Wall clock time and date at job start Wed Apr 1 2020 04:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47045 * 2 1 4 4 C 1.50700 * 109.46914 * 119.99644 * 2 1 3 5 5 C 1.39676 * 126.06646 * 274.99914 * 4 2 1 6 6 C 1.38411 * 105.35867 * 180.02562 * 5 4 2 7 7 C 1.47157 * 126.88616 * 180.02562 * 6 5 4 8 8 O 1.21622 * 120.00443 * 151.62121 * 7 6 5 9 9 N 1.34779 * 119.99924 * 331.61919 * 7 6 5 10 10 C 1.46826 * 120.30392 * 350.48776 * 9 7 6 11 11 C 1.52966 * 107.39475 * 235.04005 * 10 9 7 12 12 C 1.53546 * 109.95502 * 298.41147 * 11 10 9 13 13 H 1.09001 * 110.97881 * 289.23467 * 12 11 10 14 14 C 1.51777 * 112.12483 * 53.06996 * 12 11 10 15 15 H 1.08997 * 104.98446 * 206.70066 * 14 12 11 16 16 C 1.53383 * 105.83334 * 95.18087 * 14 12 11 17 17 C 1.54477 * 102.53982 * 29.49255 * 16 14 12 18 18 N 1.46865 * 106.65248 * 332.25736 * 17 16 14 19 19 C 1.36940 * 125.33352 * 195.40410 * 18 17 16 20 20 H 1.07999 * 119.99860 * 169.84831 * 19 18 17 21 21 C 1.38811 * 119.99991 * 349.85240 * 19 18 17 22 22 N 1.31622 * 120.00040 * 3.93566 * 21 19 18 23 23 Si 1.86804 * 120.00025 * 183.93170 * 21 19 18 24 24 H 1.48497 * 109.47030 * 94.99413 * 23 21 19 25 25 H 1.48504 * 109.47102 * 214.99323 * 23 21 19 26 26 H 1.48500 * 109.47015 * 334.99178 * 23 21 19 27 27 C 1.45645 * 120.30543 * 170.51550 * 9 7 6 28 28 N 1.36607 * 106.22915 * 0.26745 * 6 5 4 29 29 C 1.46496 * 125.18928 * 179.73394 * 28 6 5 30 30 N 1.28442 * 109.61820 * 359.54940 * 28 6 5 31 31 H 1.09000 * 109.47336 * 300.00386 * 1 2 3 32 32 H 1.09003 * 109.46763 * 60.00226 * 1 2 3 33 33 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47336 * 239.99614 * 2 1 3 35 35 H 1.08998 * 109.46580 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46451 * 299.99764 * 3 2 1 37 37 H 1.08998 * 109.47146 * 59.99139 * 3 2 1 38 38 H 1.08005 * 127.32320 * 0.06439 * 5 4 2 39 39 H 1.09005 * 109.87329 * 354.51371 * 10 9 7 40 40 H 1.08995 * 109.87336 * 115.49657 * 10 9 7 41 41 H 1.09002 * 109.37889 * 58.68167 * 11 10 9 42 42 H 1.09002 * 109.38408 * 178.46524 * 11 10 9 43 43 H 1.09002 * 110.79361 * 271.23212 * 16 14 12 44 44 H 1.08999 * 110.79430 * 147.75413 * 16 14 12 45 45 H 1.09000 * 110.01714 * 212.96270 * 17 16 14 46 46 H 1.08994 * 110.02232 * 91.56239 * 17 16 14 47 47 H 0.97003 * 120.00033 * 180.02562 * 22 21 19 48 48 H 1.09004 * 108.44188 * 22.15710 * 27 9 7 49 49 H 1.09000 * 108.44134 * 264.84983 * 27 9 7 50 50 H 1.09003 * 109.46751 * 93.67356 * 29 28 6 51 51 H 1.08997 * 109.47362 * 213.67785 * 29 28 6 52 52 H 1.09001 * 109.46816 * 333.67889 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2136 -0.1402 2.4927 6 6 2.6859 -1.1655 3.2936 7 6 3.0349 -1.0822 4.7208 8 8 2.9394 -2.0666 5.4287 9 7 3.4605 0.0849 5.2435 10 6 3.7777 1.2180 4.3653 11 6 5.2092 1.6549 4.6815 12 6 5.3059 2.1146 6.1433 13 1 4.7897 3.0635 6.2890 14 6 4.7713 1.0712 7.1073 15 1 4.4394 1.6360 7.9783 16 6 5.9920 0.2683 7.5741 17 6 7.1308 1.3085 7.4875 18 7 6.7478 2.2657 6.4416 19 6 7.5911 3.1618 5.8407 20 1 7.2638 3.7118 4.9708 21 6 8.8668 3.3631 6.3497 22 7 9.2937 2.6377 7.3616 23 14 9.9777 4.6634 5.5984 24 1 9.8546 5.9258 6.3706 25 1 11.3861 4.1942 5.6381 26 1 9.5756 4.9039 4.1892 27 6 3.6104 0.2336 6.6845 28 7 2.7683 -2.2689 2.4924 29 6 3.2289 -3.5916 2.9219 30 7 2.3766 -1.9706 1.3061 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 2.0248 0.8830 2.7823 39 1 3.7062 0.9098 3.3222 40 1 3.0876 2.0397 4.5567 41 1 5.8874 0.8174 4.5179 42 1 5.4887 2.4800 4.0264 43 1 6.1825 -0.5706 6.9047 44 1 5.8596 -0.0759 8.5998 45 1 8.0657 0.8167 7.2191 46 1 7.2399 1.8228 8.4423 47 1 10.1850 2.7786 7.7175 48 1 3.7225 -0.7578 7.1236 49 1 2.6994 0.6814 7.0816 50 1 2.3716 -4.1963 3.2179 51 1 3.7510 -4.0794 2.0988 52 1 3.9066 -3.4830 3.7686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036858616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:42 Heat of formation + Delta-G solvation = 73.627263 kcal Electronic energy + Delta-G solvation = -31980.418870 eV Core-core repulsion = 27982.483470 eV Total energy + Delta-G solvation = -3997.935400 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.73900 -40.10804 -38.20695 -36.18735 -35.47272 -33.07827 -32.46311 -31.69851 -31.16281 -29.48003 -28.15580 -27.37977 -26.91277 -25.42804 -24.10767 -23.19613 -22.58559 -22.07196 -20.59323 -20.20577 -18.99938 -18.17351 -17.34896 -16.90860 -16.63964 -16.31021 -15.74102 -15.19094 -14.85860 -14.71042 -14.57410 -14.33971 -14.08133 -13.80776 -13.65606 -13.45662 -13.06872 -12.99780 -12.82572 -12.62826 -12.51569 -12.29163 -12.24574 -11.78353 -11.63611 -11.56818 -11.37424 -11.31915 -11.30967 -11.04603 -10.86010 -10.77193 -10.58487 -10.22157 -10.10871 -9.96137 -9.85563 -9.67425 -9.51834 -9.14542 -8.92372 -8.62893 -8.48577 -6.82361 -5.74687 -3.09597 1.24611 2.21171 2.43855 3.00002 3.12237 3.37591 3.42831 3.44950 4.17973 4.31793 4.45848 4.66348 4.81724 4.96215 4.98780 5.01628 5.10572 5.16738 5.21160 5.23931 5.32162 5.33344 5.36975 5.40987 5.45655 5.47600 5.51990 5.62991 5.66000 5.75409 5.84091 5.85008 5.87295 5.96860 6.02372 6.06156 6.12283 6.21903 6.26981 6.32918 6.38279 6.54712 6.61329 6.62179 6.70740 6.86220 7.04839 7.36018 7.56471 7.60707 7.81110 7.93969 8.07370 8.25905 9.19574 9.79691 10.46229 11.36339 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.003115 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.896922 B = 8987.018172 C =10267.952129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.009 4.009 3 C -0.145 4.145 4 C 0.032 3.968 5 C -0.186 4.186 6 C -0.025 4.025 7 C 0.588 3.412 8 O -0.545 6.545 9 N -0.582 5.582 10 C 0.089 3.911 11 C -0.138 4.138 12 C 0.173 3.827 13 H 0.043 0.957 14 C -0.108 4.108 15 H 0.067 0.933 16 C -0.136 4.136 17 C 0.175 3.825 18 N -0.599 5.599 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.136 3.864 28 N -0.261 5.261 29 C 0.092 3.908 30 N -0.280 5.280 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.164 0.836 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.027 0.973 47 H 0.252 0.748 48 H 0.087 0.913 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 -6.601 -10.476 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 C -0.203 4.203 4 C -0.125 4.125 5 C -0.215 4.215 6 C -0.154 4.154 7 C 0.375 3.625 8 O -0.424 6.424 9 N -0.314 5.314 10 C -0.034 4.034 11 C -0.179 4.179 12 C 0.065 3.935 13 H 0.061 0.939 14 C -0.127 4.127 15 H 0.085 0.915 16 C -0.175 4.175 17 C 0.050 3.950 18 N -0.324 5.324 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.014 3.986 28 N -0.047 5.047 29 C -0.049 4.049 30 N -0.112 5.112 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.181 0.819 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.045 0.955 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.077 0.923 50 H 0.104 0.896 51 H 0.111 0.889 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.464 -8.176 -10.571 21.205 hybrid contribution 0.692 1.422 0.290 1.608 sum -15.771 -6.754 -10.281 20.001 Atomic orbital electron populations 1.21814 0.94061 1.02025 1.02040 1.19414 0.95516 0.95067 0.92892 1.21845 1.01653 0.94535 1.02276 1.21935 1.04162 0.90039 0.96321 1.22180 1.07290 0.99512 0.92510 1.21398 1.11050 0.88977 0.93997 1.16936 0.77637 0.83198 0.84759 1.90782 1.54806 1.35304 1.61468 1.47433 1.63780 1.12226 1.07927 1.22378 0.98176 0.87948 0.94902 1.22504 0.93640 1.01739 0.99982 1.20549 0.87354 0.94360 0.91212 0.93932 1.20728 0.95186 0.97059 0.99753 0.91476 1.22690 0.96313 0.99005 0.99492 1.21188 0.93902 0.88057 0.91812 1.44686 1.02140 1.40978 1.44583 1.18990 0.93895 1.14808 1.07831 0.90554 1.24863 0.97972 0.99521 0.97916 1.69972 1.18278 1.41179 1.27136 0.86143 0.80092 0.81429 0.78370 1.21621 1.21803 1.20599 1.20421 0.97513 1.01794 0.78900 1.45497 1.44594 1.09596 1.05045 1.22212 1.01609 0.79012 1.02027 1.73088 1.17277 1.17835 1.03015 0.92346 0.92054 0.92661 0.89897 0.92116 0.91944 0.92078 0.81856 0.88604 0.91074 0.91511 0.91031 0.92645 0.92021 0.91740 0.95490 0.93755 0.89441 0.92285 0.89611 0.88897 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.18 37.16 0.34 -0.74 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.15 -1.10 8.79 37.16 0.33 -0.77 16 4 C 0.03 0.38 6.13 -82.47 -0.51 -0.13 16 5 C -0.19 -2.21 7.72 -38.98 -0.30 -2.51 16 6 C -0.03 -0.35 6.35 -82.06 -0.52 -0.87 16 7 C 0.59 8.91 7.36 -12.64 -0.09 8.82 16 8 O -0.55 -9.35 14.96 5.26 0.08 -9.28 16 9 N -0.58 -8.37 3.00 -177.70 -0.53 -8.90 16 10 C 0.09 1.16 5.19 -3.88 -0.02 1.14 16 11 C -0.14 -2.34 5.19 -26.47 -0.14 -2.48 16 12 C 0.17 3.29 3.43 -67.44 -0.23 3.06 16 13 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.11 -1.80 2.45 -92.88 -0.23 -2.03 16 15 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 16 C -0.14 -2.55 6.37 -25.76 -0.16 -2.71 16 17 C 0.18 4.18 5.39 -3.07 -0.02 4.16 16 18 N -0.60 -14.54 3.04 -163.71 -0.50 -15.04 16 19 C -0.23 -6.05 9.81 -15.06 -0.15 -6.20 16 20 H 0.08 1.96 7.67 -52.49 -0.40 1.56 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.56 10.35 55.49 0.57 -25.98 16 23 Si 0.91 21.67 29.56 -169.99 -5.02 16.65 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.14 1.98 6.01 -6.34 -0.04 1.94 16 28 N -0.26 -3.46 3.75 -63.88 -0.24 -3.70 16 29 C 0.09 0.95 10.79 59.84 0.65 1.59 16 30 N -0.28 -3.72 11.90 33.64 0.40 -3.32 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.44 7.37 -51.93 -0.38 0.05 16 38 H 0.16 1.60 6.07 -52.48 -0.32 1.28 16 39 H 0.10 1.17 4.38 -51.93 -0.23 0.94 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.23 7.96 -51.93 -0.41 0.81 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.74 6.98 -51.93 -0.36 1.37 16 46 H 0.03 0.70 7.87 -51.93 -0.41 0.30 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.09 1.34 6.72 -51.93 -0.35 0.99 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.10 1.13 6.92 -51.93 -0.36 0.77 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -31.94 399.19 -9.42 -41.36 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.70 Total: 0.56 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.50 Total: 1.63 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.30 Total: -56.93 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.94 -9.42 -41.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036858616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.984 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds