Wall clock time and date at job start Wed Apr 1 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34953 * 126.03817 * 2 1 4 4 C 1.35319 * 107.74479 * 180.14613 * 3 2 1 5 5 C 1.50701 * 126.03578 * 179.87474 * 4 3 2 6 6 C 1.52999 * 109.47329 * 52.09714 * 5 4 3 7 7 C 1.53003 * 109.47138 * 292.09348 * 5 4 3 8 8 C 1.50707 * 109.46979 * 172.09956 * 5 4 3 9 9 O 1.21274 * 120.00490 * 123.78271 * 8 5 4 10 10 N 1.34776 * 119.99751 * 303.78619 * 8 5 4 11 11 C 1.46601 * 119.68259 * 355.73283 * 10 8 5 12 12 C 1.53960 * 110.57715 * 132.17705 * 11 10 8 13 13 C 1.51542 * 107.34039 * 51.04232 * 12 11 10 14 14 H 1.08998 * 109.25587 * 53.72275 * 13 12 11 15 15 C 1.55356 * 107.81288 * 295.16486 * 13 12 11 16 16 H 1.09007 * 111.51082 * 309.57755 * 15 13 12 17 17 C 1.53741 * 100.22376 * 190.89768 * 15 13 12 18 18 C 1.55288 * 101.83973 * 39.09112 * 17 15 13 19 19 N 1.45470 * 117.35689 * 178.09203 * 13 12 11 20 20 C 1.36939 * 126.40704 * 329.38783 * 19 13 12 21 21 H 1.07990 * 119.99889 * 359.97438 * 20 19 13 22 22 C 1.38814 * 119.99737 * 179.97438 * 20 19 13 23 23 N 1.31620 * 120.00055 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47480 * 89.99776 * 24 22 20 26 26 H 1.48501 * 109.47001 * 210.00413 * 24 22 20 27 27 H 1.48508 * 109.46896 * 329.99539 * 24 22 20 28 28 C 1.47715 * 119.68741 * 175.75465 * 10 8 5 29 29 C 1.39868 * 107.92241 * 359.61263 * 4 3 2 30 30 N 1.30844 * 108.20091 * 0.23823 * 29 4 3 31 31 H 1.08999 * 109.47070 * 270.26302 * 1 2 3 32 32 H 1.09001 * 109.47064 * 30.26111 * 1 2 3 33 33 H 1.09000 * 109.46805 * 150.25450 * 1 2 3 34 34 H 1.07997 * 126.12648 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.46729 * 187.79980 * 6 5 4 36 36 H 1.08997 * 109.46819 * 307.79869 * 6 5 4 37 37 H 1.08998 * 109.46600 * 67.80147 * 6 5 4 38 38 H 1.08998 * 109.47176 * 306.67968 * 7 5 4 39 39 H 1.08996 * 109.46781 * 66.68049 * 7 5 4 40 40 H 1.08999 * 109.46950 * 186.67672 * 7 5 4 41 41 H 1.09007 * 109.25406 * 252.45435 * 11 10 8 42 42 H 1.08997 * 109.26123 * 11.92907 * 11 10 8 43 43 H 1.08995 * 109.88006 * 170.51547 * 12 11 10 44 44 H 1.09007 * 109.87627 * 291.51817 * 12 11 10 45 45 H 1.09002 * 110.95368 * 157.22769 * 17 15 13 46 46 H 1.08997 * 110.95311 * 280.95826 * 17 15 13 47 47 H 1.09004 * 109.92229 * 218.17378 * 18 17 15 48 48 H 1.09003 * 110.08865 * 96.96656 * 18 17 15 49 49 H 0.97001 * 119.99831 * 180.02562 * 23 22 20 50 50 H 1.08998 * 110.07255 * 112.84272 * 28 10 8 51 51 H 1.09000 * 110.15542 * 351.31872 * 28 10 8 52 52 H 1.07997 * 125.89942 * 180.26378 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5453 -0.0072 6 6 4.6687 2.5633 1.1307 7 6 4.8622 2.2827 -1.3444 8 6 5.9973 0.6950 0.1853 9 8 6.8943 0.7325 -0.6300 10 7 6.0997 -0.1073 1.2634 11 6 5.0554 -0.0780 2.2919 12 6 4.6145 -1.5074 2.6561 13 6 5.8677 -2.3021 2.9638 14 1 6.4488 -1.7775 3.7221 15 6 6.7021 -2.3984 1.6568 16 1 6.0945 -2.7409 0.8191 17 6 7.7464 -3.4458 2.0764 18 6 6.8890 -4.4326 2.9145 19 7 5.6967 -3.6857 3.3790 20 6 4.6330 -4.2013 4.0703 21 1 3.8146 -3.5589 4.3597 22 6 4.6068 -5.5497 4.3991 23 7 5.6041 -6.3327 4.0459 24 14 3.1555 -6.2532 5.3414 25 1 2.1228 -6.7217 4.3827 26 1 3.6124 -7.3949 6.1740 27 1 2.5775 -5.2022 6.2171 28 6 7.2633 -1.0072 1.3977 29 6 3.5347 -0.7321 0.0036 30 7 2.2891 -1.1328 0.0056 31 1 -0.3633 0.0047 1.0276 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3633 -0.8923 -0.5099 34 1 1.9281 2.1193 -0.0004 35 1 5.4814 3.2845 1.0448 36 1 3.7130 3.0838 1.0701 37 1 4.7411 2.0465 2.0877 38 1 4.8135 1.5622 -2.1609 39 1 4.0340 2.9860 -1.4306 40 1 5.8063 2.8252 -1.3944 41 1 5.4421 0.4169 3.1828 42 1 4.1963 0.4778 1.9163 43 1 3.9661 -1.4835 3.5320 44 1 4.0857 -1.9576 1.8159 45 1 8.1722 -3.9426 1.2047 46 1 8.5284 -2.9938 2.6865 47 1 7.4620 -4.7874 3.7713 48 1 6.5812 -5.2775 2.2984 49 1 5.5856 -7.2750 4.2754 50 1 7.8848 -0.6925 2.2361 51 1 7.8479 -1.0051 0.4778 52 1 4.4054 -1.3710 0.0072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036858473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:48 Heat of formation + Delta-G solvation = 71.470694 kcal Electronic energy + Delta-G solvation = -33256.981585 eV Core-core repulsion = 29258.952669 eV Total energy + Delta-G solvation = -3998.028916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.83385 -41.25365 -39.85497 -36.93435 -36.38947 -34.43989 -33.83480 -32.98994 -31.31573 -30.31990 -29.79048 -28.02818 -27.55412 -26.76789 -25.61226 -23.76469 -23.50184 -22.36241 -21.86047 -21.29395 -20.83215 -19.73518 -18.73827 -18.04834 -17.25194 -16.96400 -16.68895 -16.30793 -16.23839 -16.02511 -15.67921 -15.36426 -15.15434 -14.88970 -14.76161 -14.49520 -14.08048 -13.96656 -13.84560 -13.59716 -13.41153 -13.34633 -13.17814 -13.12719 -13.03152 -12.94429 -12.75015 -12.68439 -12.52862 -12.40326 -12.06840 -12.04356 -11.90886 -11.75429 -11.58377 -11.49733 -11.33906 -10.98966 -10.71554 -10.57734 -10.30832 -9.63682 -9.22934 -8.86456 -7.83468 -5.17281 0.99733 1.42723 1.45106 1.52957 1.58642 1.75797 1.78992 2.03036 2.49597 3.34973 3.37517 3.49598 3.64164 3.83615 3.87256 4.00141 4.03550 4.11355 4.19568 4.22233 4.23794 4.30362 4.34525 4.41824 4.50568 4.52192 4.65524 4.71189 4.75397 4.79833 4.82605 4.85829 4.88494 4.89740 4.92266 4.99692 5.04998 5.07762 5.08514 5.17649 5.24769 5.35692 5.42881 5.48173 5.53135 5.57824 5.61104 5.66863 5.76776 6.20731 6.21061 6.44977 6.75331 7.09724 7.19419 7.79993 8.48711 9.28372 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011480 B = 0.004239 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.476758 B = 6603.347464 C = 8373.555201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.375 5.375 3 C 0.087 3.913 4 C -0.244 4.244 5 C 0.008 3.992 6 C -0.149 4.149 7 C -0.117 4.117 8 C 0.521 3.479 9 O -0.579 6.579 10 N -0.602 5.602 11 C 0.110 3.890 12 C -0.124 4.124 13 C 0.161 3.839 14 H 0.021 0.979 15 C -0.107 4.107 16 H 0.057 0.943 17 C -0.120 4.120 18 C 0.183 3.817 19 N -0.615 5.615 20 C -0.226 4.226 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.972 3.028 25 H -0.291 1.291 26 H -0.295 1.295 27 H -0.267 1.267 28 C 0.133 3.867 29 C 0.048 3.952 30 N -0.335 5.335 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.224 0.776 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.037 0.963 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.005 0.995 48 H 0.015 0.985 49 H 0.244 0.756 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.857 23.735 -8.039 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.156 5.156 3 C -0.060 4.060 4 C -0.256 4.256 5 C 0.003 3.997 6 C -0.206 4.206 7 C -0.175 4.175 8 C 0.310 3.690 9 O -0.459 6.459 10 N -0.334 5.334 11 C -0.013 4.013 12 C -0.163 4.163 13 C 0.054 3.946 14 H 0.038 0.962 15 C -0.128 4.128 16 H 0.076 0.924 17 C -0.159 4.159 18 C 0.058 3.942 19 N -0.339 5.339 20 C -0.355 4.355 21 H 0.099 0.901 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.801 3.199 25 H -0.218 1.218 26 H -0.221 1.221 27 H -0.192 1.192 28 C 0.010 3.990 29 C -0.137 4.137 30 N -0.156 5.156 31 H 0.103 0.897 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.138 0.862 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.023 0.977 48 H 0.034 0.966 49 H 0.054 0.946 50 H 0.102 0.898 51 H 0.105 0.895 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.449 22.538 -8.330 25.470 hybrid contribution 0.178 -1.213 0.642 1.384 sum -8.271 21.325 -7.688 24.130 Atomic orbital electron populations 1.22213 0.71941 1.05947 1.04618 1.48826 1.07932 1.03270 1.55594 1.22774 0.89093 0.94809 0.99323 1.19627 0.94624 0.92112 1.19263 1.19042 0.87425 0.93585 0.99626 1.22218 1.04738 0.97567 0.96076 1.21656 1.02960 0.99510 0.93347 1.21131 0.88521 0.79702 0.79646 1.90635 1.42747 1.67887 1.44655 1.48281 1.23117 1.39762 1.22206 1.22257 0.91676 0.96246 0.91087 1.21903 0.97724 0.95598 1.01090 1.20851 0.95122 0.85617 0.92998 0.96177 1.22441 0.97842 0.94864 0.97630 0.92430 1.22570 0.97030 0.96564 0.99746 1.21296 0.86283 0.92348 0.94305 1.44492 1.20140 1.04895 1.64393 1.19324 0.97249 0.92571 1.26345 0.90102 1.25581 1.00726 0.96812 1.03005 1.70165 1.32920 1.04478 1.52734 0.85169 0.78808 0.77896 0.78075 1.21790 1.22148 1.19163 1.21476 0.87725 0.86861 1.02921 1.23684 0.94743 0.95579 0.99693 1.77476 1.02236 1.10190 1.25743 0.89719 0.85615 0.90133 0.75984 0.91312 0.88221 0.91407 0.94373 0.88794 0.92378 0.90347 0.86179 0.92119 0.92309 0.90493 0.90115 0.97702 0.96650 0.94640 0.89849 0.89472 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.47 127.77 1.47 2.45 16 2 N -0.37 -7.36 4.01 -369.57 -1.48 -8.84 16 3 C 0.09 1.29 10.72 83.54 0.90 2.18 16 4 C -0.24 -5.13 2.88 -20.14 -0.06 -5.19 16 5 C 0.01 0.15 0.67 -53.67 -0.04 0.11 16 6 C -0.15 -1.95 8.04 71.98 0.58 -1.37 16 7 C -0.12 -2.09 7.84 71.98 0.56 -1.53 16 8 C 0.52 14.54 5.71 87.66 0.50 15.05 16 9 O -0.58 -20.02 15.23 -3.01 -0.05 -20.07 16 10 N -0.60 -16.81 2.22 -818.01 -1.81 -18.62 16 11 C 0.11 2.85 3.55 86.68 0.31 3.16 16 12 C -0.12 -4.36 5.06 30.44 0.15 -4.21 16 13 C 0.16 6.57 2.55 45.52 0.12 6.68 16 14 H 0.02 0.84 7.94 -2.39 -0.02 0.83 16 15 C -0.11 -3.91 2.86 -9.99 -0.03 -3.94 16 16 H 0.06 2.34 7.82 -2.38 -0.02 2.32 16 17 C -0.12 -4.59 6.54 31.63 0.21 -4.39 16 18 C 0.18 9.36 5.46 86.85 0.47 9.83 16 19 N -0.61 -32.10 3.35 -669.88 -2.24 -34.34 16 20 C -0.23 -12.83 9.88 84.03 0.83 -12.00 16 21 H 0.08 4.40 7.21 -2.92 -0.02 4.38 16 22 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 23 N -0.95 -59.12 10.43 21.65 0.23 -58.89 16 24 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C 0.13 4.00 5.94 85.89 0.51 4.51 16 29 C 0.05 1.43 7.32 85.23 0.62 2.05 16 30 N -0.33 -10.18 12.58 -57.02 -0.72 -10.90 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.22 0.89 7.81 -2.91 -0.02 0.86 16 35 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 36 H 0.10 0.66 7.44 -2.39 -0.02 0.64 16 37 H 0.07 0.98 4.94 -2.39 -0.01 0.97 16 38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.13 7.84 -2.39 -0.02 1.11 16 41 H 0.08 1.80 7.95 -2.38 -0.02 1.79 16 42 H 0.12 2.71 3.07 -2.39 -0.01 2.70 16 43 H 0.06 2.23 7.62 -2.39 -0.02 2.21 16 44 H 0.06 2.31 5.38 -2.38 -0.01 2.30 16 45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 47 H 0.00 0.27 7.77 -2.38 -0.02 0.25 16 48 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 49 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 50 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16 51 H 0.09 2.72 7.03 -2.39 -0.02 2.70 16 52 H 0.15 5.26 5.81 -2.91 -0.02 5.24 16 Total: -1.00 -79.97 384.99 4.44 -75.53 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.92 Total: 17.20 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.57 Total: 9.85 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -6.03 Total: -131.60 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.05 Total: -20.07 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -79.97 4.44 -75.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036858473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.997 kcal (2) G-P(sol) polarization free energy of solvation -79.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds