Wall clock time and date at job start Wed Apr 1 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47124 * 2 1 4 4 C 1.53001 * 109.47591 * 239.99841 * 2 1 3 5 5 C 1.50700 * 109.46993 * 119.99410 * 2 1 3 6 6 C 1.39673 * 126.06838 * 75.00313 * 5 2 1 7 7 C 1.38400 * 105.36100 * 179.97438 * 6 5 2 8 8 C 1.47171 * 126.88494 * 180.02562 * 7 6 5 9 9 O 1.21624 * 119.99744 * 0.27483 * 8 7 6 10 10 N 1.34773 * 119.99616 * 180.27616 * 8 7 6 11 11 C 1.44217 * 115.76781 * 354.87283 * 10 8 7 12 12 C 1.51859 * 112.75100 * 186.23305 * 11 10 8 13 13 C 1.50995 * 111.88485 * 324.22216 * 12 11 10 14 14 H 1.09003 * 108.31914 * 180.27399 * 13 12 11 15 15 C 1.53974 * 111.97245 * 60.08287 * 13 12 11 16 16 H 1.09007 * 112.41926 * 75.68589 * 15 13 12 17 17 C 1.56267 * 99.75631 * 195.21656 * 15 13 12 18 18 C 1.54648 * 102.20288 * 38.87721 * 17 15 13 19 19 N 1.46658 * 113.21136 * 301.26888 * 13 12 11 20 20 C 1.36934 * 126.20243 * 330.12406 * 19 13 12 21 21 H 1.08002 * 119.99827 * 0.02562 * 20 19 13 22 22 C 1.38812 * 120.00282 * 180.02562 * 20 19 13 23 23 N 1.31610 * 119.99907 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99934 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47300 * 60.00688 * 24 22 20 26 26 H 1.48502 * 109.47189 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47675 * 300.00249 * 24 22 20 28 28 C 1.43528 * 115.76035 * 174.90183 * 10 8 7 29 29 N 1.36599 * 106.23092 * 0.25779 * 7 6 5 30 30 H 0.97007 * 125.19252 * 179.73709 * 29 7 6 31 31 N 1.28445 * 109.61843 * 359.55631 * 29 7 6 32 32 H 1.08997 * 109.47260 * 300.00620 * 1 2 3 33 33 H 1.09004 * 109.46710 * 60.00533 * 1 2 3 34 34 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47071 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46892 * 299.99355 * 3 2 1 37 37 H 1.08997 * 109.47558 * 59.99562 * 3 2 1 38 38 H 1.09003 * 109.46872 * 299.99848 * 4 2 1 39 39 H 1.09000 * 109.47273 * 59.99573 * 4 2 1 40 40 H 1.09002 * 109.47495 * 180.02562 * 4 2 1 41 41 H 1.08004 * 127.32087 * 359.94385 * 6 5 2 42 42 H 1.09007 * 108.82429 * 65.39393 * 11 10 8 43 43 H 1.08998 * 108.82921 * 307.08335 * 11 10 8 44 44 H 1.09006 * 109.00035 * 203.60625 * 12 11 10 45 45 H 1.08996 * 108.93466 * 84.79848 * 12 11 10 46 46 H 1.08999 * 110.85973 * 157.05485 * 17 15 13 47 47 H 1.09002 * 110.86143 * 280.69926 * 17 15 13 48 48 H 1.09001 * 109.96588 * 95.29265 * 18 17 15 49 49 H 1.08997 * 109.96798 * 216.50415 * 18 17 15 50 50 H 0.97001 * 120.00310 * 179.97438 * 23 22 20 51 51 H 1.09005 * 108.16405 * 58.82824 * 28 10 8 52 52 H 1.09001 * 108.16480 * 302.24604 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 2.0309 -2.0910 1.4412 7 6 2.5823 -2.2708 2.6978 8 6 2.8048 -3.5503 3.3901 9 8 2.4960 -4.5955 2.8502 10 7 3.3505 -3.5637 4.6223 11 6 3.7870 -2.2858 5.1286 12 6 4.5247 -2.3990 6.4511 13 6 3.9480 -3.4861 7.3261 14 1 4.5145 -3.5134 8.2569 15 6 4.0244 -4.8688 6.6528 16 1 5.0320 -5.2845 6.6702 17 6 3.0317 -5.6616 7.5627 18 6 1.9193 -4.6184 7.8194 19 7 2.5287 -3.2859 7.6368 20 6 1.8854 -2.0815 7.7397 21 1 2.4317 -1.1626 7.5856 22 6 0.5312 -2.0415 8.0419 23 7 -0.1344 -3.1612 8.2301 24 14 -0.3465 -0.3984 8.1815 25 1 -0.2456 0.3280 6.8902 26 1 -1.7763 -0.6273 8.5107 27 1 0.2847 0.4105 9.2550 28 6 3.4220 -4.8481 5.2589 29 7 2.8740 -1.0222 3.1689 30 1 3.2697 -0.8291 4.0333 31 7 2.5477 -0.1430 2.2912 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9565 0.8899 38 1 1.6768 -1.7490 -1.2491 39 1 1.6767 -0.2075 -2.1392 40 1 3.1301 -0.7217 -1.2489 41 1 1.6747 -2.8559 0.7670 42 1 2.9155 -1.6455 5.2657 43 1 4.4482 -1.8241 4.3953 44 1 4.4576 -1.4469 6.9776 45 1 5.5732 -2.6217 6.2533 46 1 2.6348 -6.5311 7.0386 47 1 3.5112 -5.9555 8.4964 48 1 1.1070 -4.7572 7.1060 49 1 1.5419 -4.7195 8.8370 50 1 -1.0806 -3.1333 8.4417 51 1 4.0115 -5.5097 4.6240 52 1 2.4123 -5.2543 5.3189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036756223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:06 Heat of formation + Delta-G solvation = 68.123019 kcal Electronic energy + Delta-G solvation = -32716.893950 eV Core-core repulsion = 28718.719868 eV Total energy + Delta-G solvation = -3998.174082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -43.84952 -41.68529 -39.71920 -37.92863 -36.84730 -34.86411 -33.58073 -32.21549 -32.11875 -31.12457 -29.36136 -28.14075 -28.07277 -27.12635 -25.93232 -24.71530 -23.58871 -23.44007 -21.96461 -21.66064 -19.92449 -19.91467 -18.77463 -18.06482 -17.69844 -17.38871 -17.16060 -16.70436 -16.43711 -15.92758 -15.82274 -15.49418 -15.29629 -14.93326 -14.80366 -14.75156 -14.52210 -14.33252 -14.16692 -13.88238 -13.27435 -13.10875 -13.08984 -13.06656 -12.93684 -12.77836 -12.52115 -12.50048 -12.43308 -12.31934 -12.12191 -11.99519 -11.87943 -11.63218 -11.60353 -11.48276 -11.44426 -11.29359 -11.13557 -10.70180 -10.26857 -10.15997 -9.63881 -8.85816 -7.84583 -5.16306 0.13536 1.40091 1.40814 1.46423 1.49944 1.65524 2.01179 2.06628 2.45495 3.16795 3.34013 3.44351 3.46599 3.67877 3.75032 3.81366 3.85177 3.92363 4.04321 4.13537 4.19074 4.23297 4.33983 4.43264 4.50881 4.52578 4.65738 4.67652 4.75092 4.79380 4.84127 4.87246 4.89664 4.95611 4.98948 5.07738 5.07770 5.13674 5.16357 5.22318 5.26534 5.34191 5.47322 5.49371 5.50430 5.51025 5.57397 5.66823 5.77469 5.91308 6.11364 6.19129 6.84523 6.98314 7.08873 7.79923 8.47412 9.26896 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.004082 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.958795 B = 6857.426290 C = 8293.244434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.134 4.134 5 C 0.036 3.964 6 C -0.158 4.158 7 C -0.046 4.046 8 C 0.571 3.429 9 O -0.561 6.561 10 N -0.568 5.568 11 C 0.106 3.894 12 C -0.120 4.120 13 C 0.157 3.843 14 H 0.040 0.960 15 C -0.096 4.096 16 H 0.132 0.868 17 C -0.130 4.130 18 C 0.184 3.816 19 N -0.607 5.607 20 C -0.215 4.215 21 H 0.091 0.909 22 C -0.066 4.066 23 N -0.950 5.950 24 Si 0.957 3.043 25 H -0.284 1.284 26 H -0.304 1.304 27 H -0.273 1.273 28 C 0.146 3.854 29 N -0.380 5.380 30 H 0.453 0.547 31 N -0.283 5.283 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.167 0.833 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.082 0.918 48 H -0.001 1.001 49 H 0.003 0.997 50 H 0.240 0.760 51 H 0.072 0.928 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.148 3.983 -13.997 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 C -0.188 4.188 4 C -0.192 4.192 5 C -0.122 4.122 6 C -0.187 4.187 7 C -0.175 4.175 8 C 0.359 3.641 9 O -0.439 6.439 10 N -0.298 5.298 11 C -0.018 4.018 12 C -0.158 4.158 13 C 0.051 3.949 14 H 0.058 0.942 15 C -0.115 4.115 16 H 0.149 0.851 17 C -0.168 4.168 18 C 0.059 3.941 19 N -0.332 5.332 20 C -0.344 4.344 21 H 0.109 0.891 22 C -0.259 4.259 23 N -0.600 5.600 24 Si 0.787 3.213 25 H -0.211 1.211 26 H -0.231 1.231 27 H -0.199 1.199 28 C 0.023 3.977 29 N -0.108 5.108 30 H 0.311 0.689 31 N -0.116 5.116 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.185 0.815 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.125 0.875 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.018 0.982 49 H 0.022 0.978 50 H 0.050 0.950 51 H 0.090 0.910 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.124 4.531 -13.619 18.159 hybrid contribution -1.482 -0.106 0.944 1.760 sum 9.642 4.425 -12.675 16.529 Atomic orbital electron populations 1.21880 0.92981 1.02255 1.02426 1.19083 0.95664 0.95181 0.88811 1.21737 1.00948 0.93819 1.02271 1.21859 1.01116 1.00520 0.95716 1.22394 1.02379 0.91247 0.96181 1.22143 1.04036 0.97342 0.95222 1.21647 1.11169 0.86677 0.97972 1.17444 0.77998 0.87040 0.81637 1.90752 1.53054 1.32996 1.67108 1.46250 1.59170 1.08939 1.15396 1.21200 0.98399 0.84127 0.98053 1.21277 1.00249 1.01234 0.93085 1.20555 0.85571 0.93165 0.95652 0.94236 1.22517 1.00103 0.97245 0.91672 0.85051 1.23205 0.96439 0.97330 0.99858 1.21006 0.92570 0.83870 0.96629 1.44573 1.04962 1.01712 1.81996 1.19245 0.91357 0.85066 1.38772 0.89115 1.25450 0.97873 0.99092 1.03471 1.70154 1.07724 1.26001 1.56143 0.85461 0.77419 0.80419 0.77965 1.21071 1.23109 1.19875 1.20365 1.00311 0.82540 0.94485 1.45321 1.46038 1.02344 1.17062 0.68864 1.73034 1.17203 1.20768 1.00556 0.94083 0.89449 0.92662 0.92878 0.90184 0.93462 0.92228 0.89723 0.92698 0.81530 0.92999 0.89446 0.89714 0.87527 0.90763 0.89966 0.98246 0.97835 0.95042 0.91008 0.94879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.46 71.98 0.61 -2.09 16 2 C 0.01 0.30 0.96 -52.93 -0.05 0.25 16 3 C -0.13 -2.44 8.04 71.98 0.58 -1.86 16 4 C -0.13 -2.18 8.20 71.98 0.59 -1.59 16 5 C 0.04 1.00 5.65 43.05 0.24 1.24 16 6 C -0.16 -4.85 10.12 22.66 0.23 -4.62 16 7 C -0.05 -1.56 6.70 40.79 0.27 -1.28 16 8 C 0.57 21.27 7.49 86.59 0.65 21.92 16 9 O -0.56 -23.69 16.50 -4.11 -0.07 -23.76 16 10 N -0.57 -19.28 3.19 -843.37 -2.69 -21.97 16 11 C 0.11 3.06 3.77 86.43 0.33 3.38 16 12 C -0.12 -3.18 5.10 29.57 0.15 -3.02 16 13 C 0.16 5.24 2.93 44.64 0.13 5.37 16 14 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 15 C -0.10 -2.79 3.80 -9.70 -0.04 -2.83 16 16 H 0.13 2.75 8.14 -2.38 -0.02 2.73 16 17 C -0.13 -4.37 6.14 32.29 0.20 -4.17 16 18 C 0.18 8.75 4.82 86.72 0.42 9.17 16 19 N -0.61 -27.69 3.04 -673.33 -2.05 -29.74 16 20 C -0.22 -10.90 8.84 84.03 0.74 -10.16 16 21 H 0.09 4.22 6.89 -2.91 -0.02 4.20 16 22 C -0.07 -3.65 5.49 84.86 0.47 -3.18 16 23 N -0.95 -57.14 10.41 21.65 0.23 -56.92 16 24 Si 0.96 45.44 29.55 68.60 2.03 47.47 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 C 0.15 4.89 4.61 86.56 0.40 5.29 16 29 N -0.38 -11.59 5.85 -47.99 -0.28 -11.87 16 30 H 0.45 12.37 4.31 -220.00 -0.95 11.43 16 31 N -0.28 -8.56 11.48 -47.50 -0.55 -9.11 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 38 H 0.06 0.98 7.60 -2.39 -0.02 0.97 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.17 4.71 7.79 -2.91 -0.02 4.69 16 42 H 0.05 1.79 5.77 -2.38 -0.01 1.77 16 43 H 0.09 2.00 6.38 -2.39 -0.02 1.99 16 44 H 0.08 2.23 7.36 -2.38 -0.02 2.21 16 45 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 2.35 7.81 -2.39 -0.02 2.33 16 47 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.00 -0.04 7.13 -2.39 -0.02 -0.06 16 49 H 0.00 0.18 7.58 -2.39 -0.02 0.17 16 50 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 51 H 0.07 2.18 7.98 -2.38 -0.02 2.16 16 52 H 0.03 1.36 6.63 -2.39 -0.02 1.35 16 Total: -1.00 -71.54 391.66 2.51 -69.03 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.03 Total: 25.07 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 5.92 Total: 11.79 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -5.34 Total: -129.60 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.07 Total: -23.76 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.54 2.51 -69.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036756223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.152 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds