Wall clock time and date at job start Wed Apr 1 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34953 * 126.03817 * 2 1 4 4 C 1.35319 * 107.74479 * 180.14613 * 3 2 1 5 5 C 1.50701 * 126.03578 * 179.87474 * 4 3 2 6 6 C 1.52999 * 109.47329 * 52.09714 * 5 4 3 7 7 C 1.53003 * 109.47138 * 292.09348 * 5 4 3 8 8 C 1.50707 * 109.46979 * 172.09956 * 5 4 3 9 9 O 1.21274 * 120.00490 * 123.78271 * 8 5 4 10 10 N 1.34776 * 119.99751 * 303.78619 * 8 5 4 11 11 C 1.46601 * 119.68259 * 355.73283 * 10 8 5 12 12 C 1.53960 * 110.57715 * 132.17705 * 11 10 8 13 13 C 1.51542 * 107.34039 * 51.04232 * 12 11 10 14 14 H 1.08998 * 109.25587 * 53.72275 * 13 12 11 15 15 C 1.55356 * 107.81288 * 295.16486 * 13 12 11 16 16 H 1.09007 * 111.51082 * 309.57755 * 15 13 12 17 17 C 1.53741 * 100.22376 * 190.89768 * 15 13 12 18 18 C 1.55288 * 101.83973 * 39.09112 * 17 15 13 19 19 N 1.45470 * 117.35689 * 178.09203 * 13 12 11 20 20 C 1.36939 * 126.40704 * 329.38783 * 19 13 12 21 21 H 1.07990 * 119.99889 * 359.97438 * 20 19 13 22 22 C 1.38814 * 119.99737 * 179.97438 * 20 19 13 23 23 N 1.31620 * 120.00055 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47480 * 89.99776 * 24 22 20 26 26 H 1.48501 * 109.47001 * 210.00413 * 24 22 20 27 27 H 1.48508 * 109.46896 * 329.99539 * 24 22 20 28 28 C 1.47715 * 119.68741 * 175.75465 * 10 8 5 29 29 C 1.39868 * 107.92241 * 359.61263 * 4 3 2 30 30 N 1.30844 * 108.20091 * 0.23823 * 29 4 3 31 31 H 1.08999 * 109.47070 * 270.26302 * 1 2 3 32 32 H 1.09001 * 109.47064 * 30.26111 * 1 2 3 33 33 H 1.09000 * 109.46805 * 150.25450 * 1 2 3 34 34 H 1.07997 * 126.12648 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.46729 * 187.79980 * 6 5 4 36 36 H 1.08997 * 109.46819 * 307.79869 * 6 5 4 37 37 H 1.08998 * 109.46600 * 67.80147 * 6 5 4 38 38 H 1.08998 * 109.47176 * 306.67968 * 7 5 4 39 39 H 1.08996 * 109.46781 * 66.68049 * 7 5 4 40 40 H 1.08999 * 109.46950 * 186.67672 * 7 5 4 41 41 H 1.09007 * 109.25406 * 252.45435 * 11 10 8 42 42 H 1.08997 * 109.26123 * 11.92907 * 11 10 8 43 43 H 1.08995 * 109.88006 * 170.51547 * 12 11 10 44 44 H 1.09007 * 109.87627 * 291.51817 * 12 11 10 45 45 H 1.09002 * 110.95368 * 157.22769 * 17 15 13 46 46 H 1.08997 * 110.95311 * 280.95826 * 17 15 13 47 47 H 1.09004 * 109.92229 * 218.17378 * 18 17 15 48 48 H 1.09003 * 110.08865 * 96.96656 * 18 17 15 49 49 H 0.97001 * 119.99831 * 180.02562 * 23 22 20 50 50 H 1.08998 * 110.07255 * 112.84272 * 28 10 8 51 51 H 1.09000 * 110.15542 * 351.31872 * 28 10 8 52 52 H 1.07997 * 125.89942 * 180.26378 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5453 -0.0072 6 6 4.6687 2.5633 1.1307 7 6 4.8622 2.2827 -1.3444 8 6 5.9973 0.6950 0.1853 9 8 6.8943 0.7325 -0.6300 10 7 6.0997 -0.1073 1.2634 11 6 5.0554 -0.0780 2.2919 12 6 4.6145 -1.5074 2.6561 13 6 5.8677 -2.3021 2.9638 14 1 6.4488 -1.7775 3.7221 15 6 6.7021 -2.3984 1.6568 16 1 6.0945 -2.7409 0.8191 17 6 7.7464 -3.4458 2.0764 18 6 6.8890 -4.4326 2.9145 19 7 5.6967 -3.6857 3.3790 20 6 4.6330 -4.2013 4.0703 21 1 3.8146 -3.5589 4.3597 22 6 4.6068 -5.5497 4.3991 23 7 5.6041 -6.3327 4.0459 24 14 3.1555 -6.2532 5.3414 25 1 2.1228 -6.7217 4.3827 26 1 3.6124 -7.3949 6.1740 27 1 2.5775 -5.2022 6.2171 28 6 7.2633 -1.0072 1.3977 29 6 3.5347 -0.7321 0.0036 30 7 2.2891 -1.1328 0.0056 31 1 -0.3633 0.0047 1.0276 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3633 -0.8923 -0.5099 34 1 1.9281 2.1193 -0.0004 35 1 5.4814 3.2845 1.0448 36 1 3.7130 3.0838 1.0701 37 1 4.7411 2.0465 2.0877 38 1 4.8135 1.5622 -2.1609 39 1 4.0340 2.9860 -1.4306 40 1 5.8063 2.8252 -1.3944 41 1 5.4421 0.4169 3.1828 42 1 4.1963 0.4778 1.9163 43 1 3.9661 -1.4835 3.5320 44 1 4.0857 -1.9576 1.8159 45 1 8.1722 -3.9426 1.2047 46 1 8.5284 -2.9938 2.6865 47 1 7.4620 -4.7874 3.7713 48 1 6.5812 -5.2775 2.2984 49 1 5.5856 -7.2750 4.2754 50 1 7.8848 -0.6925 2.2361 51 1 7.8479 -1.0051 0.4778 52 1 4.4054 -1.3710 0.0072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036858473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:50 Heat of formation + Delta-G solvation = 92.938084 kcal Electronic energy + Delta-G solvation = -33256.050689 eV Core-core repulsion = 29258.952669 eV Total energy + Delta-G solvation = -3997.098020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.87159 -40.09197 -38.38054 -35.70602 -35.16785 -33.02488 -32.56650 -31.47102 -29.62113 -29.43096 -28.26451 -27.27715 -26.73661 -25.08665 -24.10251 -22.49010 -22.25753 -21.30832 -20.34501 -20.02014 -19.40346 -18.64778 -17.48427 -16.42934 -16.08357 -15.69146 -15.45565 -15.16365 -15.00832 -14.50544 -14.32152 -14.05633 -13.84661 -13.78947 -13.58468 -13.18081 -12.94275 -12.89932 -12.64861 -12.52798 -12.41485 -12.29731 -12.22280 -11.86095 -11.69992 -11.56318 -11.47153 -11.36664 -11.10401 -10.79076 -10.70243 -10.62384 -10.44228 -10.11644 -10.03407 -9.83614 -9.57884 -9.48390 -9.38576 -9.35348 -8.57969 -8.41258 -8.35701 -6.78444 -5.67271 -2.99753 1.81255 2.42762 2.72752 2.79427 3.16420 3.42024 3.46687 3.48495 4.32515 4.44314 4.52987 4.69179 4.80691 4.94713 4.97439 5.00600 5.11072 5.17724 5.23880 5.27384 5.32506 5.41835 5.46606 5.54551 5.59118 5.63644 5.67616 5.69878 5.72998 5.82613 5.88650 5.93462 6.01620 6.04224 6.10453 6.20073 6.23466 6.27436 6.31817 6.43262 6.56489 6.57918 6.66989 6.72165 6.89931 6.91451 7.13431 7.58748 7.60633 7.66188 7.67135 7.85638 8.29100 8.33524 9.24068 9.87738 10.55885 11.45322 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.004239 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.476758 B = 6603.347464 C = 8373.555201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.377 5.377 3 C 0.062 3.938 4 C -0.231 4.231 5 C 0.000 4.000 6 C -0.151 4.151 7 C -0.121 4.121 8 C 0.525 3.475 9 O -0.545 6.545 10 N -0.602 5.602 11 C 0.096 3.904 12 C -0.134 4.134 13 C 0.169 3.831 14 H 0.018 0.982 15 C -0.124 4.124 16 H 0.077 0.923 17 C -0.135 4.135 18 C 0.177 3.823 19 N -0.594 5.594 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.124 3.876 29 C 0.065 3.935 30 N -0.282 5.282 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.037 0.963 48 H 0.055 0.945 49 H 0.251 0.749 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 19.460 -8.074 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.084 4.084 4 C -0.243 4.243 5 C -0.004 4.004 6 C -0.208 4.208 7 C -0.178 4.178 8 C 0.313 3.687 9 O -0.423 6.423 10 N -0.334 5.334 11 C -0.027 4.027 12 C -0.173 4.173 13 C 0.061 3.939 14 H 0.035 0.965 15 C -0.144 4.144 16 H 0.096 0.904 17 C -0.174 4.174 18 C 0.052 3.948 19 N -0.319 5.319 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.003 3.997 29 C -0.121 4.121 30 N -0.102 5.102 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.189 0.811 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.107 0.893 52 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.480 18.227 -8.367 21.076 hybrid contribution -0.367 0.115 0.710 0.808 sum -6.847 18.341 -7.656 21.021 Atomic orbital electron populations 1.21835 0.74282 1.04311 1.03448 1.48495 1.06630 1.03855 1.56922 1.22083 0.90436 0.93326 1.02596 1.19590 0.93321 0.93599 1.17796 1.19019 0.89669 0.93760 0.97978 1.22188 1.02557 0.98231 0.97852 1.21654 1.01827 0.99631 0.94730 1.20402 0.87771 0.79878 0.80685 1.90654 1.41152 1.66702 1.43792 1.48273 1.23433 1.39976 1.21739 1.22279 0.91026 0.98825 0.90532 1.22029 0.99356 0.93611 1.02292 1.20637 0.93271 0.87746 0.92276 0.96473 1.22632 0.98842 0.93406 0.99538 0.90419 1.22693 0.97263 0.97579 0.99832 1.21529 0.85918 0.91825 0.95478 1.44208 1.20513 1.02683 1.64455 1.18966 0.96648 0.92298 1.27035 0.90554 1.24760 0.98060 0.96255 1.01322 1.69938 1.31041 1.04773 1.51190 0.86181 0.81949 0.78647 0.79372 1.21695 1.21748 1.20823 1.21625 0.87235 0.88442 1.02435 1.23998 0.95517 0.94261 0.98356 1.77569 1.01441 1.07480 1.23753 0.90674 0.89712 0.89251 0.81076 0.91833 0.91603 0.90861 0.92130 0.92390 0.91637 0.92151 0.88172 0.91132 0.90518 0.92082 0.92328 0.94473 0.92701 0.93843 0.91436 0.89286 0.80097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.47 59.84 0.69 1.40 16 2 N -0.38 -4.22 4.01 -68.16 -0.27 -4.49 16 3 C 0.06 0.59 10.72 -17.22 -0.18 0.41 16 4 C -0.23 -2.71 2.88 -105.05 -0.30 -3.02 16 5 C 0.00 0.00 0.67 -156.81 -0.11 -0.10 16 6 C -0.15 -1.34 8.04 37.16 0.30 -1.04 16 7 C -0.12 -1.25 7.84 37.16 0.29 -0.96 16 8 C 0.53 7.64 5.71 -10.98 -0.06 7.57 16 9 O -0.55 -9.53 15.23 5.56 0.08 -9.44 16 10 N -0.60 -8.70 2.22 -172.48 -0.38 -9.08 16 11 C 0.10 1.33 3.55 -3.49 -0.01 1.32 16 12 C -0.13 -2.34 5.06 -26.97 -0.14 -2.48 16 13 C 0.17 3.39 2.55 -67.97 -0.17 3.22 16 14 H 0.02 0.37 7.94 -51.93 -0.41 -0.04 16 15 C -0.12 -2.21 2.86 -89.37 -0.26 -2.47 16 16 H 0.08 1.50 7.82 -51.92 -0.41 1.09 16 17 C -0.13 -2.53 6.54 -25.13 -0.16 -2.69 16 18 C 0.18 4.29 5.46 -1.92 -0.01 4.28 16 19 N -0.59 -14.92 3.35 -163.08 -0.55 -15.46 16 20 C -0.22 -6.09 9.88 -15.06 -0.15 -6.24 16 21 H 0.08 2.04 7.21 -52.49 -0.38 1.66 16 22 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.21 10.43 55.49 0.58 -26.63 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.12 1.92 5.94 -3.77 -0.02 1.90 16 29 C 0.07 0.96 7.32 -17.36 -0.13 0.83 16 30 N -0.28 -4.30 12.58 30.62 0.39 -3.92 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.17 0.99 7.81 -52.49 -0.41 0.58 16 35 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 36 H 0.06 0.44 7.44 -51.93 -0.39 0.05 16 37 H 0.07 0.69 4.94 -51.93 -0.26 0.43 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.71 7.84 -51.93 -0.41 0.31 16 41 H 0.06 0.78 7.95 -51.92 -0.41 0.37 16 42 H 0.10 1.26 3.07 -51.93 -0.16 1.10 16 43 H 0.07 1.30 7.62 -51.93 -0.40 0.90 16 44 H 0.08 1.45 5.38 -51.92 -0.28 1.17 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 47 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 48 H 0.05 1.49 7.20 -51.93 -0.37 1.11 16 49 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 51 H 0.09 1.41 7.03 -51.93 -0.37 1.04 16 52 H 0.18 2.98 5.81 -52.49 -0.30 2.68 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -33.72 384.99 -8.19 -41.91 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.29 Total: 2.42 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.53 Total: 1.62 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.24 Total: -59.59 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.72 -8.19 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036858473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.847 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds