Wall clock time and date at job start Wed Apr 1 2020 04:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 C 1.50694 * 109.47019 * 120.00365 * 2 1 3 5 5 C 1.39679 * 126.06948 * 274.99532 * 4 2 1 6 6 C 1.38405 * 105.36009 * 179.97438 * 5 4 2 7 7 C 1.47155 * 126.88150 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00149 * 155.21820 * 7 6 5 9 9 N 1.34776 * 120.00359 * 335.21754 * 7 6 5 10 10 C 1.46594 * 119.68504 * 0.30342 * 9 7 6 11 11 C 1.53537 * 110.82044 * 227.73153 * 10 9 7 12 12 C 1.51518 * 107.42388 * 309.21934 * 11 10 9 13 13 H 1.09000 * 108.81673 * 306.40566 * 12 11 10 14 14 C 1.55367 * 107.78358 * 64.70839 * 12 11 10 15 15 H 1.09000 * 112.27494 * 50.83976 * 14 12 11 16 16 C 1.53737 * 100.22455 * 169.05821 * 14 12 11 17 17 C 1.55283 * 101.84469 * 320.91129 * 16 14 12 18 18 N 1.45469 * 117.34059 * 181.74250 * 12 11 10 19 19 C 1.36937 * 126.40390 * 30.65005 * 18 12 11 20 20 H 1.07995 * 119.99995 * 359.97438 * 19 18 12 21 21 C 1.38816 * 119.99836 * 179.97438 * 19 18 12 22 22 N 1.31620 * 120.00104 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99698 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47504 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47278 * 120.00110 * 23 21 19 26 26 H 1.48500 * 109.47070 * 239.99910 * 23 21 19 27 27 C 1.47722 * 119.68993 * 180.57678 * 9 7 6 28 28 N 1.36599 * 106.23274 * 0.02562 * 6 5 4 29 29 C 1.46494 * 125.19006 * 179.97438 * 28 6 5 30 30 N 1.28440 * 109.61839 * 359.76620 * 28 6 5 31 31 H 1.09004 * 109.47568 * 59.99898 * 1 2 3 32 32 H 1.08996 * 109.47258 * 299.99737 * 1 2 3 33 33 H 1.09011 * 109.47061 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46913 * 240.00166 * 2 1 3 35 35 H 1.09003 * 109.46520 * 59.99822 * 3 2 1 36 36 H 1.08997 * 109.47170 * 180.02562 * 3 2 1 37 37 H 1.08991 * 109.47303 * 300.00372 * 3 2 1 38 38 H 1.07999 * 127.31636 * 359.95209 * 5 4 2 39 39 H 1.09008 * 109.25393 * 348.10465 * 10 9 7 40 40 H 1.09004 * 109.25757 * 107.52984 * 10 9 7 41 41 H 1.08994 * 109.96573 * 189.66230 * 11 10 9 42 42 H 1.09004 * 109.77803 * 68.66669 * 11 10 9 43 43 H 1.09005 * 110.95586 * 79.05179 * 16 14 12 44 44 H 1.09006 * 110.95596 * 202.77005 * 16 14 12 45 45 H 1.08995 * 109.92220 * 141.83005 * 17 16 14 46 46 H 1.09006 * 109.91748 * 262.93034 * 17 16 14 47 47 H 0.96995 * 119.99889 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.06813 * 247.15905 * 27 9 7 49 49 H 1.09008 * 110.06576 * 8.72878 * 27 9 7 50 50 H 1.09005 * 109.47171 * 84.56913 * 29 28 6 51 51 H 1.09002 * 109.47384 * 204.56867 * 29 28 6 52 52 H 1.09007 * 109.47395 * 324.56902 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2137 -0.1405 2.4926 6 6 2.6848 -1.1662 3.2937 7 6 3.0335 -1.0831 4.7209 8 8 2.9998 -2.0819 5.4143 9 7 3.3901 0.0996 5.2599 10 6 3.4220 1.3002 4.4194 11 6 4.7313 2.0755 4.6246 12 6 4.9153 2.2684 6.1162 13 1 4.0162 2.7301 6.5245 14 6 5.1050 0.8655 6.7563 15 1 5.8724 0.2804 6.2494 16 6 5.5535 1.2691 8.1703 17 6 6.4762 2.4834 7.8776 18 7 6.0818 3.0193 6.5538 19 6 6.6998 4.0321 5.8701 20 1 6.3232 4.3414 4.9064 21 6 7.8105 4.6611 6.4159 22 7 8.2692 4.2844 7.5906 23 14 8.6530 6.0432 5.4835 24 1 7.9472 6.2753 4.1978 25 1 8.6169 7.2840 6.2985 26 1 10.0646 5.6693 5.2134 27 6 3.7511 0.1726 6.6904 28 7 2.7613 -2.2709 2.4939 29 6 3.2141 -3.5957 2.9253 30 7 2.3717 -1.9720 1.3071 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0278 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6765 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8899 38 1 2.0265 0.8830 2.7819 39 1 3.3383 1.0085 3.3724 40 1 2.5822 1.9443 4.6805 41 1 4.6713 3.0449 4.1300 42 1 5.5660 1.5036 4.2191 43 1 4.7001 1.5660 8.7801 44 1 6.1101 0.4627 8.6478 45 1 6.3392 3.2470 8.6432 46 1 7.5175 2.1618 7.8562 47 1 9.0454 4.7237 7.9717 48 1 3.0066 0.7536 7.2348 49 1 3.8236 -0.8310 7.1096 50 1 2.3800 -4.1372 3.3716 51 1 3.5881 -4.1500 2.0645 52 1 4.0111 -3.4857 3.6608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036858618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:50 Heat of formation + Delta-G solvation = 83.631849 kcal Electronic energy + Delta-G solvation = -31908.091590 eV Core-core repulsion = 27910.590021 eV Total energy + Delta-G solvation = -3997.501569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.79292 -40.11132 -38.23145 -36.22670 -35.51091 -33.00749 -32.46082 -31.67930 -31.28295 -29.47026 -28.03031 -27.38792 -26.94537 -25.26604 -24.15022 -23.13762 -22.31545 -21.92239 -20.65857 -20.01582 -19.54085 -18.74198 -17.31212 -16.71311 -16.43694 -16.21696 -15.80657 -15.14715 -15.08827 -14.70183 -14.38989 -14.34970 -14.19061 -13.76719 -13.72314 -13.51980 -13.17968 -12.89273 -12.85356 -12.65823 -12.56403 -12.39134 -12.22361 -11.71612 -11.62795 -11.52849 -11.42605 -11.35840 -11.30829 -10.88460 -10.84148 -10.75364 -10.52812 -10.23536 -10.10291 -9.98202 -9.86432 -9.65987 -9.52507 -9.16704 -8.93511 -8.65306 -8.60142 -6.86507 -5.74265 -3.07493 1.20463 2.18666 2.40738 2.97758 3.10276 3.37601 3.42937 3.45545 4.15838 4.27424 4.46834 4.65046 4.79676 4.95600 4.99601 5.01208 5.04060 5.11334 5.17737 5.22933 5.28221 5.30997 5.36471 5.43173 5.45256 5.51175 5.54398 5.59861 5.65828 5.73625 5.77256 5.83607 5.84398 5.97136 6.05658 6.10207 6.11904 6.14696 6.19721 6.27593 6.35406 6.43538 6.57130 6.59277 6.60257 6.77380 7.02562 7.31610 7.52948 7.58480 7.78620 7.90794 8.05142 8.21459 9.16703 9.80327 10.48122 11.38353 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.003149 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.364538 B = 8889.648887 C =10520.925975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 C -0.146 4.146 4 C 0.033 3.967 5 C -0.195 4.195 6 C -0.026 4.026 7 C 0.585 3.415 8 O -0.548 6.548 9 N -0.585 5.585 10 C 0.077 3.923 11 C -0.129 4.129 12 C 0.168 3.832 13 H 0.021 0.979 14 C -0.124 4.124 15 H 0.079 0.921 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.594 5.594 19 C -0.225 4.225 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.128 3.872 28 N -0.261 5.261 29 C 0.094 3.906 30 N -0.279 5.279 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.173 0.827 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.054 0.946 47 H 0.252 0.748 48 H 0.073 0.927 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.094 0.906 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -10.729 -10.978 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.204 4.204 4 C -0.124 4.124 5 C -0.223 4.223 6 C -0.155 4.155 7 C 0.372 3.628 8 O -0.427 6.427 9 N -0.317 5.317 10 C -0.045 4.045 11 C -0.168 4.168 12 C 0.060 3.940 13 H 0.038 0.962 14 C -0.145 4.145 15 H 0.098 0.902 16 C -0.174 4.174 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.353 4.353 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.007 3.993 28 N -0.047 5.047 29 C -0.047 4.047 30 N -0.112 5.112 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.190 0.810 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.110 0.890 50 H 0.105 0.895 51 H 0.112 0.888 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.822 -12.214 -11.120 21.538 hybrid contribution 0.568 1.464 0.150 1.578 sum -13.254 -10.749 -10.970 20.287 Atomic orbital electron populations 1.21817 0.94017 1.02031 1.02102 1.19419 0.95551 0.95081 0.92855 1.21850 1.01658 0.94508 1.02367 1.21969 1.04024 0.89997 0.96404 1.22416 1.07444 0.99731 0.92702 1.21419 1.11039 0.88929 0.94113 1.16996 0.77518 0.83697 0.84613 1.90783 1.54551 1.35164 1.62181 1.48008 1.65004 1.07643 1.11012 1.22688 0.99217 0.86036 0.96599 1.21820 0.95868 1.00037 0.99098 1.20636 0.91555 0.89806 0.92052 0.96221 1.22637 0.95382 0.97784 0.98677 0.90237 1.22719 1.00127 0.99881 0.94717 1.21523 0.95817 0.90619 0.86764 1.44209 1.30687 1.38391 1.18596 1.19040 1.07737 1.07988 1.00576 0.90288 1.24796 0.98603 0.99946 0.97113 1.69947 1.26145 1.43705 1.17055 0.86083 0.79361 0.81745 0.78808 1.20491 1.21783 1.21823 1.21716 0.96320 1.02286 0.79028 1.45488 1.44713 1.09451 1.05062 1.22187 1.01850 0.78906 1.01709 1.73098 1.17283 1.17834 1.02959 0.92017 0.92304 0.92663 0.89891 0.92033 0.92112 0.91888 0.80982 0.87257 0.91301 0.90318 0.91498 0.92264 0.92034 0.94335 0.92739 0.93804 0.90895 0.89048 0.89519 0.88751 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 37.16 0.34 -0.74 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.15 -1.11 8.79 37.16 0.33 -0.78 16 4 C 0.03 0.38 6.13 -82.47 -0.51 -0.12 16 5 C -0.19 -2.28 7.79 -38.98 -0.30 -2.58 16 6 C -0.03 -0.36 6.57 -82.06 -0.54 -0.90 16 7 C 0.59 8.73 7.49 -12.64 -0.09 8.63 16 8 O -0.55 -9.20 14.93 5.25 0.08 -9.12 16 9 N -0.59 -8.37 3.01 -174.11 -0.52 -8.89 16 10 C 0.08 1.00 5.09 -3.71 -0.02 0.98 16 11 C -0.13 -2.11 5.46 -27.20 -0.15 -2.26 16 12 C 0.17 3.23 2.57 -67.98 -0.17 3.06 16 13 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 14 C -0.12 -2.15 2.85 -89.37 -0.26 -2.40 16 15 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 16 C -0.14 -2.44 6.54 -25.14 -0.16 -2.61 16 17 C 0.18 4.17 5.45 -1.92 -0.01 4.16 16 18 N -0.59 -14.46 3.35 -163.09 -0.55 -15.01 16 19 C -0.23 -6.00 9.88 -15.06 -0.15 -6.15 16 20 H 0.08 2.02 7.21 -52.49 -0.38 1.64 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.59 10.44 55.49 0.58 -26.01 16 23 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.13 1.89 5.96 -3.76 -0.02 1.86 16 28 N -0.26 -3.37 3.75 -63.88 -0.24 -3.61 16 29 C 0.09 0.93 10.52 59.84 0.63 1.56 16 30 N -0.28 -3.64 11.90 33.64 0.40 -3.24 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.17 1.68 5.27 -52.49 -0.28 1.40 16 39 H 0.11 1.28 3.48 -51.92 -0.18 1.09 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.29 7.62 -51.93 -0.40 0.89 16 42 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 43 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 46 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 49 H 0.09 1.36 7.00 -51.92 -0.36 1.00 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 52 H 0.10 1.01 7.34 -51.93 -0.38 0.63 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -32.07 397.76 -9.37 -41.44 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.60 Total: 0.82 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.49 Total: 0.99 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.33 Total: -56.76 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.07 -9.37 -41.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036858618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.071 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds