658 * 113.21136 * 301.26888 * 13 12 11 20 20 C 1.36934 * 126.20243 * 330.12406 * 19 13 12 21 21 H 1.08002 * 119.99827 * 0.02562 * 20 19 13 22 22 C 1.38812 * 120.00282 * 180.02562 * 20 19 13 23 23 N 1.31610 * 119.99907 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99934 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47300 * 60.00688 * 24 22 20 26 26 H 1.48502 * 109.47189 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47675 * 300.00249 * 24 22 20 28 28 C 1.43528 * 115.76035 * 174.90183 * 10 8 7 29 29 N 1.36599 * 106.23092 * 0.25779 * 7 6 5 30 30 H 0.97007 * 125.19252 * 179.73709 * 29 7 6 31 31 N 1.28445 * 109.61843 * 359.55631 * 29 7 6 32 32 H 1.08997 * 109.47260 * 300.00620 * 1 2 3 33 33 H 1.09004 * 109.46710 * 60.00533 * 1 2 3 34 34 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47071 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46892 * 299.99355 * 3 2 1 37 37 H 1.08997 * 109.47558 * 59.99562 * 3 2 1 38 38 H 1.09003 * 109.46872 * 299.99848 * 4 2 1 39 39 H 1.09000 * 109.47273 * 59.99573 * 4 2 1 40 40 H 1.09002 * 109.47495 * 180.02562 * 4 2 1 41 41 H 1.08004 * 127.32087 * 359.94385 * 6 5 2 42 42 H 1.09007 * 108.82429 * 65.39393 * 11 10 8 43 43 H 1.08998 * 108.82921 * 307.08335 * 11 10 8 44 44 H 1.09006 * 109.00035 * 203.60625 * 12 11 10 45 45 H 1.08996 * 108.93466 * 84.79848 * 12 11 10 46 46 H 1.08999 * 110.85973 * 157.05485 * 17 15 13 47 47 H 1.09002 * 110.86143 * 280.69926 * 17 15 13 48 48 H 1.09001 * 109.96588 * 95.29265 * 18 17 15 49 49 H 1.08997 * 109.96798 * 216.50415 * 18 17 15 50 50 H 0.97001 * 120.00310 * 179.97438 * 23 22 20 51 51 H 1.09005 * 108.16405 * 58.82824 * 28 10 8 52 52 H 1.09001 * 108.16480 * 302.24604 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 2.0309 -2.0910 1.4412 7 6 2.5823 -2.2708 2.6978 8 6 2.8048 -3.5503 3.3901 9 8 2.4960 -4.5955 2.8502 10 7 3.3505 -3.5637 4.6223 11 6 3.7870 -2.2858 5.1286 12 6 4.5247 -2.3990 6.4511 13 6 3.9480 -3.4861 7.3261 14 1 4.5145 -3.5134 8.2569 15 6 4.0244 -4.8688 6.6528 16 1 5.0320 -5.2845 6.6702 17 6 3.0317 -5.6616 7.5627 18 6 1.9193 -4.6184 7.8194 19 7 2.5287 -3.2859 7.6368 20 6 1.8854 -2.0815 7.7397 21 1 2.4317 -1.1626 7.5856 22 6 0.5312 -2.0415 8.0419 23 7 -0.1344 -3.1612 8.2301 24 14 -0.3465 -0.3984 8.1815 25 1 -0.2456 0.3280 6.8902 26 1 -1.7763 -0.6273 8.5107 27 1 0.2847 0.4105 9.2550 28 6 3.4220 -4.8481 5.2589 29 7 2.8740 -1.0222 3.1689 30 1 3.2697 -0.8291 4.0333 31 7 2.5477 -0.1430 2.2912 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9565 0.8899 38 1 1.6768 -1.7490 -1.2491 39 1 1.6767 -0.2075 -2.1392 40 1 3.1301 -0.7217 -1.2489 41 1 1.6747 -2.8559 0.7670 42 1 2.9155 -1.6455 5.2657 43 1 4.4482 -1.8241 4.3953 44 1 4.4576 -1.4469 6.9776 45 1 5.5732 -2.6217 6.2533 46 1 2.6348 -6.5311 7.0386 47 1 3.5112 -5.9555 8.4964 48 1 1.1070 -4.7572 7.1060 49 1 1.5419 -4.7195 8.8370 50 1 -1.0806 -3.1333 8.4417 51 1 4.0115 -5.5097 4.6240 52 1 2.4123 -5.2543 5.3189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036756223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:08 Heat of formation + Delta-G solvation = 86.485356 kcal Electronic energy + Delta-G solvation = -32716.097699 eV Core-core repulsion = 28718.719868 eV Total energy + Delta-G solvation = -3997.377831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.62508 -40.29045 -38.20878 -36.98512 -35.38258 -33.14877 -32.07041 -30.92150 -30.86744 -29.45179 -27.87671 -27.30876 -27.25478 -25.55970 -24.28059 -23.39901 -22.33860 -22.16375 -20.51716 -20.11206 -18.84660 -18.47513 -17.24369 -16.51144 -16.35387 -15.92656 -15.88667 -15.27724 -14.83288 -14.74482 -14.34224 -14.17480 -13.98681 -13.82424 -13.75985 -13.42242 -13.26997 -12.91506 -12.66151 -12.34245 -12.20416 -12.16961 -11.74918 -11.68623 -11.57923 -11.36525 -11.29665 -11.14978 -11.07744 -11.02491 -10.90239 -10.81329 -10.47282 -10.29517 -10.08730 -9.96809 -9.84358 -9.77919 -9.64889 -9.00615 -8.96547 -8.70278 -8.26135 -6.93648 -5.81288 -3.14764 1.46042 2.67937 2.93196 3.28607 3.32054 3.36486 3.39225 3.43246 4.37048 4.38490 4.56069 4.75872 4.81340 4.94625 4.96935 5.04616 5.18036 5.22304 5.27286 5.34658 5.42801 5.47150 5.57640 5.58025 5.59056 5.64714 5.73886 5.77845 5.83051 5.85589 5.89683 5.96431 5.99739 6.03890 6.09989 6.11513 6.21115 6.21720 6.28759 6.32829 6.35996 6.53972 6.58987 6.60800 6.74263 6.91785 7.10048 7.42158 7.48356 7.53251 7.72143 8.13018 8.13971 8.31940 9.09027 9.71872 10.39585 11.30558 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.004082 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.958795 B = 6857.426290 C = 8293.244434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 C -0.134 4.134 4 C -0.138 4.138 5 C 0.033 3.967 6 C -0.155 4.155 7 C -0.027 4.027 8 C 0.577 3.423 9 O -0.529 6.529 10 N -0.568 5.568 11 C 0.107 3.893 12 C -0.123 4.123 13 C 0.169 3.831 14 H 0.029 0.971 15 C -0.113 4.113 16 H 0.084 0.916 17 C -0.142 4.142 18 C 0.176 3.824 19 N -0.591 5.591 20 C -0.232 4.232 21 H 0.075 0.925 22 C 0.000 4.000 23 N -0.914 5.914 24 Si 0.904 3.096 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.145 3.855 29 N -0.383 5.383 30 H 0.449 0.551 31 N -0.273 5.273 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.159 0.841 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.043 0.957 50 H 0.254 0.746 51 H 0.055 0.945 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 2.826 -12.488 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 C -0.192 4.192 4 C -0.196 4.196 5 C -0.125 4.125 6 C -0.184 4.184 7 C -0.155 4.155 8 C 0.363 3.637 9 O -0.405 6.405 10 N -0.298 5.298 11 C -0.017 4.017 12 C -0.162 4.162 13 C 0.061 3.939 14 H 0.046 0.954 15 C -0.133 4.133 16 H 0.102 0.898 17 C -0.181 4.181 18 C 0.052 3.948 19 N -0.317 5.317 20 C -0.360 4.360 21 H 0.093 0.907 22 C -0.198 4.198 23 N -0.560 5.560 24 Si 0.734 3.266 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.211 1.211 28 C 0.023 3.977 29 N -0.110 5.110 30 H 0.307 0.693 31 N -0.106 5.106 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.177 0.823 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.073 0.927 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.204 3.340 -12.125 15.016 hybrid contribution -0.621 0.244 0.502 0.836 sum 7.582 3.584 -11.623 14.332 Atomic orbital electron populations 1.21875 0.93439 1.02397 1.01951 1.18869 0.95341 0.94711 0.89464 1.21761 1.01178 0.94434 1.01785 1.21871 1.01257 1.00516 0.95923 1.21823 1.03515 0.91554 0.95585 1.21881 1.04593 0.96424 0.95481 1.21715 1.09686 0.86793 0.97308 1.17170 0.78368 0.86827 0.81311 1.90783 1.51644 1.31864 1.66213 1.46148 1.59593 1.08261 1.15834 1.21076 0.98667 0.85314 0.96611 1.21257 0.98354 1.02237 0.94382 1.20238 0.88448 0.90844 0.94369 0.95358 1.22460 0.98506 0.98797 0.93579 0.89764 1.23335 0.97920 0.98610 0.98221 1.21315 0.91564 0.81584 1.00345 1.44338 1.02617 1.02538 1.82233 1.18802 0.91435 0.83459 1.42347 0.90680 1.24751 0.96564 0.96814 1.01645 1.69920 1.08469 1.24329 1.53324 0.86340 0.79180 0.83188 0.77905 1.21219 1.21488 1.21077 1.20368 1.01997 0.82236 0.93135 1.45337 1.45919 1.02868 1.16827 0.69343 1.73022 1.16788 1.20663 1.00152 0.92382 0.92102 0.92179 0.92571 0.92645 0.91967 0.92098 0.92082 0.92481 0.82320 0.90499 0.92690 0.90031 0.91716 0.91781 0.92092 0.93499 0.93880 0.93597 0.92666 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.46 37.16 0.31 -1.16 16 2 C 0.02 0.20 0.96 -155.66 -0.15 0.05 16 3 C -0.13 -1.39 8.04 37.16 0.30 -1.10 16 4 C -0.14 -1.29 8.20 37.16 0.30 -0.98 16 5 C 0.03 0.48 5.65 -82.47 -0.47 0.01 16 6 C -0.15 -2.40 10.12 -38.99 -0.39 -2.79 16 7 C -0.03 -0.45 6.70 -82.06 -0.55 -1.00 16 8 C 0.58 10.73 7.49 -12.64 -0.09 10.63 16 9 O -0.53 -11.00 16.50 5.26 0.09 -10.91 16 10 N -0.57 -9.92 3.19 -180.55 -0.58 -10.49 16 11 C 0.11 1.66 3.77 -5.84 -0.02 1.64 16 12 C -0.12 -1.86 5.10 -28.32 -0.14 -2.00 16 13 C 0.17 3.05 2.93 -68.34 -0.20 2.85 16 14 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 15 C -0.11 -1.82 3.80 -88.93 -0.34 -2.16 16 16 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 17 C -0.14 -2.47 6.14 -24.11 -0.15 -2.62 16 18 C 0.18 4.03 4.82 -2.54 -0.01 4.02 16 19 N -0.59 -13.48 3.04 -164.17 -0.50 -13.98 16 20 C -0.23 -5.86 8.84 -15.06 -0.13 -5.99 16 21 H 0.08 1.79 6.89 -52.49 -0.36 1.42 16 22 C 0.00 -0.01 5.49 -17.43 -0.10 -0.10 16 23 N -0.91 -25.98 10.41 55.49 0.58 -25.41 16 24 Si 0.90 21.50 29.55 -169.99 -5.02 16.48 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.14 2.52 4.61 -6.19 -0.03 2.49 16 29 N -0.38 -5.97 5.85 33.48 0.20 -5.78 16 30 H 0.45 6.38 4.31 -190.45 -0.82 5.56 16 31 N -0.27 -4.26 11.48 33.64 0.39 -3.87 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.06 0.56 7.60 -51.93 -0.39 0.17 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.16 2.26 7.79 -52.48 -0.41 1.85 16 42 H 0.08 1.35 5.77 -51.93 -0.30 1.05 16 43 H 0.06 0.71 6.38 -51.93 -0.33 0.38 16 44 H 0.08 1.22 7.36 -51.93 -0.38 0.84 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.03 7.81 -51.93 -0.41 0.63 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.05 1.23 7.13 -51.93 -0.37 0.86 16 49 H 0.04 1.10 7.58 -51.93 -0.39 0.71 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 51 H 0.06 0.90 7.98 -51.93 -0.41 0.48 16 52 H 0.07 1.42 6.63 -51.93 -0.34 1.08 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -30.80 391.66 -9.94 -40.74 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -9.13 Total: 5.53 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.86 Total: 1.79 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.08 Total: -59.53 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.80 -9.94 -40.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036756223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.227 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds