Wall clock time and date at job start Wed Apr 1 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46828 * 2 1 4 4 C 1.52991 * 109.47619 * 239.99935 * 2 1 3 5 5 C 1.50696 * 109.46800 * 119.99358 * 2 1 3 6 6 C 1.39680 * 126.06736 * 75.00474 * 5 2 1 7 7 C 1.38401 * 105.35964 * 180.02562 * 6 5 2 8 8 C 1.47166 * 126.88391 * 179.97438 * 7 6 5 9 9 O 1.21629 * 119.99705 * 332.79703 * 8 7 6 10 10 N 1.34774 * 120.00046 * 152.80108 * 8 7 6 11 11 C 1.46598 * 119.69024 * 0.06208 * 10 8 7 12 12 C 1.54781 * 110.71556 * 228.03732 * 11 10 8 13 13 C 1.51520 * 106.80080 * 308.79697 * 12 11 10 14 14 H 1.09002 * 109.28321 * 306.63012 * 13 12 11 15 15 C 1.55365 * 107.78560 * 65.19025 * 13 12 11 16 16 H 1.09003 * 111.51004 * 49.83358 * 15 13 12 17 17 C 1.53734 * 100.22423 * 168.51391 * 15 13 12 18 18 C 1.55291 * 101.84216 * 320.90373 * 17 15 13 19 19 N 1.45468 * 116.86673 * 181.93021 * 13 12 11 20 20 C 1.36935 * 126.40751 * 30.89182 * 19 13 12 21 21 H 1.07997 * 119.99997 * 359.97438 * 20 19 13 22 22 C 1.38812 * 119.99963 * 179.97438 * 20 19 13 23 23 N 1.31613 * 120.00348 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99872 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47325 * 89.99795 * 24 22 20 26 26 H 1.48498 * 109.46976 * 210.00073 * 24 22 20 27 27 H 1.48508 * 109.46860 * 329.99988 * 24 22 20 28 28 C 1.47722 * 119.68585 * 180.34178 * 10 8 7 29 29 N 1.36598 * 106.23411 * 359.97438 * 7 6 5 30 30 H 0.96996 * 125.19485 * 179.97438 * 29 7 6 31 31 N 1.28449 * 109.61949 * 0.22928 * 29 7 6 32 32 H 1.08998 * 109.47388 * 300.00638 * 1 2 3 33 33 H 1.09004 * 109.46948 * 60.00537 * 1 2 3 34 34 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.46900 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47267 * 299.99360 * 3 2 1 37 37 H 1.08997 * 109.47170 * 59.99722 * 3 2 1 38 38 H 1.08996 * 109.47075 * 300.00038 * 4 2 1 39 39 H 1.09004 * 109.47346 * 59.99771 * 4 2 1 40 40 H 1.08998 * 109.47530 * 180.02562 * 4 2 1 41 41 H 1.07997 * 127.31610 * 359.97438 * 6 5 2 42 42 H 1.09004 * 109.25378 * 348.13880 * 11 10 8 43 43 H 1.08999 * 109.25344 * 107.56820 * 11 10 8 44 44 H 1.08996 * 109.87145 * 189.66555 * 12 11 10 45 45 H 1.09005 * 110.49486 * 68.27263 * 12 11 10 46 46 H 1.09002 * 110.95738 * 79.03729 * 17 15 13 47 47 H 1.08998 * 110.96030 * 202.76592 * 17 15 13 48 48 H 1.08997 * 109.91884 * 263.13835 * 18 17 15 49 49 H 1.08997 * 110.09049 * 141.91964 * 18 17 15 50 50 H 0.96998 * 120.00329 * 179.97438 * 23 22 20 51 51 H 1.08993 * 110.07351 * 247.12497 * 28 10 8 52 52 H 1.09003 * 110.06543 * 8.59609 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 2.0322 -0.7103 1.2305 6 6 2.0309 -2.0911 1.4412 7 6 2.5812 -2.2707 2.6983 8 6 2.8022 -3.5501 3.3912 9 8 2.0947 -4.5073 3.1409 10 7 3.7884 -3.6611 4.3030 11 6 4.6361 -2.5026 4.6004 12 6 6.1322 -2.8987 4.5779 13 6 6.2770 -4.1138 5.4714 14 1 5.8496 -3.8941 6.4498 15 6 5.4854 -5.2803 4.8183 16 1 5.7439 -5.3988 3.7660 17 6 5.9843 -6.4590 5.6698 18 6 7.4864 -6.1086 5.8502 19 7 7.6194 -4.6476 5.6427 20 6 8.7874 -3.9334 5.6167 21 1 8.7641 -2.8657 5.4561 22 6 10.0015 -4.5818 5.7968 23 7 10.0300 -5.8829 5.9930 24 14 11.5950 -3.6076 5.7606 25 1 11.9225 -3.1432 7.1325 26 1 12.6920 -4.4717 5.2554 27 1 11.4372 -2.4336 4.8650 28 6 4.0089 -4.9507 4.9889 29 7 2.8781 -1.0225 3.1671 30 1 3.2774 -0.8297 4.0297 31 7 2.5430 -0.1427 2.2933 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1300 1.4426 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 1.6768 -1.7488 -1.2491 39 1 1.6768 -0.2074 -2.1392 40 1 3.1301 -0.7216 -1.2489 41 1 1.6752 -2.8559 0.7667 42 1 4.4619 -1.7284 3.8531 43 1 4.3805 -2.1138 5.5861 44 1 6.7382 -2.0796 4.9650 45 1 6.4465 -3.1449 3.5636 46 1 5.4728 -6.4890 6.6319 47 1 5.8655 -7.4026 5.1372 48 1 8.0839 -6.6442 5.1126 49 1 7.8142 -6.3722 6.8558 50 1 10.8784 -6.3361 6.1185 51 1 3.7663 -4.8578 6.0474 52 1 3.3955 -5.7271 4.5317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036756224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:12 Heat of formation + Delta-G solvation = 74.207772 kcal Electronic energy + Delta-G solvation = -31469.514693 eV Core-core repulsion = 27471.604466 eV Total energy + Delta-G solvation = -3997.910227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.90032 -40.16427 -38.29158 -37.18887 -35.59083 -32.90378 -31.72986 -31.24355 -31.17913 -29.53476 -28.16743 -27.47961 -27.44519 -25.31261 -24.19111 -23.17919 -22.41799 -22.14155 -20.68928 -20.12454 -19.61019 -18.93593 -17.75744 -16.70489 -16.31694 -16.01804 -15.81918 -15.20086 -15.02549 -14.86032 -14.45716 -14.18926 -14.13165 -13.92165 -13.88252 -13.51509 -13.30338 -13.12196 -12.70929 -12.59393 -12.48244 -12.36332 -11.86879 -11.76064 -11.60273 -11.55196 -11.49822 -11.30535 -11.23010 -10.94999 -10.86548 -10.84466 -10.71902 -10.29108 -10.17497 -10.03022 -9.94261 -9.71175 -9.59163 -9.27545 -9.26067 -8.71798 -8.68716 -6.91339 -5.78084 -3.11826 1.17570 2.36673 2.55518 2.72358 3.12811 3.34959 3.39973 3.42139 4.07560 4.29716 4.42606 4.53508 4.65370 4.77685 4.88019 4.95633 5.03234 5.10492 5.20907 5.22866 5.33253 5.39975 5.43269 5.46397 5.48301 5.52885 5.57813 5.67733 5.68652 5.69893 5.76192 5.83408 5.88989 5.91128 6.00230 6.04096 6.09029 6.11023 6.12995 6.20966 6.30666 6.34757 6.50893 6.54147 6.68403 6.75791 6.95645 7.20868 7.48312 7.54702 7.74856 7.79581 7.96936 8.17513 9.12367 9.75934 10.43410 11.34322 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.002642 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.656372 B =10593.659758 C =11833.363037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.017 3.983 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.041 3.959 6 C -0.153 4.153 7 C -0.027 4.027 8 C 0.586 3.414 9 O -0.526 6.526 10 N -0.600 5.600 11 C 0.089 3.911 12 C -0.126 4.126 13 C 0.167 3.833 14 H 0.021 0.979 15 C -0.125 4.125 16 H 0.081 0.919 17 C -0.134 4.134 18 C 0.176 3.824 19 N -0.594 5.594 20 C -0.229 4.229 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.127 3.873 29 N -0.383 5.383 30 H 0.448 0.552 31 N -0.271 5.271 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.161 0.839 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.040 0.960 50 H 0.253 0.747 51 H 0.073 0.927 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.864 9.996 -8.731 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.015 3.985 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.118 4.118 6 C -0.182 4.182 7 C -0.155 4.155 8 C 0.372 3.628 9 O -0.402 6.402 10 N -0.333 5.333 11 C -0.035 4.035 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.039 0.961 15 C -0.145 4.145 16 H 0.099 0.901 17 C -0.173 4.173 18 C 0.052 3.948 19 N -0.319 5.319 20 C -0.357 4.357 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.006 3.994 29 N -0.104 5.104 30 H 0.298 0.702 31 N -0.103 5.103 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.178 0.822 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.693 10.442 -8.329 22.168 hybrid contribution 1.139 -0.184 0.278 1.187 sum -16.554 10.258 -8.051 21.073 Atomic orbital electron populations 1.21870 0.93346 1.02341 1.01992 1.18906 0.95360 0.94844 0.89385 1.21774 1.01408 0.94247 1.01836 1.21887 1.01526 1.00476 0.95890 1.21889 1.02940 0.91532 0.95435 1.21938 1.04272 0.96565 0.95458 1.21713 1.09022 0.86747 0.98054 1.17126 0.80806 0.85960 0.78880 1.90820 1.47061 1.38223 1.64051 1.48251 1.31442 1.13390 1.40181 1.22402 0.92768 0.87540 1.00833 1.22023 0.92121 1.00425 1.01971 1.20665 0.87745 0.91270 0.94513 0.96146 1.22655 0.92976 0.98247 1.00635 0.90061 1.22697 0.99703 0.96584 0.98342 1.21549 0.88737 0.84053 1.00485 1.44205 0.99795 1.03682 1.84187 1.18967 0.82809 0.91095 1.42796 0.90422 1.24795 0.97649 0.95882 1.01979 1.69930 1.24615 1.07013 1.55163 0.86157 0.83423 0.78737 0.77656 1.21593 1.21653 1.20708 1.21719 0.97255 0.83764 0.96642 1.44503 1.45999 1.02881 1.16997 0.70171 1.73074 1.16761 1.20122 1.00322 0.92509 0.91938 0.92189 0.92405 0.92472 0.92034 0.92082 0.91886 0.92277 0.82154 0.90385 0.90900 0.90238 0.91001 0.92227 0.91904 0.92686 0.94229 0.93677 0.90886 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.46 37.16 0.31 -0.71 16 2 C 0.02 0.15 0.96 -155.66 -0.15 0.00 16 3 C -0.14 -1.10 8.04 37.16 0.30 -0.81 16 4 C -0.14 -1.06 8.20 37.15 0.30 -0.76 16 5 C 0.04 0.45 5.65 -82.47 -0.47 -0.01 16 6 C -0.15 -1.85 10.22 -38.98 -0.40 -2.25 16 7 C -0.03 -0.35 6.43 -82.06 -0.53 -0.88 16 8 C 0.59 8.54 7.63 -12.64 -0.10 8.44 16 9 O -0.53 -9.11 16.37 5.25 0.09 -9.02 16 10 N -0.60 -8.19 3.00 -173.33 -0.52 -8.71 16 11 C 0.09 1.07 5.27 -3.05 -0.02 1.05 16 12 C -0.13 -2.01 5.52 -26.54 -0.15 -2.15 16 13 C 0.17 3.13 2.57 -67.98 -0.17 2.96 16 14 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 15 C -0.12 -2.11 2.86 -89.37 -0.26 -2.37 16 16 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 17 C -0.13 -2.38 6.54 -25.14 -0.16 -2.55 16 18 C 0.18 4.10 5.45 -1.91 -0.01 4.09 16 19 N -0.59 -14.28 3.35 -163.09 -0.55 -14.83 16 20 C -0.23 -6.04 9.86 -15.06 -0.15 -6.19 16 21 H 0.08 1.96 7.18 -52.49 -0.38 1.59 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.42 10.43 55.49 0.58 -25.84 16 24 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 C 0.13 1.82 5.96 -3.76 -0.02 1.80 16 29 N -0.38 -4.23 5.61 33.48 0.19 -4.05 16 30 H 0.45 3.94 6.35 -190.46 -1.21 2.73 16 31 N -0.27 -3.19 11.48 33.64 0.39 -2.80 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.06 0.45 7.60 -51.93 -0.39 0.06 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.16 1.77 7.79 -52.49 -0.41 1.36 16 42 H 0.08 0.83 4.02 -51.93 -0.21 0.63 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.27 7.59 -51.93 -0.39 0.87 16 45 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 46 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 49 H 0.04 1.01 7.76 -51.93 -0.40 0.61 16 50 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 52 H 0.09 1.38 6.99 -51.93 -0.36 1.01 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -31.45 398.71 -10.18 -41.63 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -9.59 Total: 1.65 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.75 Total: -0.59 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.09 Total: -56.22 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.45 -10.18 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036756224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.840 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds