Wall clock time and date at job start Wed Apr 1 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03462 * 2 1 4 4 C 1.35315 * 107.74610 * 180.14594 * 3 2 1 5 5 C 1.50700 * 126.03978 * 179.87234 * 4 3 2 6 6 C 1.53005 * 109.46985 * 65.17675 * 5 4 3 7 7 C 1.52994 * 109.47476 * 305.17406 * 5 4 3 8 8 C 1.50700 * 109.47017 * 185.17397 * 5 4 3 9 9 O 1.21286 * 120.00191 * 244.87841 * 8 5 4 10 10 N 1.34781 * 120.00147 * 64.88307 * 8 5 4 11 11 C 1.46596 * 119.67901 * 354.36683 * 10 8 5 12 12 C 1.53963 * 110.57319 * 227.82868 * 11 10 8 13 13 C 1.51540 * 107.34153 * 308.95073 * 12 11 10 14 14 H 1.09000 * 109.25949 * 306.28802 * 13 12 11 15 15 C 1.55368 * 107.80605 * 64.83959 * 13 12 11 16 16 H 1.08994 * 111.51273 * 50.42385 * 15 13 12 17 17 C 1.53743 * 100.21998 * 169.10403 * 15 13 12 18 18 C 1.55294 * 101.84364 * 320.90792 * 17 15 13 19 19 N 1.45466 * 117.36345 * 181.90755 * 13 12 11 20 20 C 1.36936 * 126.40313 * 30.57820 * 19 13 12 21 21 H 1.08002 * 120.00126 * 0.02562 * 20 19 13 22 22 C 1.38814 * 120.00133 * 180.02562 * 20 19 13 23 23 N 1.31620 * 119.99946 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00132 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46948 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47142 * 119.99536 * 24 22 20 27 27 H 1.48499 * 109.46801 * 239.99926 * 24 22 20 28 28 C 1.47714 * 119.68513 * 174.34653 * 10 8 5 29 29 C 1.39872 * 107.92150 * 359.61030 * 4 3 2 30 30 N 1.30838 * 108.20091 * 0.24488 * 29 4 3 31 31 H 1.09001 * 109.47247 * 270.25575 * 1 2 3 32 32 H 1.08995 * 109.47231 * 30.26217 * 1 2 3 33 33 H 1.09006 * 109.46559 * 150.26485 * 1 2 3 34 34 H 1.07998 * 126.12836 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.46814 * 175.00708 * 6 5 4 36 36 H 1.09002 * 109.46952 * 295.00794 * 6 5 4 37 37 H 1.08999 * 109.46950 * 55.01039 * 6 5 4 38 38 H 1.08999 * 109.46992 * 305.13213 * 7 5 4 39 39 H 1.09007 * 109.46589 * 65.12735 * 7 5 4 40 40 H 1.08994 * 109.47420 * 185.12666 * 7 5 4 41 41 H 1.08996 * 109.25730 * 348.10906 * 11 10 8 42 42 H 1.08999 * 109.25877 * 107.54406 * 11 10 8 43 43 H 1.08997 * 109.88152 * 68.40671 * 12 11 10 44 44 H 1.09000 * 109.88030 * 189.41686 * 12 11 10 45 45 H 1.08999 * 110.95687 * 79.04248 * 17 15 13 46 46 H 1.09004 * 110.95419 * 202.77051 * 17 15 13 47 47 H 1.09002 * 109.91952 * 263.13397 * 18 17 15 48 48 H 1.08994 * 110.08804 * 141.92075 * 18 17 15 49 49 H 0.96995 * 120.00073 * 180.02562 * 23 22 20 50 50 H 1.09000 * 110.06847 * 8.72524 * 28 10 8 51 51 H 1.09002 * 110.15837 * 247.19640 * 28 10 8 52 52 H 1.08001 * 125.90122 * 180.21665 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0033 5 6 4.7679 1.5455 -0.0072 6 6 4.8327 2.3356 1.3014 7 6 4.6945 2.5172 -1.1866 8 6 6.0008 0.6888 -0.1382 9 8 6.8048 0.6403 0.7686 10 7 6.2100 -0.0236 -1.2631 11 6 5.1771 -0.0586 -2.3028 12 6 4.9211 -1.5055 -2.7625 13 6 6.2658 -2.1165 -3.1013 14 1 6.7818 -1.4760 -3.8165 15 6 7.0971 -2.1919 -1.7908 16 1 6.5318 -2.6603 -0.9853 17 6 8.2671 -3.0719 -2.2602 18 6 7.5456 -4.1021 -3.1711 19 7 6.2723 -3.4811 -3.6051 20 6 5.2858 -4.0800 -4.3422 21 1 4.3949 -3.5275 -4.6019 22 6 5.4308 -5.3972 -4.7555 23 7 6.5167 -6.0704 -4.4394 24 14 4.0854 -6.2139 -5.7616 25 1 2.9775 -5.2499 -5.9817 26 1 4.6376 -6.6415 -7.0720 27 1 3.5712 -7.3997 -5.0304 28 6 7.4781 -0.7611 -1.4367 29 6 3.5348 -0.7320 0.0037 30 7 2.2893 -1.1327 0.0056 31 1 -0.3634 0.0046 1.0276 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3633 -0.8924 -0.5098 34 1 1.9281 2.1194 -0.0004 35 1 5.7623 2.9037 1.3372 36 1 3.9862 3.0203 1.3546 37 1 4.7957 1.6458 2.1445 38 1 4.5567 1.9566 -2.1112 39 1 3.8543 3.1971 -1.0454 40 1 5.6199 3.0902 -1.2436 41 1 4.2530 0.3612 -1.9057 42 1 5.5046 0.5368 -3.1551 43 1 4.4485 -2.0714 -1.9596 44 1 4.2796 -1.5064 -3.6438 45 1 8.9904 -2.4878 -2.8292 46 1 8.7461 -3.5668 -1.4153 47 1 7.3418 -5.0146 -2.6108 48 1 8.1626 -4.3301 -4.0402 49 1 6.6182 -6.9907 -4.7285 50 1 8.0501 -0.7450 -0.5090 51 1 8.0624 -0.3190 -2.2437 52 1 4.4055 -1.3709 0.0065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036858474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:55 Heat of formation + Delta-G solvation = 89.918886 kcal Electronic energy + Delta-G solvation = -33042.476719 eV Core-core repulsion = 29045.247776 eV Total energy + Delta-G solvation = -3997.228942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.84189 -40.13292 -38.36530 -35.71070 -35.16222 -33.05730 -32.57140 -31.48086 -29.67667 -29.42343 -28.27602 -27.23827 -26.78373 -25.09778 -24.10931 -22.48838 -22.27605 -21.31363 -20.35805 -20.01875 -19.44832 -18.62404 -17.51366 -16.45696 -16.09720 -15.66325 -15.49354 -15.21144 -15.00746 -14.54744 -14.32904 -14.04273 -13.88096 -13.76216 -13.56498 -13.18270 -12.96061 -12.91285 -12.71204 -12.57767 -12.40099 -12.31963 -12.22704 -11.89297 -11.72756 -11.55366 -11.47683 -11.37980 -11.08125 -10.80704 -10.69949 -10.62501 -10.48951 -10.09487 -10.02236 -9.83503 -9.58624 -9.49351 -9.46313 -9.35820 -8.58837 -8.43612 -8.38437 -6.78908 -5.67916 -3.00452 1.76731 2.37917 2.68401 2.79805 3.15949 3.41424 3.46661 3.49121 4.29317 4.42883 4.52524 4.67102 4.79530 4.91070 4.94951 4.99342 5.11023 5.14227 5.20346 5.25882 5.32507 5.41849 5.48024 5.51338 5.58605 5.63535 5.66128 5.69070 5.71833 5.82798 5.88782 5.93387 5.99409 6.02979 6.10068 6.19487 6.23256 6.26958 6.31126 6.43051 6.52891 6.57637 6.67274 6.71674 6.85496 6.91552 7.13250 7.58856 7.60631 7.61939 7.66155 7.85415 8.28496 8.33602 9.23504 9.87186 10.55392 11.44730 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.004037 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.546424 B = 6933.614171 C = 8712.416457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.064 3.936 4 C -0.229 4.229 5 C 0.000 4.000 6 C -0.120 4.120 7 C -0.152 4.152 8 C 0.525 3.475 9 O -0.545 6.545 10 N -0.602 5.602 11 C 0.097 3.903 12 C -0.129 4.129 13 C 0.169 3.831 14 H 0.018 0.982 15 C -0.123 4.123 16 H 0.078 0.922 17 C -0.135 4.135 18 C 0.177 3.823 19 N -0.595 5.595 20 C -0.222 4.222 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.908 3.092 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.124 3.876 29 C 0.065 3.935 30 N -0.284 5.284 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.173 0.827 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.038 0.962 49 H 0.251 0.749 50 H 0.089 0.911 51 H 0.067 0.933 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.910 19.366 8.644 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.083 4.083 4 C -0.241 4.241 5 C -0.004 4.004 6 C -0.178 4.178 7 C -0.210 4.210 8 C 0.313 3.687 9 O -0.422 6.422 10 N -0.334 5.334 11 C -0.026 4.026 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.036 0.964 15 C -0.143 4.143 16 H 0.097 0.903 17 C -0.174 4.174 18 C 0.053 3.947 19 N -0.319 5.319 20 C -0.350 4.350 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.002 3.998 29 C -0.122 4.122 30 N -0.104 5.104 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.190 0.810 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.086 0.914 52 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.511 18.094 8.981 21.920 hybrid contribution -0.255 0.060 -0.712 0.759 sum -8.766 18.154 8.269 21.789 Atomic orbital electron populations 1.21842 0.74231 1.04586 1.03229 1.48498 1.06647 1.03848 1.56931 1.22100 0.90421 0.93343 1.02397 1.19590 0.93348 0.93553 1.17638 1.19032 0.89675 0.93734 0.97999 1.21651 1.01665 0.99222 0.95261 1.22228 1.02501 0.98676 0.97560 1.20393 0.87053 0.79680 0.81590 1.90661 1.47475 1.65254 1.38832 1.48250 1.18081 1.48586 1.18499 1.22285 0.91559 0.98326 0.90394 1.21926 0.99419 0.93884 1.01580 1.20643 0.93066 0.88456 0.91819 0.96437 1.22621 0.98856 0.93683 0.99175 0.90348 1.22694 0.96527 0.98498 0.99674 1.21524 0.85504 0.92763 0.94942 1.44220 1.18655 1.07830 1.61213 1.19025 0.96747 0.94535 1.24690 0.90456 1.24769 0.97700 0.96801 1.01167 1.69948 1.26523 1.10119 1.50309 0.86102 0.81027 0.79411 0.79596 1.20609 1.21843 1.21838 1.21626 0.84866 0.91166 1.02118 1.23947 0.95426 0.94260 0.98570 1.77529 1.01474 1.07606 1.23809 0.90883 0.89575 0.89110 0.81006 0.91868 0.92403 0.91948 0.90598 0.91724 0.91945 0.88252 0.92124 0.91167 0.90993 0.92363 0.92097 0.92798 0.94405 0.93883 0.89257 0.91442 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.47 59.85 0.69 1.35 16 2 N -0.38 -4.09 4.01 -68.16 -0.27 -4.36 16 3 C 0.06 0.60 10.95 -17.22 -0.19 0.41 16 4 C -0.23 -2.65 3.00 -105.05 -0.32 -2.97 16 5 C 0.00 0.00 0.67 -156.81 -0.10 -0.10 16 6 C -0.12 -1.23 7.70 37.16 0.29 -0.95 16 7 C -0.15 -1.34 7.87 37.15 0.29 -1.05 16 8 C 0.53 7.62 5.51 -10.98 -0.06 7.55 16 9 O -0.54 -9.55 15.33 5.55 0.09 -9.47 16 10 N -0.60 -8.65 2.58 -172.49 -0.45 -9.09 16 11 C 0.10 1.33 3.46 -3.49 -0.01 1.32 16 12 C -0.13 -2.25 5.27 -26.97 -0.14 -2.39 16 13 C 0.17 3.37 2.55 -67.97 -0.17 3.20 16 14 H 0.02 0.37 7.94 -51.93 -0.41 -0.04 16 15 C -0.12 -2.21 2.86 -89.36 -0.26 -2.46 16 16 H 0.08 1.53 8.12 -51.93 -0.42 1.11 16 17 C -0.14 -2.53 6.54 -25.13 -0.16 -2.70 16 18 C 0.18 4.30 5.45 -1.91 -0.01 4.29 16 19 N -0.59 -14.92 3.35 -163.08 -0.55 -15.47 16 20 C -0.22 -6.09 9.88 -15.06 -0.15 -6.24 16 21 H 0.08 2.06 7.22 -52.49 -0.38 1.68 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -27.18 10.43 55.49 0.58 -26.60 16 24 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C 0.12 1.91 5.97 -3.76 -0.02 1.89 16 29 C 0.06 0.93 8.20 -17.36 -0.14 0.79 16 30 N -0.28 -4.20 12.58 30.63 0.39 -3.82 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.70 4.67 -51.93 -0.24 0.46 16 39 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 1.24 2.94 -51.93 -0.15 1.09 16 42 H 0.06 0.77 7.80 -51.93 -0.41 0.36 16 43 H 0.07 1.32 6.32 -51.93 -0.33 1.00 16 44 H 0.07 1.30 7.63 -51.93 -0.40 0.91 16 45 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 1.46 7.21 -51.93 -0.37 1.09 16 48 H 0.04 1.00 7.76 -51.93 -0.40 0.60 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.09 1.41 6.98 -51.93 -0.36 1.05 16 51 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 52 H 0.18 2.89 6.40 -52.49 -0.34 2.55 16 LS Contribution 388.64 15.07 5.86 5.86 Total: -1.00 -33.82 388.64 -8.36 -42.18 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -8.41 Total: 1.93 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.57 Total: 1.60 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.30 Total: -59.34 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.82 -8.36 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036858474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.099 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds