Wall clock time and date at job start Wed Apr 1 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47143 * 2 1 4 4 C 1.53005 * 109.47193 * 240.00361 * 2 1 3 5 5 C 1.50693 * 109.47316 * 120.00056 * 2 1 3 6 6 N 1.30454 * 125.98921 * 231.81328 * 5 2 1 7 7 N 1.39943 * 108.89322 * 180.02562 * 6 5 2 8 8 H 0.97004 * 125.74941 * 179.97438 * 7 6 5 9 9 C 1.34255 * 108.49293 * 359.75274 * 7 6 5 10 10 C 1.38041 * 107.41889 * 0.39525 * 9 7 6 11 11 C 1.47426 * 126.41747 * 179.87295 * 10 9 7 12 12 O 1.21602 * 120.00268 * 236.09198 * 11 10 9 13 13 N 1.34782 * 120.00069 * 56.08835 * 11 10 9 14 14 C 1.46604 * 119.68129 * 354.78789 * 13 11 10 15 15 C 1.53949 * 110.57434 * 132.20061 * 14 13 11 16 16 C 1.51520 * 107.34830 * 51.05165 * 15 14 13 17 17 H 1.08997 * 109.28251 * 53.70659 * 16 15 14 18 18 C 1.55358 * 107.79297 * 295.14284 * 16 15 14 19 19 H 1.09006 * 111.51154 * 309.38301 * 18 16 15 20 20 C 1.53743 * 100.22115 * 191.48555 * 18 16 15 21 21 C 1.55286 * 101.87739 * 39.07542 * 20 18 16 22 22 N 1.45473 * 116.86796 * 178.39308 * 16 15 14 23 23 C 1.36937 * 126.40290 * 329.06242 * 22 16 15 24 24 H 1.08000 * 120.00389 * 356.00483 * 23 22 16 25 25 C 1.38816 * 119.99755 * 176.00989 * 23 22 16 26 26 N 1.31620 * 119.99988 * 7.35735 * 25 23 22 27 27 Si 1.86799 * 120.00164 * 187.35464 * 25 23 22 28 28 H 1.48500 * 109.47154 * 94.98375 * 27 25 23 29 29 H 1.48495 * 109.47274 * 214.98634 * 27 25 23 30 30 H 1.48504 * 109.46834 * 334.98690 * 27 25 23 31 31 C 1.48907 * 119.82563 * 175.13329 * 13 11 10 32 32 H 1.08992 * 109.47059 * 303.53532 * 1 2 3 33 33 H 1.09005 * 109.47026 * 63.53611 * 1 2 3 34 34 H 1.09001 * 109.47045 * 183.52953 * 1 2 3 35 35 H 1.08995 * 109.47129 * 180.02562 * 3 2 1 36 36 H 1.08992 * 109.47314 * 300.00076 * 3 2 1 37 37 H 1.08997 * 109.46444 * 59.99965 * 3 2 1 38 38 H 1.08997 * 109.46700 * 313.45760 * 4 2 1 39 39 H 1.08994 * 109.46943 * 73.45474 * 4 2 1 40 40 H 1.09003 * 109.46750 * 193.45887 * 4 2 1 41 41 H 1.08003 * 126.29056 * 180.23844 * 9 7 6 42 42 H 1.08996 * 109.25431 * 11.91969 * 14 13 11 43 43 H 1.08997 * 109.22330 * 252.46145 * 14 13 11 44 44 H 1.09003 * 109.88450 * 291.59564 * 15 14 13 45 45 H 1.09006 * 109.94584 * 170.55042 * 15 14 13 46 46 H 1.09001 * 110.95473 * 157.23795 * 20 18 16 47 47 H 1.08999 * 110.95426 * 280.92022 * 20 18 16 48 48 H 1.08997 * 109.92173 * 96.88637 * 21 20 18 49 49 H 1.08994 * 109.92131 * 218.19237 * 21 20 18 50 50 H 0.97003 * 120.00377 * 180.02562 * 26 25 23 51 51 H 1.09005 * 110.81329 * 112.98466 * 31 13 11 52 52 H 1.09006 * 109.91885 * 351.01873 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 2.9031 -0.2445 2.0827 7 7 3.1097 -1.1977 3.0863 8 1 3.7092 -1.1032 3.8429 9 6 2.3345 -2.2630 2.8278 10 6 1.6433 -1.9981 1.6627 11 6 0.6754 -2.8892 0.9974 12 8 0.8434 -3.2111 -0.1632 13 7 -0.3956 -3.3472 1.6754 14 6 -0.5317 -3.0495 3.1045 15 6 -1.9488 -2.5359 3.4175 16 6 -2.9298 -3.5239 2.8196 17 1 -2.6978 -4.5254 3.1818 18 6 -2.7594 -3.4868 1.2758 19 1 -2.7965 -2.4664 0.8940 20 6 -3.9978 -4.2897 0.8453 21 6 -5.0696 -3.7874 1.8504 22 7 -4.3440 -3.2538 3.0275 23 6 -4.9009 -2.6255 4.1093 24 1 -4.2800 -2.3348 4.9437 25 6 -6.2637 -2.3624 4.1334 26 7 -7.0435 -2.8424 3.1879 27 14 -6.9909 -1.3272 5.5078 28 1 -7.0851 0.0872 5.0653 29 1 -8.3464 -1.8321 5.8437 30 1 -6.1192 -1.4137 6.7069 31 6 -1.4272 -4.1576 0.9708 32 1 -0.3633 0.5677 0.8565 33 1 -0.3633 0.4580 -0.9200 34 1 -0.3633 -1.0257 0.0633 35 1 3.1299 1.4426 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.4947 -1.6563 -1.3770 39 1 1.8852 -0.0881 -2.1229 40 1 3.1034 -0.9330 -1.1378 41 1 2.2663 -3.1629 3.4210 42 1 0.1965 -2.2881 3.3840 43 1 -0.3427 -3.9560 3.6795 44 1 -2.0940 -1.5526 2.9701 45 1 -2.0931 -2.4770 4.4964 46 1 -4.2812 -4.0495 -0.1795 47 1 -3.8274 -5.3602 0.9597 48 1 -5.6666 -2.9983 1.3932 49 1 -5.7118 -4.6146 2.1527 50 1 -7.9957 -2.6583 3.2046 51 1 -1.4320 -5.1835 1.3392 52 1 -1.2394 -4.1453 -0.1029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036867462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:51 Heat of formation + Delta-G solvation = 43.055240 kcal Electronic energy + Delta-G solvation = -32636.522435 eV Core-core repulsion = 28637.261333 eV Total energy + Delta-G solvation = -3999.261103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.61996 -41.01731 -39.41271 -37.75915 -36.61394 -34.53564 -32.95877 -32.11579 -31.88432 -30.81283 -29.42855 -28.17924 -28.05014 -26.70125 -25.39996 -23.85821 -23.54999 -23.08195 -21.84698 -21.13395 -20.54352 -19.25841 -18.87035 -18.30888 -17.53628 -16.94580 -16.68747 -16.34272 -15.98049 -15.87393 -15.74456 -15.56651 -15.11691 -15.00555 -14.67091 -14.58039 -14.25074 -14.03623 -13.92802 -13.72356 -13.32557 -13.22251 -13.09179 -13.00663 -12.97712 -12.69719 -12.57538 -12.43947 -12.25696 -12.09478 -12.06117 -11.97110 -11.94449 -11.74958 -11.57964 -11.47166 -11.39923 -10.96074 -10.78297 -10.65616 -10.47790 -9.69851 -9.54974 -8.84012 -7.82560 -5.14437 0.72518 1.24585 1.46250 1.48095 1.56112 1.74168 1.94902 2.24933 2.52112 3.35789 3.37052 3.51717 3.69628 3.83923 3.90122 4.00075 4.04762 4.07647 4.08771 4.25937 4.27583 4.33210 4.44090 4.48554 4.54737 4.57617 4.69926 4.73248 4.77352 4.79975 4.87094 4.88052 4.89165 4.95698 5.00353 5.03487 5.07810 5.10401 5.13514 5.19572 5.26943 5.36360 5.46515 5.47424 5.52976 5.60274 5.65655 5.70954 5.79919 6.23421 6.32842 6.47910 6.61858 7.11902 7.28154 7.82843 8.52005 9.30143 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.003252 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.675230 B = 8608.661248 C = 9030.229271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 C -0.129 4.129 4 C -0.139 4.139 5 C 0.124 3.876 6 N -0.313 5.313 7 N -0.449 5.449 8 H 0.460 0.540 9 C 0.119 3.881 10 C -0.306 4.306 11 C 0.599 3.401 12 O -0.568 6.568 13 N -0.604 5.604 14 C 0.119 3.881 15 C -0.121 4.121 16 C 0.159 3.841 17 H 0.026 0.974 18 C -0.107 4.107 19 H 0.059 0.941 20 C -0.122 4.122 21 C 0.182 3.818 22 N -0.617 5.617 23 C -0.227 4.227 24 H 0.087 0.913 25 C -0.068 4.068 26 N -0.952 5.952 27 Si 0.969 3.031 28 H -0.292 1.292 29 H -0.298 1.298 30 H -0.264 1.264 31 C 0.139 3.861 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.225 0.775 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.014 0.986 49 H 0.004 0.996 50 H 0.244 0.756 51 H 0.089 0.911 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.549 1.210 -1.842 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 C -0.186 4.186 4 C -0.197 4.197 5 C -0.043 4.043 6 N -0.135 5.135 7 N -0.155 5.155 8 H 0.308 0.692 9 C -0.034 4.034 10 C -0.322 4.322 11 C 0.388 3.612 12 O -0.448 6.448 13 N -0.336 5.336 14 C -0.004 4.004 15 C -0.161 4.161 16 C 0.052 3.948 17 H 0.044 0.956 18 C -0.128 4.128 19 H 0.078 0.922 20 C -0.160 4.160 21 C 0.057 3.943 22 N -0.341 5.341 23 C -0.356 4.356 24 H 0.105 0.895 25 C -0.261 4.261 26 N -0.602 5.602 27 Si 0.798 3.202 28 H -0.220 1.220 29 H -0.225 1.225 30 H -0.189 1.189 31 C 0.017 3.983 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.241 0.759 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.032 0.968 49 H 0.022 0.978 50 H 0.053 0.947 51 H 0.107 0.893 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 23.213 2.086 -2.006 23.393 hybrid contribution -1.559 -0.086 0.959 1.832 sum 21.654 2.000 -1.048 21.772 Atomic orbital electron populations 1.21851 0.93581 1.01489 1.02364 1.19087 0.95133 0.95389 0.89698 1.21748 1.01287 0.93320 1.02251 1.21949 1.00748 1.01320 0.95634 1.22387 0.93662 0.92417 0.95822 1.77064 1.21288 1.14305 1.00883 1.46102 1.35037 1.11701 1.22670 0.69188 1.23546 0.90915 0.94045 0.94895 1.20177 1.10665 0.99091 1.02217 1.17507 0.80339 0.78299 0.85082 1.90678 1.76343 1.59534 1.18226 1.48513 1.21888 1.52406 1.10803 1.21892 0.96470 1.02101 0.79976 1.21790 0.94561 0.98573 1.01145 1.20881 0.84211 0.96122 0.93544 0.95642 1.22449 0.94098 0.99046 0.97190 0.92214 1.22581 0.94749 0.99831 0.98861 1.21303 0.91942 0.94923 0.86165 1.44520 1.01939 1.67867 1.19779 1.19385 0.91656 1.28817 0.95778 0.89549 1.25583 0.96880 1.02574 1.01030 1.70173 1.03642 1.49752 1.36592 0.85189 0.77498 0.78300 0.79213 1.21974 1.22549 1.18874 1.21686 0.84232 0.94148 0.98188 0.93122 0.90747 0.93846 0.92206 0.90908 0.92964 0.91455 0.90899 0.93378 0.75858 0.88250 0.89072 0.93556 0.90931 0.90587 0.90141 0.96779 0.97802 0.94666 0.89280 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.27 71.98 0.60 -2.84 16 2 C 0.01 0.21 0.84 -52.93 -0.04 0.17 16 3 C -0.13 -2.58 7.94 71.99 0.57 -2.01 16 4 C -0.14 -3.27 8.48 71.98 0.61 -2.65 16 5 C 0.12 3.02 5.60 43.51 0.24 3.27 16 6 N -0.31 -6.88 11.94 -46.68 -0.56 -7.44 16 7 N -0.45 -6.23 7.29 -56.32 -0.41 -6.64 16 8 H 0.46 2.77 8.96 -213.42 -1.91 0.86 16 9 C 0.12 1.70 9.84 84.28 0.83 2.53 16 10 C -0.31 -7.00 4.73 -20.15 -0.10 -7.10 16 11 C 0.60 16.12 5.24 86.66 0.45 16.58 16 12 O -0.57 -18.51 13.62 -4.04 -0.06 -18.56 16 13 N -0.60 -15.28 3.01 -818.72 -2.47 -17.75 16 14 C 0.12 2.60 5.88 86.68 0.51 3.11 16 15 C -0.12 -3.80 5.47 30.43 0.17 -3.64 16 16 C 0.16 5.96 2.57 45.51 0.12 6.08 16 17 H 0.03 0.96 7.93 -2.39 -0.02 0.94 16 18 C -0.11 -3.61 2.84 -9.98 -0.03 -3.63 16 19 H 0.06 2.26 8.12 -2.38 -0.02 2.24 16 20 C -0.12 -4.34 6.53 31.63 0.21 -4.13 16 21 C 0.18 8.89 5.46 86.83 0.47 9.36 16 22 N -0.62 -30.50 3.35 -669.77 -2.24 -32.74 16 23 C -0.23 -12.29 9.83 84.03 0.83 -11.47 16 24 H 0.09 4.40 7.24 -2.91 -0.02 4.38 16 25 C -0.07 -3.83 5.48 84.86 0.46 -3.37 16 26 N -0.95 -57.41 10.49 21.65 0.23 -57.18 16 27 Si 0.97 45.38 29.56 68.60 2.03 47.41 16 28 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 30 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 31 C 0.14 3.77 6.02 85.66 0.52 4.29 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.04 1.28 5.60 -2.39 -0.01 1.26 16 35 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.91 5.35 -2.39 -0.01 1.90 16 39 H 0.07 1.43 8.07 -2.39 -0.02 1.41 16 40 H 0.05 1.13 8.07 -2.39 -0.02 1.11 16 41 H 0.23 1.26 7.99 -2.91 -0.02 1.23 16 42 H 0.10 1.84 4.96 -2.39 -0.01 1.83 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 1.64 8.11 -2.39 -0.02 1.62 16 45 H 0.07 2.28 7.60 -2.38 -0.02 2.27 16 46 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.08 2.54 8.11 -2.39 -0.02 2.52 16 48 H 0.01 0.78 7.20 -2.39 -0.02 0.76 16 49 H 0.00 0.21 7.80 -2.39 -0.02 0.19 16 50 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 51 H 0.09 2.13 8.08 -2.38 -0.02 2.11 16 52 H 0.09 2.48 7.06 -2.38 -0.02 2.47 16 Total: -1.00 -74.40 393.16 1.95 -72.45 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.99 Total: 15.90 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.42 Total: 4.56 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -5.45 Total: -121.76 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.06 Total: -18.56 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.40 1.95 -72.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036867462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.506 kcal (2) G-P(sol) polarization free energy of solvation -74.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds