Wall clock time and date at job start Wed Apr 1 2020 04:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 C 1.50699 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.38053 * 126.29004 * 269.99870 * 4 3 2 6 6 C 1.47430 * 126.41175 * 359.95701 * 5 4 3 7 7 O 1.21596 * 120.00221 * 319.97205 * 6 5 4 8 8 N 1.34781 * 119.99619 * 139.97752 * 6 5 4 9 9 C 1.47067 * 120.93094 * 174.87293 * 8 6 5 10 10 C 1.52628 * 107.78744 * 121.18581 * 9 8 6 11 11 C 1.50295 * 112.42838 * 52.41234 * 10 9 8 12 12 H 1.09004 * 105.74602 * 196.47178 * 11 10 9 13 13 C 1.52114 * 116.66448 * 314.26090 * 11 10 9 14 14 H 1.09001 * 110.76442 * 272.11373 * 13 11 10 15 15 C 1.56005 * 102.18132 * 153.96932 * 13 11 10 16 16 C 1.55068 * 101.17261 * 323.00434 * 15 13 11 17 17 N 1.46506 * 113.03285 * 80.89811 * 11 10 9 18 18 C 1.36934 * 125.97161 * 47.05613 * 17 11 10 19 19 H 1.08009 * 119.99796 * 10.21420 * 18 17 11 20 20 C 1.38810 * 120.00318 * 190.21069 * 18 17 11 21 21 N 1.31626 * 119.99688 * 9.16319 * 20 18 17 22 22 Si 1.86798 * 120.00341 * 189.15786 * 20 18 17 23 23 H 1.48502 * 109.46954 * 94.97694 * 22 20 18 24 24 H 1.48503 * 109.47234 * 214.97797 * 22 20 18 25 25 H 1.48496 * 109.47120 * 334.97950 * 22 20 18 26 26 C 1.46118 * 120.93071 * 354.89217 * 8 6 5 27 27 C 1.41286 * 107.16826 * 180.22343 * 5 4 3 28 28 N 1.30448 * 108.02538 * 359.58784 * 27 5 4 29 29 N 1.34263 * 126.29609 * 89.97570 * 4 3 2 30 30 C 1.46504 * 125.74967 * 0.02562 * 29 4 3 31 31 H 1.08999 * 109.46819 * 300.00285 * 1 2 3 32 32 H 1.08996 * 109.46741 * 60.00288 * 1 2 3 33 33 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47545 * 239.99812 * 2 1 3 35 35 H 1.09003 * 109.47128 * 119.99851 * 2 1 3 36 36 H 1.08993 * 109.47079 * 60.00033 * 3 2 1 37 37 H 1.08996 * 109.47064 * 299.99514 * 3 2 1 38 38 H 1.08999 * 109.79479 * 1.60967 * 9 8 6 39 39 H 1.09002 * 109.79437 * 240.75938 * 9 8 6 40 40 H 1.09000 * 108.89244 * 291.65167 * 10 9 8 41 41 H 1.09005 * 108.81606 * 173.11419 * 10 9 8 42 42 H 1.09004 * 111.08207 * 80.98317 * 15 13 11 43 43 H 1.09000 * 111.07621 * 205.02900 * 15 13 11 44 44 H 1.08999 * 110.35699 * 155.68062 * 16 15 13 45 45 H 1.09000 * 110.35725 * 277.87275 * 16 15 13 46 46 H 0.96999 * 119.99827 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.03962 * 111.87056 * 26 8 6 48 48 H 1.08997 * 109.04324 * 352.99384 * 26 8 6 49 49 H 1.08006 * 125.98783 * 179.73918 * 27 5 4 50 50 H 1.09007 * 109.46381 * 90.00072 * 30 29 4 51 51 H 1.08995 * 109.46811 * 209.99979 * 30 29 4 52 52 H 1.09002 * 109.47145 * 330.00544 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3646 1.4423 1.1118 6 6 3.9268 1.4431 2.5196 7 8 2.9767 2.1210 2.8605 8 7 4.5798 0.6923 3.4287 9 6 4.2331 0.7622 4.8562 10 6 3.8244 -0.6379 5.3059 11 6 4.8534 -1.6758 4.9558 12 1 4.3459 -2.6366 5.0427 13 6 5.4245 -1.6230 3.5469 14 1 4.8096 -2.2029 2.8587 15 6 6.8246 -2.2849 3.7342 16 6 7.2272 -1.7462 5.1315 17 7 5.9687 -1.7201 5.9048 18 6 5.8632 -1.7348 7.2700 19 1 4.8993 -1.8792 7.7355 20 6 6.9948 -1.5643 8.0556 21 7 8.1343 -1.2101 7.5000 22 14 6.9005 -1.8372 9.9011 23 1 7.3221 -3.2253 10.2183 24 1 7.7998 -0.8770 10.5901 25 1 5.5048 -1.6263 10.3620 26 6 5.6523 -0.2136 3.0236 27 6 5.6993 1.4476 0.6484 28 7 5.6738 1.4418 -0.6558 29 7 4.3413 1.4422 -1.0831 30 6 3.8891 1.4423 -2.4766 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6768 1.9563 -0.8900 38 1 3.4030 1.4536 5.0010 39 1 5.0974 1.0967 5.4300 40 1 2.8810 -0.9008 4.8275 41 1 3.6821 -0.6325 6.3866 42 1 6.7466 -3.3722 3.7407 43 1 7.5230 -1.9483 2.9680 44 1 7.9480 -2.4147 5.6023 45 1 7.6424 -0.7420 5.0455 46 1 8.9250 -1.0906 8.0490 47 1 6.5996 0.1609 3.4115 48 1 5.7016 -0.2422 1.9351 49 1 6.5854 1.4529 1.2658 50 1 3.7774 2.4702 -2.8221 51 1 4.6233 0.9282 -3.0968 52 1 2.9302 0.9290 -2.5475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036760164.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:22 Heat of formation + Delta-G solvation = 63.803467 kcal Electronic energy + Delta-G solvation = -32332.007753 eV Core-core repulsion = 28333.646361 eV Total energy + Delta-G solvation = -3998.361392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.65605 -39.72791 -38.00215 -35.57648 -34.82523 -33.54879 -32.67427 -31.89978 -30.73257 -29.36573 -27.98662 -27.12568 -26.71534 -25.19869 -23.94505 -22.84835 -22.01075 -21.76556 -20.55477 -20.00304 -19.31148 -18.09460 -17.12987 -16.48127 -16.23519 -15.89772 -15.63762 -15.13632 -15.05968 -14.64155 -14.50079 -14.27856 -13.91452 -13.80031 -13.69201 -13.41600 -12.99378 -12.95380 -12.85804 -12.71393 -12.40708 -12.29379 -12.07311 -11.70835 -11.66246 -11.53761 -11.26556 -11.20553 -11.12244 -10.99145 -10.79474 -10.71404 -10.48418 -10.15851 -10.05527 -9.81271 -9.79559 -9.59373 -9.57018 -9.37578 -8.61976 -8.57075 -8.11001 -6.76152 -5.74250 -3.05936 1.49838 2.19637 2.23156 3.23241 3.40358 3.46446 3.47846 3.54627 4.24354 4.29320 4.49867 4.61436 4.74508 4.80538 4.84897 5.00746 5.04512 5.11463 5.16467 5.18597 5.29254 5.38618 5.44350 5.45808 5.48699 5.55423 5.57818 5.65752 5.72575 5.81060 5.83948 5.95143 6.00933 6.03261 6.05771 6.13662 6.18068 6.33876 6.39443 6.44188 6.55997 6.59041 6.69958 6.70881 6.87235 6.97838 7.07448 7.46615 7.51041 7.58517 7.78686 7.84767 8.26970 8.52415 9.20200 9.83000 10.52222 11.38926 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.003020 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.945436 B = 9269.016185 C = 9873.686555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.068 4.068 4 C 0.147 3.853 5 C -0.282 4.282 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.595 5.595 9 C 0.122 3.878 10 C -0.133 4.133 11 C 0.172 3.828 12 H 0.010 0.990 13 C -0.102 4.102 14 H 0.070 0.930 15 C -0.144 4.144 16 C 0.173 3.827 17 N -0.591 5.591 18 C -0.224 4.224 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.116 3.884 27 C 0.084 3.916 28 N -0.299 5.299 29 N -0.365 5.365 30 C 0.097 3.903 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.252 0.748 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.192 0.808 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 3.114 -20.153 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.106 4.106 4 C 0.015 3.985 5 C -0.297 4.297 6 C 0.384 3.616 7 O -0.434 6.434 8 N -0.326 5.326 9 C 0.001 3.999 10 C -0.173 4.173 11 C 0.064 3.936 12 H 0.027 0.973 13 C -0.122 4.122 14 H 0.088 0.912 15 C -0.183 4.183 16 C 0.049 3.951 17 N -0.317 5.317 18 C -0.352 4.352 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.563 5.563 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.007 4.007 27 C -0.103 4.103 28 N -0.119 5.119 29 N -0.145 5.145 30 C -0.044 4.044 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.208 0.792 50 H 0.095 0.905 51 H 0.111 0.889 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.653 3.487 -21.001 23.375 hybrid contribution -0.194 -0.197 1.699 1.721 sum -9.847 3.290 -19.302 21.917 Atomic orbital electron populations 1.21749 0.94894 1.02027 1.02111 1.21462 0.96390 0.95017 1.02576 1.20537 0.86122 0.98892 1.05099 1.21367 0.94317 0.96544 0.86246 1.20001 0.93008 1.22940 0.93704 1.17219 0.81753 0.79027 0.83603 1.90699 1.28392 1.43730 1.80603 1.47769 1.36333 1.40638 1.07842 1.21492 1.01463 0.97979 0.78998 1.21565 0.98256 0.95200 1.02325 1.19592 0.89879 0.95664 0.88416 0.97274 1.21866 0.98245 0.95173 0.96948 0.91182 1.23297 0.94858 0.99734 1.00377 1.21448 0.89116 0.98467 0.86114 1.44567 1.00029 1.86002 1.01068 1.18933 0.94305 1.42162 0.79845 0.90661 1.24797 0.96264 1.01303 0.97848 1.69948 1.00232 1.52160 1.33988 0.86163 0.77234 0.77473 0.85281 1.21737 1.21843 1.20609 1.21517 0.90164 0.89433 0.99576 1.24104 0.97312 0.97122 0.91717 1.77185 0.95853 1.25576 1.13238 1.48271 1.04065 1.56023 1.06119 1.21919 1.01188 1.03628 0.77647 0.92090 0.92767 0.92369 0.92287 0.91144 0.87209 0.90536 0.89872 0.90492 0.93315 0.90194 0.91993 0.91959 0.91759 0.95377 0.93778 0.91026 0.90279 0.79175 0.90480 0.88894 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.04 5.92 -26.73 -0.16 -1.19 16 3 C -0.07 -0.66 5.02 -27.88 -0.14 -0.80 16 4 C 0.15 1.78 6.25 -81.60 -0.51 1.26 16 5 C -0.28 -4.02 5.20 -105.06 -0.55 -4.57 16 6 C 0.60 9.89 7.44 -12.52 -0.09 9.80 16 7 O -0.55 -10.48 15.12 5.28 0.08 -10.40 16 8 N -0.59 -9.91 2.94 -175.61 -0.52 -10.42 16 9 C 0.12 2.22 6.51 -3.92 -0.03 2.20 16 10 C -0.13 -2.49 5.60 -28.27 -0.16 -2.65 16 11 C 0.17 3.44 2.70 -69.73 -0.19 3.26 16 12 H 0.01 0.20 8.09 -51.93 -0.42 -0.22 16 13 C -0.10 -1.73 3.45 -89.95 -0.31 -2.04 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.14 -2.52 6.38 -24.03 -0.15 -2.67 16 16 C 0.17 3.95 5.07 -2.27 -0.01 3.94 16 17 N -0.59 -14.22 3.29 -165.45 -0.54 -14.77 16 18 C -0.22 -5.96 9.42 -15.06 -0.14 -6.10 16 19 H 0.08 1.96 7.43 -52.48 -0.39 1.58 16 20 C -0.01 -0.14 5.41 -17.43 -0.09 -0.24 16 21 N -0.92 -26.07 10.73 55.49 0.60 -25.48 16 22 Si 0.91 21.73 29.56 -169.99 -5.03 16.71 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.12 1.81 4.70 -4.73 -0.02 1.78 16 27 C 0.08 1.12 9.64 -16.98 -0.16 0.95 16 28 N -0.30 -3.92 12.50 30.86 0.39 -3.54 16 29 N -0.37 -4.02 3.98 -63.33 -0.25 -4.28 16 30 C 0.10 0.61 11.06 59.85 0.66 1.27 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 1.32 6.73 -51.93 -0.35 0.97 16 37 H 0.08 0.55 7.69 -51.93 -0.40 0.15 16 38 H 0.08 1.49 7.03 -51.93 -0.37 1.13 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.60 7.00 -51.93 -0.36 1.24 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 44 H 0.06 1.66 7.08 -51.93 -0.37 1.29 16 45 H 0.03 0.69 7.32 -51.93 -0.38 0.31 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.07 1.18 6.80 -51.93 -0.35 0.83 16 48 H 0.08 1.09 4.75 -51.93 -0.25 0.84 16 49 H 0.19 2.20 7.36 -52.48 -0.39 1.82 16 50 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.09 0.37 7.62 -51.93 -0.40 -0.03 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -32.21 399.87 -9.55 -41.76 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.62 Total: 0.95 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.69 Total: 3.44 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.33 Total: -58.48 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.21 -9.55 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760164.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.566 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds