Wall clock time and date at job start Wed Apr 1 2020 04:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 C 1.50694 * 109.47019 * 120.00365 * 2 1 3 5 5 C 1.39679 * 126.06948 * 274.99532 * 4 2 1 6 6 C 1.38405 * 105.36009 * 179.97438 * 5 4 2 7 7 C 1.47155 * 126.88150 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00149 * 155.21820 * 7 6 5 9 9 N 1.34776 * 120.00359 * 335.21754 * 7 6 5 10 10 C 1.46594 * 119.68504 * 0.30342 * 9 7 6 11 11 C 1.53537 * 110.82044 * 227.73153 * 10 9 7 12 12 C 1.51518 * 107.42388 * 309.21934 * 11 10 9 13 13 H 1.09000 * 108.81673 * 306.40566 * 12 11 10 14 14 C 1.55367 * 107.78358 * 64.70839 * 12 11 10 15 15 H 1.09000 * 112.27494 * 50.83976 * 14 12 11 16 16 C 1.53737 * 100.22455 * 169.05821 * 14 12 11 17 17 C 1.55283 * 101.84469 * 320.91129 * 16 14 12 18 18 N 1.45469 * 117.34059 * 181.74250 * 12 11 10 19 19 C 1.36937 * 126.40390 * 30.65005 * 18 12 11 20 20 H 1.07995 * 119.99995 * 359.97438 * 19 18 12 21 21 C 1.38816 * 119.99836 * 179.97438 * 19 18 12 22 22 N 1.31620 * 120.00104 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99698 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47504 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47278 * 120.00110 * 23 21 19 26 26 H 1.48500 * 109.47070 * 239.99910 * 23 21 19 27 27 C 1.47722 * 119.68993 * 180.57678 * 9 7 6 28 28 N 1.36599 * 106.23274 * 0.02562 * 6 5 4 29 29 C 1.46494 * 125.19006 * 179.97438 * 28 6 5 30 30 N 1.28440 * 109.61839 * 359.76620 * 28 6 5 31 31 H 1.09004 * 109.47568 * 59.99898 * 1 2 3 32 32 H 1.08996 * 109.47258 * 299.99737 * 1 2 3 33 33 H 1.09011 * 109.47061 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46913 * 240.00166 * 2 1 3 35 35 H 1.09003 * 109.46520 * 59.99822 * 3 2 1 36 36 H 1.08997 * 109.47170 * 180.02562 * 3 2 1 37 37 H 1.08991 * 109.47303 * 300.00372 * 3 2 1 38 38 H 1.07999 * 127.31636 * 359.95209 * 5 4 2 39 39 H 1.09008 * 109.25393 * 348.10465 * 10 9 7 40 40 H 1.09004 * 109.25757 * 107.52984 * 10 9 7 41 41 H 1.08994 * 109.96573 * 189.66230 * 11 10 9 42 42 H 1.09004 * 109.77803 * 68.66669 * 11 10 9 43 43 H 1.09005 * 110.95586 * 79.05179 * 16 14 12 44 44 H 1.09006 * 110.95596 * 202.77005 * 16 14 12 45 45 H 1.08995 * 109.92220 * 141.83005 * 17 16 14 46 46 H 1.09006 * 109.91748 * 262.93034 * 17 16 14 47 47 H 0.96995 * 119.99889 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.06813 * 247.15905 * 27 9 7 49 49 H 1.09008 * 110.06576 * 8.72878 * 27 9 7 50 50 H 1.09005 * 109.47171 * 84.56913 * 29 28 6 51 51 H 1.09002 * 109.47384 * 204.56867 * 29 28 6 52 52 H 1.09007 * 109.47395 * 324.56902 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2137 -0.1405 2.4926 6 6 2.6848 -1.1662 3.2937 7 6 3.0335 -1.0831 4.7209 8 8 2.9998 -2.0819 5.4143 9 7 3.3901 0.0996 5.2599 10 6 3.4220 1.3002 4.4194 11 6 4.7313 2.0755 4.6246 12 6 4.9153 2.2684 6.1162 13 1 4.0162 2.7301 6.5245 14 6 5.1050 0.8655 6.7563 15 1 5.8724 0.2804 6.2494 16 6 5.5535 1.2691 8.1703 17 6 6.4762 2.4834 7.8776 18 7 6.0818 3.0193 6.5538 19 6 6.6998 4.0321 5.8701 20 1 6.3232 4.3414 4.9064 21 6 7.8105 4.6611 6.4159 22 7 8.2692 4.2844 7.5906 23 14 8.6530 6.0432 5.4835 24 1 7.9472 6.2753 4.1978 25 1 8.6169 7.2840 6.2985 26 1 10.0646 5.6693 5.2134 27 6 3.7511 0.1726 6.6904 28 7 2.7613 -2.2709 2.4939 29 6 3.2141 -3.5957 2.9253 30 7 2.3717 -1.9720 1.3071 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0278 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6765 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8899 38 1 2.0265 0.8830 2.7819 39 1 3.3383 1.0085 3.3724 40 1 2.5822 1.9443 4.6805 41 1 4.6713 3.0449 4.1300 42 1 5.5660 1.5036 4.2191 43 1 4.7001 1.5660 8.7801 44 1 6.1101 0.4627 8.6478 45 1 6.3392 3.2470 8.6432 46 1 7.5175 2.1618 7.8562 47 1 9.0454 4.7237 7.9717 48 1 3.0066 0.7536 7.2348 49 1 3.8236 -0.8310 7.1096 50 1 2.3800 -4.1372 3.3716 51 1 3.5881 -4.1500 2.0645 52 1 4.0111 -3.4857 3.6608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036858618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:49 Heat of formation + Delta-G solvation = 65.045621 kcal Electronic energy + Delta-G solvation = -31908.897549 eV Core-core repulsion = 27910.590021 eV Total energy + Delta-G solvation = -3998.307528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.71925 -41.37017 -39.63134 -37.17683 -36.66437 -34.68300 -33.34357 -33.12947 -32.46097 -31.08647 -29.49543 -28.02901 -27.70521 -26.81187 -25.68932 -24.23115 -23.46292 -23.03289 -21.91820 -21.47181 -20.91807 -19.69105 -18.72443 -17.93161 -17.69964 -17.31482 -17.01894 -16.70505 -16.24087 -16.00937 -15.71883 -15.48374 -15.17564 -15.02073 -14.83282 -14.70291 -14.27613 -14.04691 -14.03797 -13.82609 -13.57399 -13.38400 -13.31699 -13.09887 -13.03320 -12.83038 -12.71872 -12.42969 -12.28789 -12.16844 -11.99799 -11.96794 -11.95408 -11.79254 -11.61105 -11.52981 -11.34367 -11.17572 -10.95364 -10.70299 -10.16356 -9.85963 -9.73591 -8.85516 -7.81865 -5.15964 0.20110 1.24947 1.47706 1.47891 1.52275 1.57907 1.94457 2.03080 2.52006 3.19889 3.37418 3.38748 3.50567 3.81660 3.85182 3.91699 3.99149 4.13791 4.17733 4.21198 4.24851 4.29371 4.35093 4.39044 4.43983 4.52502 4.55211 4.57483 4.65737 4.68952 4.71556 4.80955 4.83317 4.90355 4.93319 5.02120 5.08117 5.08791 5.11915 5.20900 5.24651 5.41689 5.44446 5.49506 5.53815 5.54922 5.56157 5.67474 5.71620 5.78354 6.18263 6.22585 6.86195 7.05109 7.11294 7.81635 8.50087 9.30275 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.003149 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.364538 B = 8889.648887 C =10520.925975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.145 4.145 4 C 0.029 3.971 5 C -0.188 4.188 6 C -0.048 4.048 7 C 0.587 3.413 8 O -0.571 6.571 9 N -0.586 5.586 10 C 0.086 3.914 11 C -0.122 4.122 12 C 0.158 3.842 13 H 0.028 0.972 14 C -0.110 4.110 15 H 0.060 0.940 16 C -0.121 4.121 17 C 0.182 3.818 18 N -0.615 5.615 19 C -0.226 4.226 20 H 0.090 0.910 21 C -0.072 4.072 22 N -0.955 5.955 23 Si 0.972 3.028 24 H -0.261 1.261 25 H -0.296 1.296 26 H -0.298 1.298 27 C 0.137 3.863 28 N -0.268 5.268 29 C 0.089 3.911 30 N -0.295 5.295 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.194 0.806 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.005 0.995 46 H 0.015 0.985 47 H 0.244 0.756 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.113 0.887 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 -10.598 -12.831 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.127 4.127 5 C -0.216 4.216 6 C -0.177 4.177 7 C 0.374 3.626 8 O -0.451 6.451 9 N -0.317 5.317 10 C -0.036 4.036 11 C -0.161 4.161 12 C 0.051 3.949 13 H 0.046 0.954 14 C -0.130 4.130 15 H 0.079 0.921 16 C -0.159 4.159 17 C 0.057 3.943 18 N -0.340 5.340 19 C -0.355 4.355 20 H 0.107 0.893 21 C -0.264 4.264 22 N -0.605 5.605 23 Si 0.801 3.199 24 H -0.185 1.185 25 H -0.223 1.223 26 H -0.226 1.226 27 C 0.015 3.985 28 N -0.055 5.055 29 C -0.050 4.050 30 N -0.128 5.128 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.211 0.789 39 H 0.144 0.856 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.023 0.977 46 H 0.033 0.967 47 H 0.053 0.947 48 H 0.110 0.890 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.132 0.868 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.190 -12.098 -13.006 24.035 hybrid contribution 1.268 1.386 0.690 2.001 sum -14.922 -10.712 -12.316 22.116 Atomic orbital electron populations 1.21794 0.93016 1.01664 1.03107 1.19546 0.96291 0.95515 0.91552 1.21857 1.01074 0.93751 1.03550 1.22490 1.03233 0.89651 0.97359 1.22685 1.06325 1.00233 0.92338 1.21407 1.12576 0.90008 0.93707 1.17146 0.77032 0.83327 0.85067 1.90767 1.55626 1.35890 1.62863 1.48022 1.64836 1.07972 1.10897 1.22747 0.97908 0.85489 0.97427 1.21736 0.97201 1.00454 0.96682 1.20890 0.89717 0.90045 0.94286 0.95433 1.22460 0.96529 0.96665 0.97384 0.92148 1.22584 0.99811 0.97731 0.95800 1.21290 0.95162 0.91769 0.86098 1.44500 1.31961 1.38604 1.18921 1.19463 1.07335 1.07923 1.00778 0.89271 1.25616 0.99889 1.02734 0.98165 1.70171 1.26509 1.45069 1.18720 0.85083 0.77871 0.78642 0.78259 1.18460 1.22288 1.22556 1.21608 0.94884 1.02240 0.79756 1.45755 1.44748 1.10062 1.04975 1.22336 1.01924 0.78309 1.02447 1.73102 1.17788 1.18775 1.03124 0.90169 0.92153 0.93715 0.89967 0.91352 0.93017 0.90283 0.78916 0.85648 0.88682 0.90106 0.93394 0.90023 0.90480 0.97708 0.96714 0.94703 0.88957 0.88949 0.88838 0.86808 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.17 71.98 0.66 -1.08 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -1.76 8.79 71.98 0.63 -1.13 16 4 C 0.03 0.61 6.13 43.05 0.26 0.88 16 5 C -0.19 -3.90 7.79 22.66 0.18 -3.72 16 6 C -0.05 -1.22 6.57 40.78 0.27 -0.96 16 7 C 0.59 16.45 7.49 86.58 0.65 17.10 16 8 O -0.57 -18.48 14.93 -4.13 -0.06 -18.54 16 9 N -0.59 -15.33 3.01 -823.00 -2.47 -17.81 16 10 C 0.09 1.96 5.09 86.54 0.44 2.40 16 11 C -0.12 -3.76 5.46 30.29 0.17 -3.60 16 12 C 0.16 5.87 2.57 45.51 0.12 5.99 16 13 H 0.03 1.03 7.92 -2.39 -0.02 1.01 16 14 C -0.11 -3.67 2.85 -9.98 -0.03 -3.70 16 15 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 16 C -0.12 -4.26 6.54 31.63 0.21 -4.05 16 17 C 0.18 8.84 5.45 86.84 0.47 9.32 16 18 N -0.62 -30.25 3.35 -669.91 -2.24 -32.49 16 19 C -0.23 -12.12 9.88 84.03 0.83 -11.29 16 20 H 0.09 4.48 7.21 -2.91 -0.02 4.46 16 21 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 22 N -0.95 -57.39 10.44 21.65 0.23 -57.16 16 23 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 27 C 0.14 3.70 5.96 85.89 0.51 4.21 16 28 N -0.27 -6.59 3.75 -356.03 -1.33 -7.93 16 29 C 0.09 1.69 10.52 127.77 1.34 3.04 16 30 N -0.30 -7.24 11.90 -47.49 -0.57 -7.80 16 31 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 0.74 7.37 -2.39 -0.02 0.72 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.19 3.02 5.27 -2.91 -0.02 3.00 16 39 H 0.13 2.51 3.48 -2.38 -0.01 2.51 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.08 2.47 7.62 -2.39 -0.02 2.45 16 42 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 43 H 0.08 2.54 8.12 -2.38 -0.02 2.52 16 44 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.00 0.25 7.77 -2.39 -0.02 0.24 16 46 H 0.01 0.81 7.21 -2.38 -0.02 0.80 16 47 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 49 H 0.09 2.55 7.00 -2.38 -0.02 2.54 16 50 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 51 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.09 1.83 7.34 -2.38 -0.02 1.81 16 Total: -1.00 -71.60 397.76 3.62 -67.98 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.91 Total: 16.91 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 7.14 Total: 9.68 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -6.39 Total: -123.19 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.06 Total: -18.54 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -71.60 3.62 -67.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036858618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.023 kcal (2) G-P(sol) polarization free energy of solvation -71.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds