Wall clock time and date at job start Wed Apr 1 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47143 * 2 1 4 4 C 1.53005 * 109.47193 * 240.00361 * 2 1 3 5 5 C 1.50693 * 109.47316 * 120.00056 * 2 1 3 6 6 N 1.30454 * 125.98921 * 231.81328 * 5 2 1 7 7 N 1.39943 * 108.89322 * 180.02562 * 6 5 2 8 8 H 0.97004 * 125.74941 * 179.97438 * 7 6 5 9 9 C 1.34255 * 108.49293 * 359.75274 * 7 6 5 10 10 C 1.38041 * 107.41889 * 0.39525 * 9 7 6 11 11 C 1.47426 * 126.41747 * 179.87295 * 10 9 7 12 12 O 1.21602 * 120.00268 * 236.09198 * 11 10 9 13 13 N 1.34782 * 120.00069 * 56.08835 * 11 10 9 14 14 C 1.46604 * 119.68129 * 354.78789 * 13 11 10 15 15 C 1.53949 * 110.57434 * 132.20061 * 14 13 11 16 16 C 1.51520 * 107.34830 * 51.05165 * 15 14 13 17 17 H 1.08997 * 109.28251 * 53.70659 * 16 15 14 18 18 C 1.55358 * 107.79297 * 295.14284 * 16 15 14 19 19 H 1.09006 * 111.51154 * 309.38301 * 18 16 15 20 20 C 1.53743 * 100.22115 * 191.48555 * 18 16 15 21 21 C 1.55286 * 101.87739 * 39.07542 * 20 18 16 22 22 N 1.45473 * 116.86796 * 178.39308 * 16 15 14 23 23 C 1.36937 * 126.40290 * 329.06242 * 22 16 15 24 24 H 1.08000 * 120.00389 * 356.00483 * 23 22 16 25 25 C 1.38816 * 119.99755 * 176.00989 * 23 22 16 26 26 N 1.31620 * 119.99988 * 7.35735 * 25 23 22 27 27 Si 1.86799 * 120.00164 * 187.35464 * 25 23 22 28 28 H 1.48500 * 109.47154 * 94.98375 * 27 25 23 29 29 H 1.48495 * 109.47274 * 214.98634 * 27 25 23 30 30 H 1.48504 * 109.46834 * 334.98690 * 27 25 23 31 31 C 1.48907 * 119.82563 * 175.13329 * 13 11 10 32 32 H 1.08992 * 109.47059 * 303.53532 * 1 2 3 33 33 H 1.09005 * 109.47026 * 63.53611 * 1 2 3 34 34 H 1.09001 * 109.47045 * 183.52953 * 1 2 3 35 35 H 1.08995 * 109.47129 * 180.02562 * 3 2 1 36 36 H 1.08992 * 109.47314 * 300.00076 * 3 2 1 37 37 H 1.08997 * 109.46444 * 59.99965 * 3 2 1 38 38 H 1.08997 * 109.46700 * 313.45760 * 4 2 1 39 39 H 1.08994 * 109.46943 * 73.45474 * 4 2 1 40 40 H 1.09003 * 109.46750 * 193.45887 * 4 2 1 41 41 H 1.08003 * 126.29056 * 180.23844 * 9 7 6 42 42 H 1.08996 * 109.25431 * 11.91969 * 14 13 11 43 43 H 1.08997 * 109.22330 * 252.46145 * 14 13 11 44 44 H 1.09003 * 109.88450 * 291.59564 * 15 14 13 45 45 H 1.09006 * 109.94584 * 170.55042 * 15 14 13 46 46 H 1.09001 * 110.95473 * 157.23795 * 20 18 16 47 47 H 1.08999 * 110.95426 * 280.92022 * 20 18 16 48 48 H 1.08997 * 109.92173 * 96.88637 * 21 20 18 49 49 H 1.08994 * 109.92131 * 218.19237 * 21 20 18 50 50 H 0.97003 * 120.00377 * 180.02562 * 26 25 23 51 51 H 1.09005 * 110.81329 * 112.98466 * 31 13 11 52 52 H 1.09006 * 109.91885 * 351.01873 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 2.9031 -0.2445 2.0827 7 7 3.1097 -1.1977 3.0863 8 1 3.7092 -1.1032 3.8429 9 6 2.3345 -2.2630 2.8278 10 6 1.6433 -1.9981 1.6627 11 6 0.6754 -2.8892 0.9974 12 8 0.8434 -3.2111 -0.1632 13 7 -0.3956 -3.3472 1.6754 14 6 -0.5317 -3.0495 3.1045 15 6 -1.9488 -2.5359 3.4175 16 6 -2.9298 -3.5239 2.8196 17 1 -2.6978 -4.5254 3.1818 18 6 -2.7594 -3.4868 1.2758 19 1 -2.7965 -2.4664 0.8940 20 6 -3.9978 -4.2897 0.8453 21 6 -5.0696 -3.7874 1.8504 22 7 -4.3440 -3.2538 3.0275 23 6 -4.9009 -2.6255 4.1093 24 1 -4.2800 -2.3348 4.9437 25 6 -6.2637 -2.3624 4.1334 26 7 -7.0435 -2.8424 3.1879 27 14 -6.9909 -1.3272 5.5078 28 1 -7.0851 0.0872 5.0653 29 1 -8.3464 -1.8321 5.8437 30 1 -6.1192 -1.4137 6.7069 31 6 -1.4272 -4.1576 0.9708 32 1 -0.3633 0.5677 0.8565 33 1 -0.3633 0.4580 -0.9200 34 1 -0.3633 -1.0257 0.0633 35 1 3.1299 1.4426 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.4947 -1.6563 -1.3770 39 1 1.8852 -0.0881 -2.1229 40 1 3.1034 -0.9330 -1.1378 41 1 2.2663 -3.1629 3.4210 42 1 0.1965 -2.2881 3.3840 43 1 -0.3427 -3.9560 3.6795 44 1 -2.0940 -1.5526 2.9701 45 1 -2.0931 -2.4770 4.4964 46 1 -4.2812 -4.0495 -0.1795 47 1 -3.8274 -5.3602 0.9597 48 1 -5.6666 -2.9983 1.3932 49 1 -5.7118 -4.6146 2.1527 50 1 -7.9957 -2.6583 3.2046 51 1 -1.4320 -5.1835 1.3392 52 1 -1.2394 -4.1453 -0.1029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036867462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:53 Heat of formation + Delta-G solvation = 63.335417 kcal Electronic energy + Delta-G solvation = -32635.643021 eV Core-core repulsion = 28637.261333 eV Total energy + Delta-G solvation = -3998.381688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.76195 -39.77636 -38.07992 -36.82586 -35.24180 -32.76960 -31.50900 -31.14939 -30.86747 -29.30000 -27.97998 -27.21414 -27.15052 -25.04276 -23.96129 -22.87858 -22.30543 -22.02680 -20.19387 -19.84779 -19.34525 -18.35446 -17.78166 -16.82653 -16.17800 -15.74293 -15.36219 -15.00364 -14.96559 -14.73211 -14.37512 -14.11936 -13.93849 -13.73439 -13.68606 -13.31016 -13.02476 -12.80191 -12.51407 -12.42735 -12.26018 -12.12636 -11.69190 -11.59642 -11.47792 -11.39067 -11.34027 -11.20662 -11.01594 -10.86504 -10.78493 -10.71628 -10.50129 -10.14146 -10.08614 -9.89756 -9.68419 -9.65294 -9.62054 -9.47112 -8.80191 -8.60340 -8.43966 -6.84367 -5.73911 -3.05145 1.48637 2.19238 2.50927 2.91251 3.27159 3.38523 3.43636 3.45888 4.22363 4.47085 4.49067 4.79945 4.82609 4.97964 5.06258 5.10349 5.18466 5.28556 5.33815 5.37496 5.38304 5.55581 5.58315 5.63414 5.65132 5.68652 5.81041 5.82076 5.90254 5.90617 5.97483 6.01291 6.03497 6.09933 6.16586 6.20016 6.24562 6.32266 6.34996 6.38593 6.46240 6.55174 6.62882 6.66582 6.86487 6.92646 7.08058 7.39719 7.53945 7.57470 7.62615 7.80189 8.23350 8.34668 9.18160 9.82265 10.50826 11.39214 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.003252 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.675230 B = 8608.661248 C = 9030.229271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.012 3.988 3 C -0.136 4.136 4 C -0.146 4.146 5 C 0.139 3.861 6 N -0.293 5.293 7 N -0.466 5.466 8 H 0.442 0.558 9 C 0.093 3.907 10 C -0.271 4.271 11 C 0.594 3.406 12 O -0.540 6.540 13 N -0.603 5.603 14 C 0.108 3.892 15 C -0.128 4.128 16 C 0.168 3.832 17 H 0.019 0.981 18 C -0.123 4.123 19 H 0.080 0.920 20 C -0.136 4.136 21 C 0.177 3.823 22 N -0.595 5.595 23 C -0.226 4.226 24 H 0.078 0.922 25 C -0.006 4.006 26 N -0.919 5.919 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.281 1.281 31 C 0.130 3.870 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.184 0.816 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.038 0.962 50 H 0.252 0.748 51 H 0.070 0.930 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.607 1.439 -3.163 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.010 3.990 3 C -0.193 4.193 4 C -0.204 4.204 5 C -0.029 4.029 6 N -0.114 5.114 7 N -0.171 5.171 8 H 0.287 0.713 9 C -0.058 4.058 10 C -0.286 4.286 11 C 0.382 3.618 12 O -0.418 6.418 13 N -0.336 5.336 14 C -0.015 4.015 15 C -0.167 4.167 16 C 0.060 3.940 17 H 0.036 0.964 18 C -0.144 4.144 19 H 0.099 0.901 20 C -0.175 4.175 21 C 0.052 3.948 22 N -0.320 5.320 23 C -0.354 4.354 24 H 0.096 0.904 25 C -0.202 4.202 26 N -0.566 5.566 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 C 0.009 3.991 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.201 0.799 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.088 0.912 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.200 2.300 -3.360 20.607 hybrid contribution -0.690 -0.144 1.346 1.519 sum 19.511 2.156 -2.015 19.732 Atomic orbital electron populations 1.21916 0.92726 1.02972 1.02224 1.19077 0.95878 0.94516 0.89572 1.21812 1.01356 0.94252 1.01883 1.22043 1.01396 1.02058 0.94873 1.22291 0.93198 0.91946 0.95439 1.77121 1.21104 1.13097 1.00109 1.46063 1.35475 1.12499 1.23015 0.71336 1.23024 0.93115 0.93429 0.96263 1.20195 1.09146 0.98980 1.00246 1.17305 0.80236 0.78753 0.85519 1.90690 1.75562 1.58612 1.16910 1.48513 1.22186 1.52513 1.10361 1.21870 0.98901 1.00332 0.80406 1.21874 0.92829 1.00309 1.01701 1.20638 0.86277 0.95225 0.91861 0.96383 1.22632 0.92847 0.99973 0.98930 0.90144 1.22712 0.96344 0.98621 0.99809 1.21536 0.90781 0.97363 0.85091 1.44223 0.99416 1.68117 1.20235 1.18977 0.91439 1.30022 0.94986 0.90438 1.24788 0.96156 1.00821 0.98481 1.69954 1.04024 1.48036 1.34569 0.86187 0.78565 0.80370 0.81191 1.21680 1.21809 1.20704 1.21820 0.85838 0.93553 0.97908 0.92470 0.91615 0.91766 0.92261 0.92213 0.92416 0.89292 0.92374 0.93110 0.79881 0.90183 0.91958 0.91405 0.90807 0.92055 0.92354 0.92814 0.94407 0.93767 0.91155 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.27 37.16 0.31 -1.49 16 2 C 0.01 0.14 0.84 -155.66 -0.13 0.01 16 3 C -0.14 -1.44 7.94 37.16 0.30 -1.14 16 4 C -0.15 -1.76 8.48 37.16 0.32 -1.45 16 5 C 0.14 1.80 5.60 -82.02 -0.46 1.34 16 6 N -0.29 -3.54 11.94 33.90 0.40 -3.13 16 7 N -0.47 -4.06 7.29 30.85 0.22 -3.84 16 8 H 0.44 2.21 8.96 -182.71 -1.64 0.57 16 9 C 0.09 0.86 9.84 -16.56 -0.16 0.69 16 10 C -0.27 -3.41 4.73 -105.07 -0.50 -3.91 16 11 C 0.59 8.54 5.24 -12.52 -0.07 8.47 16 12 O -0.54 -9.02 13.62 5.28 0.07 -8.95 16 13 N -0.60 -8.35 3.01 -172.75 -0.52 -8.87 16 14 C 0.11 1.37 5.88 -3.49 -0.02 1.35 16 15 C -0.13 -2.10 5.47 -26.98 -0.15 -2.25 16 16 C 0.17 3.23 2.57 -67.98 -0.17 3.06 16 17 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 18 C -0.12 -2.11 2.84 -89.37 -0.25 -2.37 16 19 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 20 C -0.14 -2.45 6.53 -25.13 -0.16 -2.61 16 21 C 0.18 4.16 5.46 -1.88 -0.01 4.15 16 22 N -0.60 -14.49 3.35 -163.05 -0.55 -15.03 16 23 C -0.23 -6.04 9.83 -15.06 -0.15 -6.19 16 24 H 0.08 1.99 7.24 -52.49 -0.38 1.61 16 25 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 26 N -0.92 -26.54 10.49 55.49 0.58 -25.96 16 27 Si 0.91 21.70 29.56 -169.99 -5.02 16.67 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 31 C 0.13 1.90 6.02 -3.10 -0.02 1.88 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.94 5.60 -51.93 -0.29 0.65 16 35 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.26 5.35 -51.93 -0.28 0.98 16 39 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.05 0.61 8.07 -51.93 -0.42 0.19 16 41 H 0.18 1.06 7.99 -52.48 -0.42 0.64 16 42 H 0.08 0.90 4.96 -51.93 -0.26 0.64 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 45 H 0.07 1.23 7.60 -51.93 -0.39 0.84 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 48 H 0.05 1.42 7.20 -51.93 -0.37 1.04 16 49 H 0.04 0.98 7.80 -51.93 -0.41 0.57 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 52 H 0.09 1.34 7.06 -51.93 -0.37 0.97 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -32.51 393.16 -10.15 -42.65 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -9.83 Total: 1.24 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.43 Total: -0.71 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.14 Total: -56.83 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.51 -10.15 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036867462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.990 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds