Wall clock time and date at job start Wed Apr 1 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03462 * 2 1 4 4 C 1.35315 * 107.74610 * 180.14594 * 3 2 1 5 5 C 1.50700 * 126.03978 * 179.87234 * 4 3 2 6 6 C 1.53005 * 109.46985 * 65.17675 * 5 4 3 7 7 C 1.52994 * 109.47476 * 305.17406 * 5 4 3 8 8 C 1.50700 * 109.47017 * 185.17397 * 5 4 3 9 9 O 1.21286 * 120.00191 * 244.87841 * 8 5 4 10 10 N 1.34781 * 120.00147 * 64.88307 * 8 5 4 11 11 C 1.46596 * 119.67901 * 354.36683 * 10 8 5 12 12 C 1.53963 * 110.57319 * 227.82868 * 11 10 8 13 13 C 1.51540 * 107.34153 * 308.95073 * 12 11 10 14 14 H 1.09000 * 109.25949 * 306.28802 * 13 12 11 15 15 C 1.55368 * 107.80605 * 64.83959 * 13 12 11 16 16 H 1.08994 * 111.51273 * 50.42385 * 15 13 12 17 17 C 1.53743 * 100.21998 * 169.10403 * 15 13 12 18 18 C 1.55294 * 101.84364 * 320.90792 * 17 15 13 19 19 N 1.45466 * 117.36345 * 181.90755 * 13 12 11 20 20 C 1.36936 * 126.40313 * 30.57820 * 19 13 12 21 21 H 1.08002 * 120.00126 * 0.02562 * 20 19 13 22 22 C 1.38814 * 120.00133 * 180.02562 * 20 19 13 23 23 N 1.31620 * 119.99946 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00132 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46948 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47142 * 119.99536 * 24 22 20 27 27 H 1.48499 * 109.46801 * 239.99926 * 24 22 20 28 28 C 1.47714 * 119.68513 * 174.34653 * 10 8 5 29 29 C 1.39872 * 107.92150 * 359.61030 * 4 3 2 30 30 N 1.30838 * 108.20091 * 0.24488 * 29 4 3 31 31 H 1.09001 * 109.47247 * 270.25575 * 1 2 3 32 32 H 1.08995 * 109.47231 * 30.26217 * 1 2 3 33 33 H 1.09006 * 109.46559 * 150.26485 * 1 2 3 34 34 H 1.07998 * 126.12836 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.46814 * 175.00708 * 6 5 4 36 36 H 1.09002 * 109.46952 * 295.00794 * 6 5 4 37 37 H 1.08999 * 109.46950 * 55.01039 * 6 5 4 38 38 H 1.08999 * 109.46992 * 305.13213 * 7 5 4 39 39 H 1.09007 * 109.46589 * 65.12735 * 7 5 4 40 40 H 1.08994 * 109.47420 * 185.12666 * 7 5 4 41 41 H 1.08996 * 109.25730 * 348.10906 * 11 10 8 42 42 H 1.08999 * 109.25877 * 107.54406 * 11 10 8 43 43 H 1.08997 * 109.88152 * 68.40671 * 12 11 10 44 44 H 1.09000 * 109.88030 * 189.41686 * 12 11 10 45 45 H 1.08999 * 110.95687 * 79.04248 * 17 15 13 46 46 H 1.09004 * 110.95419 * 202.77051 * 17 15 13 47 47 H 1.09002 * 109.91952 * 263.13397 * 18 17 15 48 48 H 1.08994 * 110.08804 * 141.92075 * 18 17 15 49 49 H 0.96995 * 120.00073 * 180.02562 * 23 22 20 50 50 H 1.09000 * 110.06847 * 8.72524 * 28 10 8 51 51 H 1.09002 * 110.15837 * 247.19640 * 28 10 8 52 52 H 1.08001 * 125.90122 * 180.21665 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0033 5 6 4.7679 1.5455 -0.0072 6 6 4.8327 2.3356 1.3014 7 6 4.6945 2.5172 -1.1866 8 6 6.0008 0.6888 -0.1382 9 8 6.8048 0.6403 0.7686 10 7 6.2100 -0.0236 -1.2631 11 6 5.1771 -0.0586 -2.3028 12 6 4.9211 -1.5055 -2.7625 13 6 6.2658 -2.1165 -3.1013 14 1 6.7818 -1.4760 -3.8165 15 6 7.0971 -2.1919 -1.7908 16 1 6.5318 -2.6603 -0.9853 17 6 8.2671 -3.0719 -2.2602 18 6 7.5456 -4.1021 -3.1711 19 7 6.2723 -3.4811 -3.6051 20 6 5.2858 -4.0800 -4.3422 21 1 4.3949 -3.5275 -4.6019 22 6 5.4308 -5.3972 -4.7555 23 7 6.5167 -6.0704 -4.4394 24 14 4.0854 -6.2139 -5.7616 25 1 2.9775 -5.2499 -5.9817 26 1 4.6376 -6.6415 -7.0720 27 1 3.5712 -7.3997 -5.0304 28 6 7.4781 -0.7611 -1.4367 29 6 3.5348 -0.7320 0.0037 30 7 2.2893 -1.1327 0.0056 31 1 -0.3634 0.0046 1.0276 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3633 -0.8924 -0.5098 34 1 1.9281 2.1194 -0.0004 35 1 5.7623 2.9037 1.3372 36 1 3.9862 3.0203 1.3546 37 1 4.7957 1.6458 2.1445 38 1 4.5567 1.9566 -2.1112 39 1 3.8543 3.1971 -1.0454 40 1 5.6199 3.0902 -1.2436 41 1 4.2530 0.3612 -1.9057 42 1 5.5046 0.5368 -3.1551 43 1 4.4485 -2.0714 -1.9596 44 1 4.2796 -1.5064 -3.6438 45 1 8.9904 -2.4878 -2.8292 46 1 8.7461 -3.5668 -1.4153 47 1 7.3418 -5.0146 -2.6108 48 1 8.1626 -4.3301 -4.0402 49 1 6.6182 -6.9907 -4.7285 50 1 8.0501 -0.7450 -0.5090 51 1 8.0624 -0.3190 -2.2437 52 1 4.4055 -1.3709 0.0065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036858474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:53 Heat of formation + Delta-G solvation = 68.236532 kcal Electronic energy + Delta-G solvation = -33043.416936 eV Core-core repulsion = 29045.247776 eV Total energy + Delta-G solvation = -3998.169160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.77676 -41.29581 -39.84022 -36.92564 -36.38741 -34.43690 -33.83619 -33.00561 -31.32720 -30.33542 -29.79056 -27.98063 -27.58217 -26.77147 -25.61549 -23.75577 -23.51740 -22.32414 -21.85407 -21.30915 -20.87810 -19.71487 -18.72590 -18.08191 -17.27516 -16.96816 -16.65180 -16.32280 -16.25128 -16.01709 -15.68120 -15.37112 -15.13764 -14.92038 -14.78403 -14.44955 -14.10202 -13.92193 -13.84894 -13.66752 -13.42174 -13.32662 -13.19148 -13.12521 -13.03022 -12.96465 -12.76778 -12.71730 -12.53548 -12.38807 -12.07193 -12.01496 -11.88846 -11.74364 -11.58817 -11.50329 -11.35835 -10.99008 -10.72429 -10.57434 -10.35689 -9.63220 -9.26144 -8.86731 -7.83815 -5.17703 0.97211 1.43134 1.44520 1.54052 1.57081 1.73790 1.78994 2.02930 2.49408 3.34676 3.36060 3.49807 3.64294 3.84177 3.87857 4.00323 4.03243 4.10922 4.19832 4.21988 4.23534 4.30053 4.33144 4.42376 4.49925 4.52127 4.65755 4.71648 4.75188 4.79429 4.82800 4.85703 4.87511 4.89514 4.90773 5.01416 5.05424 5.07816 5.09582 5.17529 5.22899 5.35399 5.43045 5.48860 5.53137 5.57616 5.59569 5.66929 5.76725 6.18860 6.20784 6.45525 6.72287 7.09509 7.19887 7.79713 8.48481 9.28236 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.004037 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.546424 B = 6933.614171 C = 8712.416457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.374 5.374 3 C 0.089 3.911 4 C -0.243 4.243 5 C 0.008 3.992 6 C -0.117 4.117 7 C -0.150 4.150 8 C 0.521 3.479 9 O -0.581 6.581 10 N -0.602 5.602 11 C 0.111 3.889 12 C -0.119 4.119 13 C 0.161 3.839 14 H 0.024 0.976 15 C -0.108 4.108 16 H 0.055 0.945 17 C -0.120 4.120 18 C 0.183 3.817 19 N -0.616 5.616 20 C -0.226 4.226 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.972 3.028 25 H -0.265 1.265 26 H -0.292 1.292 27 H -0.297 1.297 28 C 0.132 3.868 29 C 0.046 3.954 30 N -0.334 5.334 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.224 0.776 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.014 0.986 48 H 0.006 0.994 49 H 0.244 0.756 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.151 23.678 8.551 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.156 5.156 3 C -0.058 4.058 4 C -0.255 4.255 5 C 0.003 3.997 6 C -0.175 4.175 7 C -0.207 4.207 8 C 0.310 3.690 9 O -0.461 6.461 10 N -0.334 5.334 11 C -0.012 4.012 12 C -0.159 4.159 13 C 0.054 3.946 14 H 0.041 0.959 15 C -0.128 4.128 16 H 0.074 0.926 17 C -0.159 4.159 18 C 0.058 3.942 19 N -0.340 5.340 20 C -0.355 4.355 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.801 3.199 25 H -0.189 1.189 26 H -0.219 1.219 27 H -0.224 1.224 28 C 0.010 3.990 29 C -0.140 4.140 30 N -0.156 5.156 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.099 0.901 34 H 0.241 0.759 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.032 0.968 48 H 0.024 0.976 49 H 0.054 0.946 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.775 22.440 8.889 26.432 hybrid contribution 0.374 -1.286 -0.619 1.475 sum -10.401 21.155 8.270 24.982 Atomic orbital electron populations 1.22232 0.71805 1.06048 1.04660 1.48842 1.07986 1.03241 1.55512 1.22785 0.89057 0.94842 0.99141 1.19626 0.94657 0.92082 1.19158 1.19054 0.87400 0.93467 0.99758 1.21657 1.02992 0.99048 0.93760 1.22247 1.04167 0.98415 0.95837 1.21144 0.87798 0.79457 0.80573 1.90641 1.49081 1.66521 1.39811 1.48268 1.17742 1.48413 1.18959 1.22270 0.92375 0.95616 0.90891 1.21805 0.97449 0.96121 1.00490 1.20863 0.95155 0.86165 0.92434 0.95865 1.22439 0.97678 0.95348 0.97358 0.92644 1.22570 0.96727 0.97390 0.99216 1.21291 0.85613 0.93196 0.94116 1.44510 1.18413 1.09858 1.61230 1.19389 0.97276 0.94793 1.24061 0.89942 1.25592 0.99959 0.97648 1.02988 1.70172 1.28409 1.09924 1.51806 0.85092 0.78846 0.78236 0.77733 1.18890 1.21880 1.22405 1.21489 0.85694 0.89294 1.02552 1.23636 0.94700 0.95568 1.00048 1.77436 1.02177 1.10255 1.25717 0.89485 0.85655 0.90122 0.75926 0.92453 0.88736 0.94358 0.90960 0.88219 0.91806 0.86420 0.89996 0.93351 0.91741 0.90016 0.90610 0.96814 0.97586 0.94643 0.89548 0.89546 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.47 127.77 1.47 2.35 16 2 N -0.37 -7.06 4.01 -369.56 -1.48 -8.55 16 3 C 0.09 1.28 10.95 83.54 0.91 2.19 16 4 C -0.24 -5.05 3.00 -20.14 -0.06 -5.11 16 5 C 0.01 0.15 0.67 -53.67 -0.04 0.11 16 6 C -0.12 -2.06 7.70 71.98 0.55 -1.51 16 7 C -0.15 -1.93 7.87 71.98 0.57 -1.37 16 8 C 0.52 14.58 5.51 87.66 0.48 15.06 16 9 O -0.58 -20.33 15.33 -3.05 -0.05 -20.37 16 10 N -0.60 -16.72 2.58 -818.01 -2.11 -18.83 16 11 C 0.11 2.85 3.46 86.69 0.30 3.15 16 12 C -0.12 -4.19 5.27 30.44 0.16 -4.03 16 13 C 0.16 6.52 2.55 45.52 0.12 6.64 16 14 H 0.02 0.96 7.94 -2.39 -0.02 0.94 16 15 C -0.11 -3.94 2.86 -9.98 -0.03 -3.97 16 16 H 0.06 2.28 8.12 -2.39 -0.02 2.26 16 17 C -0.12 -4.59 6.54 31.63 0.21 -4.38 16 18 C 0.18 9.36 5.45 86.85 0.47 9.83 16 19 N -0.62 -32.08 3.35 -669.86 -2.24 -34.32 16 20 C -0.23 -12.81 9.88 84.03 0.83 -11.98 16 21 H 0.08 4.47 7.22 -2.91 -0.02 4.45 16 22 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 23 N -0.95 -59.09 10.43 21.65 0.23 -58.86 16 24 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 25 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 28 C 0.13 3.96 5.97 85.90 0.51 4.47 16 29 C 0.05 1.33 8.20 85.24 0.70 2.03 16 30 N -0.33 -9.86 12.58 -57.02 -0.72 -10.58 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.22 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.06 1.08 8.03 -2.38 -0.02 1.06 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.00 4.67 -2.39 -0.01 0.99 16 39 H 0.10 0.63 8.07 -2.38 -0.02 0.61 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.12 2.68 2.94 -2.39 -0.01 2.67 16 42 H 0.08 1.82 7.80 -2.39 -0.02 1.80 16 43 H 0.05 1.91 6.32 -2.39 -0.02 1.89 16 44 H 0.06 2.33 7.63 -2.39 -0.02 2.32 16 45 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 46 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 47 H 0.01 0.79 7.21 -2.39 -0.02 0.77 16 48 H 0.01 0.33 7.76 -2.39 -0.02 0.32 16 49 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 50 H 0.09 2.70 6.98 -2.39 -0.02 2.68 16 51 H 0.09 2.30 8.08 -2.39 -0.02 2.28 16 52 H 0.15 5.12 6.40 -2.91 -0.02 5.10 16 Total: -1.00 -80.46 388.64 4.19 -76.27 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.91 Total: 16.30 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.62 Total: 9.91 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -6.33 Total: -131.14 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -80.46 4.19 -76.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036858474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.508 kcal (2) G-P(sol) polarization free energy of solvation -80.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds