Wall clock time and date at job start Wed Apr 1 2020 04:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 C 1.50699 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.38053 * 126.29004 * 269.99870 * 4 3 2 6 6 C 1.47430 * 126.41175 * 359.95701 * 5 4 3 7 7 O 1.21596 * 120.00221 * 319.97205 * 6 5 4 8 8 N 1.34781 * 119.99619 * 139.97752 * 6 5 4 9 9 C 1.47067 * 120.93094 * 174.87293 * 8 6 5 10 10 C 1.52628 * 107.78744 * 121.18581 * 9 8 6 11 11 C 1.50295 * 112.42838 * 52.41234 * 10 9 8 12 12 H 1.09004 * 105.74602 * 196.47178 * 11 10 9 13 13 C 1.52114 * 116.66448 * 314.26090 * 11 10 9 14 14 H 1.09001 * 110.76442 * 272.11373 * 13 11 10 15 15 C 1.56005 * 102.18132 * 153.96932 * 13 11 10 16 16 C 1.55068 * 101.17261 * 323.00434 * 15 13 11 17 17 N 1.46506 * 113.03285 * 80.89811 * 11 10 9 18 18 C 1.36934 * 125.97161 * 47.05613 * 17 11 10 19 19 H 1.08009 * 119.99796 * 10.21420 * 18 17 11 20 20 C 1.38810 * 120.00318 * 190.21069 * 18 17 11 21 21 N 1.31626 * 119.99688 * 9.16319 * 20 18 17 22 22 Si 1.86798 * 120.00341 * 189.15786 * 20 18 17 23 23 H 1.48502 * 109.46954 * 94.97694 * 22 20 18 24 24 H 1.48503 * 109.47234 * 214.97797 * 22 20 18 25 25 H 1.48496 * 109.47120 * 334.97950 * 22 20 18 26 26 C 1.46118 * 120.93071 * 354.89217 * 8 6 5 27 27 C 1.41286 * 107.16826 * 180.22343 * 5 4 3 28 28 N 1.30448 * 108.02538 * 359.58784 * 27 5 4 29 29 N 1.34263 * 126.29609 * 89.97570 * 4 3 2 30 30 C 1.46504 * 125.74967 * 0.02562 * 29 4 3 31 31 H 1.08999 * 109.46819 * 300.00285 * 1 2 3 32 32 H 1.08996 * 109.46741 * 60.00288 * 1 2 3 33 33 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47545 * 239.99812 * 2 1 3 35 35 H 1.09003 * 109.47128 * 119.99851 * 2 1 3 36 36 H 1.08993 * 109.47079 * 60.00033 * 3 2 1 37 37 H 1.08996 * 109.47064 * 299.99514 * 3 2 1 38 38 H 1.08999 * 109.79479 * 1.60967 * 9 8 6 39 39 H 1.09002 * 109.79437 * 240.75938 * 9 8 6 40 40 H 1.09000 * 108.89244 * 291.65167 * 10 9 8 41 41 H 1.09005 * 108.81606 * 173.11419 * 10 9 8 42 42 H 1.09004 * 111.08207 * 80.98317 * 15 13 11 43 43 H 1.09000 * 111.07621 * 205.02900 * 15 13 11 44 44 H 1.08999 * 110.35699 * 155.68062 * 16 15 13 45 45 H 1.09000 * 110.35725 * 277.87275 * 16 15 13 46 46 H 0.96999 * 119.99827 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.03962 * 111.87056 * 26 8 6 48 48 H 1.08997 * 109.04324 * 352.99384 * 26 8 6 49 49 H 1.08006 * 125.98783 * 179.73918 * 27 5 4 50 50 H 1.09007 * 109.46381 * 90.00072 * 30 29 4 51 51 H 1.08995 * 109.46811 * 209.99979 * 30 29 4 52 52 H 1.09002 * 109.47145 * 330.00544 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3646 1.4423 1.1118 6 6 3.9268 1.4431 2.5196 7 8 2.9767 2.1210 2.8605 8 7 4.5798 0.6923 3.4287 9 6 4.2331 0.7622 4.8562 10 6 3.8244 -0.6379 5.3059 11 6 4.8534 -1.6758 4.9558 12 1 4.3459 -2.6366 5.0427 13 6 5.4245 -1.6230 3.5469 14 1 4.8096 -2.2029 2.8587 15 6 6.8246 -2.2849 3.7342 16 6 7.2272 -1.7462 5.1315 17 7 5.9687 -1.7201 5.9048 18 6 5.8632 -1.7348 7.2700 19 1 4.8993 -1.8792 7.7355 20 6 6.9948 -1.5643 8.0556 21 7 8.1343 -1.2101 7.5000 22 14 6.9005 -1.8372 9.9011 23 1 7.3221 -3.2253 10.2183 24 1 7.7998 -0.8770 10.5901 25 1 5.5048 -1.6263 10.3620 26 6 5.6523 -0.2136 3.0236 27 6 5.6993 1.4476 0.6484 28 7 5.6738 1.4418 -0.6558 29 7 4.3413 1.4422 -1.0831 30 6 3.8891 1.4423 -2.4766 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6768 1.9563 -0.8900 38 1 3.4030 1.4536 5.0010 39 1 5.0974 1.0967 5.4300 40 1 2.8810 -0.9008 4.8275 41 1 3.6821 -0.6325 6.3866 42 1 6.7466 -3.3722 3.7407 43 1 7.5230 -1.9483 2.9680 44 1 7.9480 -2.4147 5.6023 45 1 7.6424 -0.7420 5.0455 46 1 8.9250 -1.0906 8.0490 47 1 6.5996 0.1609 3.4115 48 1 5.7016 -0.2422 1.9351 49 1 6.5854 1.4529 1.2658 50 1 3.7774 2.4702 -2.8221 51 1 4.6233 0.9282 -3.0968 52 1 2.9302 0.9290 -2.5475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036760164.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:21 Heat of formation + Delta-G solvation = 44.986189 kcal Electronic energy + Delta-G solvation = -32332.823731 eV Core-core repulsion = 28333.646361 eV Total energy + Delta-G solvation = -3999.177370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.62617 -41.12739 -39.46781 -36.60759 -36.09459 -34.50020 -34.40654 -33.37974 -31.67471 -31.08226 -29.41408 -28.20393 -27.42233 -26.78370 -25.61912 -24.21518 -23.01481 -22.66674 -21.99669 -21.32963 -20.54605 -19.46205 -18.48200 -18.15577 -17.39871 -16.99178 -16.81036 -16.53357 -16.22902 -15.97096 -15.73155 -15.63562 -15.39181 -14.98504 -14.60114 -14.53706 -14.27750 -14.09899 -13.97722 -13.76135 -13.49417 -13.48015 -13.22808 -13.08719 -13.03421 -12.88666 -12.65253 -12.46502 -12.42851 -12.22793 -12.18177 -11.97600 -11.92269 -11.61905 -11.56465 -11.55583 -11.40026 -11.32906 -10.82641 -10.61746 -10.32598 -9.69840 -9.44552 -8.74318 -7.82711 -5.14772 0.55713 1.16089 1.43461 1.47649 1.48096 1.56750 1.98708 2.28666 2.52295 3.35844 3.44188 3.45775 3.64238 3.78478 3.85274 3.88593 4.02886 4.06762 4.08715 4.17146 4.23195 4.31388 4.40930 4.42240 4.44013 4.50560 4.56556 4.60992 4.61219 4.68616 4.77158 4.80383 4.82362 4.89577 4.93522 4.95284 5.06335 5.07658 5.18936 5.19579 5.29534 5.32302 5.38970 5.42042 5.45678 5.54366 5.60772 5.67980 5.81442 5.91755 6.27346 6.50707 6.56213 7.15122 7.21769 7.84055 8.51982 9.29257 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.003020 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.945436 B = 9269.016185 C = 9873.686555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.064 4.064 4 C 0.156 3.844 5 C -0.313 4.313 6 C 0.598 3.402 7 O -0.583 6.583 8 N -0.596 5.596 9 C 0.132 3.868 10 C -0.125 4.125 11 C 0.167 3.833 12 H 0.004 0.996 13 C -0.094 4.094 14 H 0.098 0.902 15 C -0.126 4.126 16 C 0.178 3.822 17 N -0.609 5.609 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.060 4.060 21 N -0.944 5.944 22 Si 0.967 3.033 23 H -0.290 1.290 24 H -0.298 1.298 25 H -0.270 1.270 26 C 0.124 3.876 27 C 0.081 3.919 28 N -0.314 5.314 29 N -0.356 5.356 30 C 0.083 3.917 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.027 0.973 45 H 0.002 0.998 46 H 0.245 0.755 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.199 0.801 50 H 0.093 0.907 51 H 0.102 0.898 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.565 2.692 -23.395 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.103 4.103 4 C 0.023 3.977 5 C -0.327 4.327 6 C 0.389 3.611 7 O -0.464 6.464 8 N -0.326 5.326 9 C 0.009 3.991 10 C -0.165 4.165 11 C 0.060 3.940 12 H 0.021 0.979 13 C -0.113 4.113 14 H 0.116 0.884 15 C -0.165 4.165 16 C 0.054 3.946 17 N -0.334 5.334 18 C -0.357 4.357 19 H 0.093 0.907 20 C -0.254 4.254 21 N -0.593 5.593 22 Si 0.797 3.203 23 H -0.217 1.217 24 H -0.225 1.225 25 H -0.195 1.195 26 C 0.001 3.999 27 C -0.106 4.106 28 N -0.134 5.134 29 N -0.135 5.135 30 C -0.056 4.056 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.045 0.955 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.123 0.877 49 H 0.216 0.784 50 H 0.112 0.888 51 H 0.121 0.879 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.254 3.052 -24.291 26.945 hybrid contribution 0.218 -0.035 2.606 2.615 sum -11.036 3.018 -21.685 24.518 Atomic orbital electron populations 1.21736 0.93834 1.02490 1.02483 1.21416 0.97241 0.94101 1.02148 1.20585 0.84590 0.99658 1.05491 1.21647 0.95233 0.94845 0.86020 1.19886 0.94089 1.26012 0.92749 1.17551 0.81039 0.78065 0.84477 1.90677 1.29745 1.44742 1.81270 1.47747 1.36719 1.41118 1.07060 1.21210 1.00192 0.97575 0.80092 1.21437 0.98667 0.95129 1.01252 1.19802 0.89066 0.95554 0.89568 0.97864 1.21870 0.97815 0.96297 0.95365 0.88424 1.23158 0.95761 1.00039 0.97526 1.21254 0.88141 0.96451 0.88801 1.44812 1.01759 1.85821 1.01028 1.19218 0.94190 1.40758 0.81507 0.90670 1.25508 0.96194 1.02100 1.01601 1.70133 1.00550 1.53733 1.34892 0.85217 0.77371 0.76858 0.80863 1.21726 1.22468 1.19498 1.21506 0.89161 0.88313 1.00935 1.24222 0.97232 0.97140 0.91971 1.77147 0.97291 1.25948 1.13002 1.48644 1.03166 1.54222 1.07510 1.22399 1.02725 1.05353 0.75107 0.93431 0.90710 0.91881 0.90462 0.93768 0.89671 0.87253 0.89866 0.93245 0.91507 0.92122 0.91240 0.88878 0.95464 0.97982 0.94542 0.92258 0.87678 0.78425 0.88817 0.87908 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.11 -1.67 5.92 30.60 0.18 -1.49 16 3 C -0.06 -1.09 5.02 29.85 0.15 -0.94 16 4 C 0.16 3.40 6.25 42.14 0.26 3.66 16 5 C -0.31 -8.48 5.20 -20.15 -0.10 -8.58 16 6 C 0.60 19.65 7.44 86.66 0.65 20.29 16 7 O -0.58 -22.15 15.12 -4.02 -0.06 -22.21 16 8 N -0.60 -19.73 2.94 -827.75 -2.44 -22.17 16 9 C 0.13 4.92 6.51 86.15 0.56 5.48 16 10 C -0.12 -4.71 5.60 29.60 0.17 -4.54 16 11 C 0.17 6.64 2.70 43.82 0.12 6.76 16 12 H 0.00 0.15 8.09 -2.39 -0.02 0.13 16 13 C -0.09 -3.00 3.45 -10.36 -0.04 -3.04 16 14 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 15 C -0.13 -4.25 6.38 32.34 0.21 -4.04 16 16 C 0.18 8.36 5.07 86.85 0.44 8.80 16 17 N -0.61 -30.00 3.29 -677.36 -2.23 -32.23 16 18 C -0.23 -12.43 9.42 84.03 0.79 -11.64 16 19 H 0.08 4.01 7.43 -2.91 -0.02 3.99 16 20 C -0.06 -3.39 5.41 84.86 0.46 -2.93 16 21 N -0.94 -55.90 10.73 21.65 0.23 -55.67 16 22 Si 0.97 45.84 29.56 68.60 2.03 47.86 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.12 3.70 4.70 86.14 0.40 4.11 16 27 C 0.08 2.00 9.64 85.65 0.83 2.83 16 28 N -0.31 -7.49 12.50 -56.27 -0.70 -8.19 16 29 N -0.36 -6.72 3.98 -354.29 -1.41 -8.13 16 30 C 0.08 0.68 11.06 127.77 1.41 2.10 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.95 6.73 -2.39 -0.02 1.94 16 37 H 0.11 1.13 7.69 -2.39 -0.02 1.11 16 38 H 0.08 3.08 7.03 -2.39 -0.02 3.06 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.50 7.00 -2.38 -0.02 2.49 16 42 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.09 2.59 7.94 -2.39 -0.02 2.57 16 44 H 0.03 1.45 7.08 -2.39 -0.02 1.44 16 45 H 0.00 0.11 7.32 -2.39 -0.02 0.09 16 46 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.06 1.94 6.80 -2.39 -0.02 1.93 16 48 H 0.11 2.65 4.75 -2.39 -0.01 2.64 16 49 H 0.20 4.35 7.36 -2.91 -0.02 4.32 16 50 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 51 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.12 0.35 7.62 -2.39 -0.02 0.33 16 Total: -1.00 -72.84 399.87 3.53 -69.31 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.91 Total: 15.73 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 7.20 Total: 15.69 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -6.54 Total: -126.38 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.06 Total: -22.21 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -72.84 3.53 -69.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036760164.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.299 kcal (2) G-P(sol) polarization free energy of solvation -72.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds