Wall clock time and date at job start Wed Apr 1 2020 05:22:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.34953 * 126.03817 * 2 1
4 4 C 1.35319 * 107.74479 * 180.14613 * 3 2 1
5 5 C 1.50701 * 126.03578 * 179.87474 * 4 3 2
6 6 C 1.52999 * 109.47329 * 52.09714 * 5 4 3
7 7 C 1.53003 * 109.47138 * 292.09348 * 5 4 3
8 8 C 1.50707 * 109.46979 * 172.09956 * 5 4 3
9 9 O 1.21274 * 120.00490 * 123.78271 * 8 5 4
10 10 N 1.34776 * 119.99751 * 303.78619 * 8 5 4
11 11 C 1.46601 * 119.68259 * 355.73283 * 10 8 5
12 12 C 1.53960 * 110.57715 * 132.17705 * 11 10 8
13 13 C 1.51542 * 107.34039 * 51.04232 * 12 11 10
14 14 H 1.08998 * 109.25587 * 53.72275 * 13 12 11
15 15 C 1.55356 * 107.81288 * 295.16486 * 13 12 11
16 16 H 1.09007 * 111.51082 * 309.57755 * 15 13 12
17 17 C 1.53741 * 100.22376 * 190.89768 * 15 13 12
18 18 C 1.55288 * 101.83973 * 39.09112 * 17 15 13
19 19 N 1.45470 * 117.35689 * 178.09203 * 13 12 11
20 20 C 1.36939 * 126.40704 * 329.38783 * 19 13 12
21 21 H 1.07990 * 119.99889 * 359.97438 * 20 19 13
22 22 C 1.38814 * 119.99737 * 179.97438 * 20 19 13
23 23 N 1.31620 * 120.00055 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 119.99890 * 180.02562 * 22 20 19
25 25 H 1.48493 * 109.47480 * 89.99776 * 24 22 20
26 26 H 1.48501 * 109.47001 * 210.00413 * 24 22 20
27 27 H 1.48508 * 109.46896 * 329.99539 * 24 22 20
28 28 C 1.47715 * 119.68741 * 175.75465 * 10 8 5
29 29 C 1.39868 * 107.92241 * 359.61263 * 4 3 2
30 30 N 1.30844 * 108.20091 * 0.23823 * 29 4 3
31 31 H 1.08999 * 109.47070 * 270.26302 * 1 2 3
32 32 H 1.09001 * 109.47064 * 30.26111 * 1 2 3
33 33 H 1.09000 * 109.46805 * 150.25450 * 1 2 3
34 34 H 1.07997 * 126.12648 * 359.97438 * 3 2 1
35 35 H 1.08995 * 109.46729 * 187.79980 * 6 5 4
36 36 H 1.08997 * 109.46819 * 307.79869 * 6 5 4
37 37 H 1.08998 * 109.46600 * 67.80147 * 6 5 4
38 38 H 1.08998 * 109.47176 * 306.67968 * 7 5 4
39 39 H 1.08996 * 109.46781 * 66.68049 * 7 5 4
40 40 H 1.08999 * 109.46950 * 186.67672 * 7 5 4
41 41 H 1.09007 * 109.25406 * 252.45435 * 11 10 8
42 42 H 1.08997 * 109.26123 * 11.92907 * 11 10 8
43 43 H 1.08995 * 109.88006 * 170.51547 * 12 11 10
44 44 H 1.09007 * 109.87627 * 291.51817 * 12 11 10
45 45 H 1.09002 * 110.95368 * 157.22769 * 17 15 13
46 46 H 1.08997 * 110.95311 * 280.95826 * 17 15 13
47 47 H 1.09004 * 109.92229 * 218.17378 * 18 17 15
48 48 H 1.09003 * 110.08865 * 96.96656 * 18 17 15
49 49 H 0.97001 * 119.99831 * 180.02562 * 23 22 20
50 50 H 1.08998 * 110.07255 * 112.84272 * 28 10 8
51 51 H 1.09000 * 110.15542 * 351.31872 * 28 10 8
52 52 H 1.07997 * 125.89942 * 180.26378 * 29 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2589 1.0913 0.0000
4 6 3.5437 0.6665 -0.0033
5 6 4.7680 1.5453 -0.0072
6 6 4.6687 2.5633 1.1307
7 6 4.8622 2.2827 -1.3444
8 6 5.9973 0.6950 0.1853
9 8 6.8943 0.7325 -0.6300
10 7 6.0997 -0.1073 1.2634
11 6 5.0554 -0.0780 2.2919
12 6 4.6145 -1.5074 2.6561
13 6 5.8677 -2.3021 2.9638
14 1 6.4488 -1.7775 3.7221
15 6 6.7021 -2.3984 1.6568
16 1 6.0945 -2.7409 0.8191
17 6 7.7464 -3.4458 2.0764
18 6 6.8890 -4.4326 2.9145
19 7 5.6967 -3.6857 3.3790
20 6 4.6330 -4.2013 4.0703
21 1 3.8146 -3.5589 4.3597
22 6 4.6068 -5.5497 4.3991
23 7 5.6041 -6.3327 4.0459
24 14 3.1555 -6.2532 5.3414
25 1 2.1228 -6.7217 4.3827
26 1 3.6124 -7.3949 6.1740
27 1 2.5775 -5.2022 6.2171
28 6 7.2633 -1.0072 1.3977
29 6 3.5347 -0.7321 0.0036
30 7 2.2891 -1.1328 0.0056
31 1 -0.3633 0.0047 1.0276
32 1 -0.3633 0.8876 -0.5179
33 1 -0.3633 -0.8923 -0.5099
34 1 1.9281 2.1193 -0.0004
35 1 5.4814 3.2845 1.0448
36 1 3.7130 3.0838 1.0701
37 1 4.7411 2.0465 2.0877
38 1 4.8135 1.5622 -2.1609
39 1 4.0340 2.9860 -1.4306
40 1 5.8063 2.8252 -1.3944
41 1 5.4421 0.4169 3.1828
42 1 4.1963 0.4778 1.9163
43 1 3.9661 -1.4835 3.5320
44 1 4.0857 -1.9576 1.8159
45 1 8.1722 -3.9426 1.2047
46 1 8.5284 -2.9938 2.6865
47 1 7.4620 -4.7874 3.7713
48 1 6.5812 -5.2775 2.2984
49 1 5.5856 -7.2750 4.2754
50 1 7.8848 -0.6925 2.2361
51 1 7.8479 -1.0051 0.4778
52 1 4.4054 -1.3710 0.0072
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036858473.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:22:48
Heat of formation + Delta-G solvation = 71.470694 kcal
Electronic energy + Delta-G solvation = -33256.981585 eV
Core-core repulsion = 29258.952669 eV
Total energy + Delta-G solvation = -3998.028916 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.94 seconds
Orbital eigenvalues (eV)
-42.83385 -41.25365 -39.85497 -36.93435 -36.38947 -34.43989 -33.83480 -32.98994
-31.31573 -30.31990 -29.79048 -28.02818 -27.55412 -26.76789 -25.61226 -23.76469
-23.50184 -22.36241 -21.86047 -21.29395 -20.83215 -19.73518 -18.73827 -18.04834
-17.25194 -16.96400 -16.68895 -16.30793 -16.23839 -16.02511 -15.67921 -15.36426
-15.15434 -14.88970 -14.76161 -14.49520 -14.08048 -13.96656 -13.84560 -13.59716
-13.41153 -13.34633 -13.17814 -13.12719 -13.03152 -12.94429 -12.75015 -12.68439
-12.52862 -12.40326 -12.06840 -12.04356 -11.90886 -11.75429 -11.58377 -11.49733
-11.33906 -10.98966 -10.71554 -10.57734 -10.30832 -9.63682 -9.22934 -8.86456
-7.83468 -5.17281 0.99733 1.42723 1.45106 1.52957 1.58642 1.75797
1.78992 2.03036 2.49597 3.34973 3.37517 3.49598 3.64164 3.83615
3.87256 4.00141 4.03550 4.11355 4.19568 4.22233 4.23794 4.30362
4.34525 4.41824 4.50568 4.52192 4.65524 4.71189 4.75397 4.79833
4.82605 4.85829 4.88494 4.89740 4.92266 4.99692 5.04998 5.07762
5.08514 5.17649 5.24769 5.35692 5.42881 5.48173 5.53135 5.57824
5.61104 5.66863 5.76776 6.20731 6.21061 6.44977 6.75331 7.09724
7.19419 7.79993 8.48711 9.28372
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.011480 B = 0.004239 C = 0.003343
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2438.476758 B = 6603.347464 C = 8373.555201
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.093 3.907
2 N -0.375 5.375
3 C 0.087 3.913
4 C -0.244 4.244
5 C 0.008 3.992
6 C -0.149 4.149
7 C -0.117 4.117
8 C 0.521 3.479
9 O -0.579 6.579
10 N -0.602 5.602
11 C 0.110 3.890
12 C -0.124 4.124
13 C 0.161 3.839
14 H 0.021 0.979
15 C -0.107 4.107
16 H 0.057 0.943
17 C -0.120 4.120
18 C 0.183 3.817
19 N -0.615 5.615
20 C -0.226 4.226
21 H 0.081 0.919
22 C -0.069 4.069
23 N -0.953 5.953
24 Si 0.972 3.028
25 H -0.291 1.291
26 H -0.295 1.295
27 H -0.267 1.267
28 C 0.133 3.867
29 C 0.048 3.952
30 N -0.335 5.335
31 H 0.084 0.916
32 H 0.126 0.874
33 H 0.080 0.920
34 H 0.224 0.776
35 H 0.068 0.932
36 H 0.099 0.901
37 H 0.067 0.933
38 H 0.037 0.963
39 H 0.093 0.907
40 H 0.057 0.943
41 H 0.078 0.922
42 H 0.121 0.879
43 H 0.060 0.940
44 H 0.058 0.942
45 H 0.076 0.924
46 H 0.080 0.920
47 H 0.005 0.995
48 H 0.015 0.985
49 H 0.244 0.756
50 H 0.083 0.917
51 H 0.087 0.913
52 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.857 23.735 -8.039 26.262
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.047 4.047
2 N -0.156 5.156
3 C -0.060 4.060
4 C -0.256 4.256
5 C 0.003 3.997
6 C -0.206 4.206
7 C -0.175 4.175
8 C 0.310 3.690
9 O -0.459 6.459
10 N -0.334 5.334
11 C -0.013 4.013
12 C -0.163 4.163
13 C 0.054 3.946
14 H 0.038 0.962
15 C -0.128 4.128
16 H 0.076 0.924
17 C -0.159 4.159
18 C 0.058 3.942
19 N -0.339 5.339
20 C -0.355 4.355
21 H 0.099 0.901
22 C -0.261 4.261
23 N -0.603 5.603
24 Si 0.801 3.199
25 H -0.218 1.218
26 H -0.221 1.221
27 H -0.192 1.192
28 C 0.010 3.990
29 C -0.137 4.137
30 N -0.156 5.156
31 H 0.103 0.897
32 H 0.144 0.856
33 H 0.099 0.901
34 H 0.240 0.760
35 H 0.087 0.913
36 H 0.118 0.882
37 H 0.086 0.914
38 H 0.056 0.944
39 H 0.112 0.888
40 H 0.076 0.924
41 H 0.097 0.903
42 H 0.138 0.862
43 H 0.079 0.921
44 H 0.077 0.923
45 H 0.095 0.905
46 H 0.099 0.901
47 H 0.023 0.977
48 H 0.034 0.966
49 H 0.054 0.946
50 H 0.102 0.898
51 H 0.105 0.895
52 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -8.449 22.538 -8.330 25.470
hybrid contribution 0.178 -1.213 0.642 1.384
sum -8.271 21.325 -7.688 24.130
Atomic orbital electron populations
1.22213 0.71941 1.05947 1.04618 1.48826 1.07932 1.03270 1.55594
1.22774 0.89093 0.94809 0.99323 1.19627 0.94624 0.92112 1.19263
1.19042 0.87425 0.93585 0.99626 1.22218 1.04738 0.97567 0.96076
1.21656 1.02960 0.99510 0.93347 1.21131 0.88521 0.79702 0.79646
1.90635 1.42747 1.67887 1.44655 1.48281 1.23117 1.39762 1.22206
1.22257 0.91676 0.96246 0.91087 1.21903 0.97724 0.95598 1.01090
1.20851 0.95122 0.85617 0.92998 0.96177 1.22441 0.97842 0.94864
0.97630 0.92430 1.22570 0.97030 0.96564 0.99746 1.21296 0.86283
0.92348 0.94305 1.44492 1.20140 1.04895 1.64393 1.19324 0.97249
0.92571 1.26345 0.90102 1.25581 1.00726 0.96812 1.03005 1.70165
1.32920 1.04478 1.52734 0.85169 0.78808 0.77896 0.78075 1.21790
1.22148 1.19163 1.21476 0.87725 0.86861 1.02921 1.23684 0.94743
0.95579 0.99693 1.77476 1.02236 1.10190 1.25743 0.89719 0.85615
0.90133 0.75984 0.91312 0.88221 0.91407 0.94373 0.88794 0.92378
0.90347 0.86179 0.92119 0.92309 0.90493 0.90115 0.97702 0.96650
0.94640 0.89849 0.89472 0.83182
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.98 11.47 127.77 1.47 2.45 16
2 N -0.37 -7.36 4.01 -369.57 -1.48 -8.84 16
3 C 0.09 1.29 10.72 83.54 0.90 2.18 16
4 C -0.24 -5.13 2.88 -20.14 -0.06 -5.19 16
5 C 0.01 0.15 0.67 -53.67 -0.04 0.11 16
6 C -0.15 -1.95 8.04 71.98 0.58 -1.37 16
7 C -0.12 -2.09 7.84 71.98 0.56 -1.53 16
8 C 0.52 14.54 5.71 87.66 0.50 15.05 16
9 O -0.58 -20.02 15.23 -3.01 -0.05 -20.07 16
10 N -0.60 -16.81 2.22 -818.01 -1.81 -18.62 16
11 C 0.11 2.85 3.55 86.68 0.31 3.16 16
12 C -0.12 -4.36 5.06 30.44 0.15 -4.21 16
13 C 0.16 6.57 2.55 45.52 0.12 6.68 16
14 H 0.02 0.84 7.94 -2.39 -0.02 0.83 16
15 C -0.11 -3.91 2.86 -9.99 -0.03 -3.94 16
16 H 0.06 2.34 7.82 -2.38 -0.02 2.32 16
17 C -0.12 -4.59 6.54 31.63 0.21 -4.39 16
18 C 0.18 9.36 5.46 86.85 0.47 9.83 16
19 N -0.61 -32.10 3.35 -669.88 -2.24 -34.34 16
20 C -0.23 -12.83 9.88 84.03 0.83 -12.00 16
21 H 0.08 4.40 7.21 -2.92 -0.02 4.38 16
22 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16
23 N -0.95 -59.12 10.43 21.65 0.23 -58.89 16
24 Si 0.97 47.06 29.55 68.60 2.03 49.09 16
25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16
26 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16
27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
28 C 0.13 4.00 5.94 85.89 0.51 4.51 16
29 C 0.05 1.43 7.32 85.23 0.62 2.05 16
30 N -0.33 -10.18 12.58 -57.02 -0.72 -10.90 16
31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
32 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16
33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.22 0.89 7.81 -2.91 -0.02 0.86 16
35 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16
36 H 0.10 0.66 7.44 -2.39 -0.02 0.64 16
37 H 0.07 0.98 4.94 -2.39 -0.01 0.97 16
38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16
39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
40 H 0.06 1.13 7.84 -2.39 -0.02 1.11 16
41 H 0.08 1.80 7.95 -2.38 -0.02 1.79 16
42 H 0.12 2.71 3.07 -2.39 -0.01 2.70 16
43 H 0.06 2.23 7.62 -2.39 -0.02 2.21 16
44 H 0.06 2.31 5.38 -2.38 -0.01 2.30 16
45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16
46 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16
47 H 0.00 0.27 7.77 -2.38 -0.02 0.25 16
48 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16
49 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16
50 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16
51 H 0.09 2.72 7.03 -2.39 -0.02 2.70 16
52 H 0.15 5.26 5.81 -2.91 -0.02 5.24 16
Total: -1.00 -79.97 384.99 4.44 -75.53
By element:
Atomic # 1 Polarization: 16.28 SS G_CDS: 0.92 Total: 17.20 kcal
Atomic # 6 Polarization: 2.28 SS G_CDS: 7.57 Total: 9.85 kcal
Atomic # 7 Polarization: -125.57 SS G_CDS: -6.03 Total: -131.60 kcal
Atomic # 8 Polarization: -20.02 SS G_CDS: -0.05 Total: -20.07 kcal
Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal
Total: -79.97 4.44 -75.53 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036858473.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.997 kcal
(2) G-P(sol) polarization free energy of solvation -79.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.526 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.95 seconds