Wall clock time and date at job start Wed Apr 1 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 C 1.52998 * 109.46826 * 120.00063 * 2 1 3 5 5 C 1.50694 * 109.47441 * 64.99917 * 4 2 1 6 6 N 1.30859 * 125.41878 * 305.02826 * 5 4 2 7 7 C 1.33322 * 109.68599 * 179.97438 * 6 5 4 8 8 C 1.36666 * 107.78531 * 359.97438 * 7 6 5 9 9 C 1.46767 * 126.84672 * 180.02562 * 8 7 6 10 10 O 1.21683 * 119.99759 * 354.45512 * 9 8 7 11 11 N 1.34772 * 120.00103 * 174.45151 * 9 8 7 12 12 C 1.47578 * 125.67519 * 184.38107 * 11 9 8 13 13 C 1.55447 * 104.91151 * 156.09354 * 12 11 9 14 14 C 1.53493 * 101.29402 * 35.63715 * 13 12 11 15 15 C 1.53474 * 111.81562 * 204.13517 * 14 13 12 16 16 C 1.54634 * 102.73949 * 272.83642 * 15 14 13 17 17 N 1.47154 * 107.34163 * 339.34293 * 16 15 14 18 18 C 1.36946 * 125.59594 * 179.06311 * 17 16 15 19 19 H 1.07996 * 119.99674 * 179.97438 * 18 17 16 20 20 C 1.38807 * 119.99933 * 359.97438 * 18 17 16 21 21 N 1.31623 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99760 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47272 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47086 * 119.99750 * 22 20 18 25 25 H 1.48500 * 109.47022 * 239.99487 * 22 20 18 26 26 C 1.47747 * 108.80305 * 359.08052 * 17 16 15 27 27 C 1.47444 * 125.67848 * 4.69345 * 11 9 8 28 28 N 1.34499 * 125.41642 * 124.71764 * 5 4 2 29 29 H 0.96998 * 126.47277 * 359.97438 * 28 5 4 30 30 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47482 * 299.99960 * 1 2 3 32 32 H 1.08998 * 109.47021 * 60.00231 * 1 2 3 33 33 H 1.08998 * 109.47247 * 239.99548 * 2 1 3 34 34 H 1.09004 * 109.47012 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47052 * 299.99750 * 3 2 1 36 36 H 1.09000 * 109.46978 * 59.99730 * 3 2 1 37 37 H 1.09006 * 109.46914 * 304.99854 * 4 2 1 38 38 H 1.09001 * 109.47255 * 185.00526 * 4 2 1 39 39 H 1.08001 * 126.11035 * 180.02562 * 7 6 5 40 40 H 1.08999 * 110.32846 * 275.07980 * 12 11 9 41 41 H 1.09003 * 110.32918 * 37.30161 * 12 11 9 42 42 H 1.08999 * 111.23689 * 277.57266 * 13 12 11 43 43 H 1.08997 * 110.96426 * 153.57758 * 13 12 11 44 44 H 1.09001 * 110.75817 * 31.14808 * 15 14 13 45 45 H 1.08997 * 110.75960 * 154.34213 * 15 14 13 46 46 H 1.09004 * 109.87093 * 98.77926 * 16 15 14 47 47 H 1.09000 * 109.87141 * 219.75672 * 16 15 14 48 48 H 0.97002 * 119.99853 * 180.02562 * 21 20 18 49 49 H 1.08999 * 110.40097 * 263.54670 * 26 17 16 50 50 H 1.09001 * 110.39432 * 141.14624 * 26 17 16 51 51 H 1.08997 * 109.99495 * 301.53741 * 27 11 9 52 52 H 1.09005 * 109.99728 * 62.82226 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 7 0.4208 -2.6188 1.0328 7 6 0.4271 -3.9519 1.0235 8 6 1.7203 -4.3644 1.1817 9 6 2.2026 -5.7497 1.2309 10 8 1.4077 -6.6711 1.2269 11 7 3.5257 -6.0013 1.2804 12 6 4.1496 -7.3382 1.2414 13 6 5.5901 -7.0920 0.7117 14 6 5.9193 -5.7375 1.3544 15 6 6.9967 -4.9795 0.5669 16 6 8.3100 -5.5227 1.1763 17 7 7.9817 -6.0849 2.4960 18 6 8.8689 -6.6825 3.3510 19 1 8.5284 -7.0650 4.3018 20 6 10.2058 -6.7967 2.9955 21 7 10.6207 -6.3310 1.8364 22 14 11.4162 -7.6113 4.1621 23 1 10.7035 -8.0472 5.3897 24 1 12.0252 -8.7919 3.4984 25 1 12.4819 -6.6430 4.5251 26 6 6.5376 -5.8990 2.7468 27 6 4.5904 -4.9872 1.3890 28 7 2.4840 -3.2174 1.2812 29 1 3.4461 -3.1734 1.3967 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6053 -0.2617 2.1370 38 1 3.1262 -0.6443 1.2953 39 1 -0.4357 -4.5917 0.9103 40 1 4.1799 -7.7712 2.2412 41 1 3.6030 -7.9915 0.5613 42 1 5.6044 -7.0230 -0.3760 43 1 6.2720 -7.8671 1.0615 44 1 6.9370 -5.2159 -0.4954 45 1 6.9085 -3.9050 0.7276 46 1 8.7222 -6.3011 0.5341 47 1 9.0309 -4.7124 1.2852 48 1 11.5549 -6.4111 1.5879 49 1 6.3679 -5.0030 3.3440 50 1 6.1232 -6.7742 3.2473 51 1 4.5318 -4.2939 0.5500 52 1 4.4930 -4.4436 2.3288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041287051.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:52 Heat of formation + Delta-G solvation = 46.790989 kcal Electronic energy + Delta-G solvation = -31193.999830 eV Core-core repulsion = 27194.900722 eV Total energy + Delta-G solvation = -3999.099108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.53300 -40.26053 -38.46084 -36.62665 -35.81776 -33.23641 -32.64374 -31.13587 -30.24449 -29.60907 -28.51436 -27.33258 -27.20863 -25.77676 -24.28525 -23.24360 -21.90293 -21.38118 -20.82955 -20.40123 -19.74411 -18.92175 -17.83667 -17.03208 -16.34484 -16.22572 -15.86187 -15.30180 -15.24513 -14.87765 -14.52320 -14.41475 -14.13692 -13.90791 -13.86004 -13.53232 -13.39883 -12.87867 -12.79487 -12.62374 -12.56494 -12.50759 -12.18227 -12.10331 -11.65482 -11.53158 -11.45740 -11.26538 -11.14615 -11.00663 -10.99671 -10.86317 -10.49607 -10.36606 -10.30482 -10.14996 -10.05126 -10.00299 -9.87425 -9.76877 -8.92449 -8.70332 -8.57199 -6.95235 -5.81624 -3.15570 1.12913 2.56234 2.59573 2.88531 3.21474 3.33226 3.39591 3.41502 4.00016 4.30490 4.37440 4.46225 4.51014 4.55385 4.70895 4.72379 4.83016 5.06099 5.09511 5.13750 5.21962 5.26088 5.34338 5.35831 5.40256 5.42653 5.48379 5.53608 5.59107 5.61786 5.69026 5.75809 5.77048 5.82038 5.88195 5.92426 6.06640 6.09239 6.14860 6.24453 6.27602 6.32964 6.44662 6.50245 6.52916 6.62039 6.96166 7.31383 7.44963 7.48041 7.69958 7.71924 7.97459 8.13982 9.11445 9.71131 10.35693 11.29981 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002553 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.589009 B =10966.299153 C =12345.403542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.037 4.037 5 C 0.239 3.761 6 N -0.488 5.488 7 C 0.067 3.933 8 C -0.083 4.083 9 C 0.608 3.392 10 O -0.531 6.531 11 N -0.615 5.615 12 C 0.109 3.891 13 C -0.110 4.110 14 C -0.081 4.081 15 C -0.132 4.132 16 C 0.180 3.820 17 N -0.603 5.603 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.151 3.849 27 C 0.105 3.895 28 N -0.553 5.553 29 H 0.423 0.577 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.183 0.817 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.252 0.748 49 H 0.019 0.981 50 H 0.042 0.958 51 H 0.066 0.934 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.305 11.271 -4.759 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.076 4.076 5 C -0.024 4.024 6 N -0.208 5.208 7 C -0.087 4.087 8 C -0.199 4.199 9 C 0.397 3.603 10 O -0.407 6.407 11 N -0.349 5.349 12 C -0.012 4.012 13 C -0.148 4.148 14 C -0.083 4.083 15 C -0.170 4.170 16 C 0.055 3.945 17 N -0.329 5.329 18 C -0.357 4.357 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.024 3.976 27 C -0.018 4.018 28 N -0.161 5.161 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.200 0.800 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.036 0.964 50 H 0.060 0.940 51 H 0.084 0.916 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.254 11.173 -4.825 21.114 hybrid contribution 2.044 -0.815 0.763 2.329 sum -15.210 10.358 -4.062 18.845 Atomic orbital electron populations 1.22079 0.93923 1.04815 1.00770 1.20990 0.97444 0.95553 0.96500 1.21861 1.00925 0.95607 1.02183 1.20281 1.01307 0.85207 1.00800 1.23418 0.85807 0.91691 1.01516 1.70111 1.19705 1.09969 1.20969 1.22666 0.94843 0.91143 1.00013 1.21102 0.93248 0.86637 1.18941 1.16487 0.80750 0.86263 0.76769 1.90845 1.54069 1.44352 1.51472 1.48581 1.04555 1.09250 1.72477 1.22460 0.93355 0.83625 1.01798 1.22610 0.94485 0.97583 1.00147 1.21554 0.92070 0.95368 0.99269 1.22742 0.97045 0.98551 0.98691 1.21204 0.90173 0.97167 0.85932 1.44549 1.01889 1.68905 1.17575 1.19085 0.88306 1.30598 0.97760 0.90393 1.24794 0.97037 1.01120 0.97349 1.69959 1.15103 1.50884 1.20924 0.86053 0.81229 0.78685 0.79842 1.20495 1.21704 1.21728 1.21311 0.86388 0.98146 0.91719 1.22085 0.87650 0.91721 1.00365 1.43894 1.11422 1.06066 1.54741 0.73324 0.89007 0.93053 0.93564 0.91224 0.92627 0.92317 0.92418 0.88620 0.90030 0.79983 0.90919 0.90332 0.90788 0.88402 0.91677 0.92318 0.93347 0.93817 0.93740 0.96381 0.93994 0.91607 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.92 37.16 0.33 -0.95 16 2 C -0.09 -0.61 2.91 -90.62 -0.26 -0.87 16 3 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 4 C -0.04 -0.26 5.32 -27.89 -0.15 -0.41 16 5 C 0.24 2.41 7.36 -155.61 -1.15 1.27 16 6 N -0.49 -5.75 8.51 -10.58 -0.09 -5.84 16 7 C 0.07 0.83 11.66 -17.47 -0.20 0.63 16 8 C -0.08 -1.06 6.89 -82.14 -0.57 -1.62 16 9 C 0.61 8.88 7.82 -12.82 -0.10 8.78 16 10 O -0.53 -9.20 17.21 5.20 0.09 -9.11 16 11 N -0.62 -8.26 3.34 -172.24 -0.58 -8.84 16 12 C 0.11 1.47 6.83 -2.15 -0.01 1.46 16 13 C -0.11 -1.56 5.99 -25.18 -0.15 -1.71 16 14 C -0.08 -1.19 0.61 -154.08 -0.09 -1.29 16 15 C -0.13 -2.08 5.85 -25.63 -0.15 -2.23 16 16 C 0.18 3.95 5.35 -2.83 -0.02 3.94 16 17 N -0.60 -14.07 3.41 -170.56 -0.58 -14.65 16 18 C -0.23 -6.04 10.28 -15.06 -0.15 -6.19 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -25.81 10.30 55.49 0.57 -25.24 16 22 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.15 2.77 6.10 -3.25 -0.02 2.75 16 27 C 0.11 1.26 4.40 -3.70 -0.02 1.25 16 28 N -0.55 -5.69 5.66 -7.02 -0.04 -5.73 16 29 H 0.42 3.67 5.18 -40.82 -0.21 3.46 16 30 H 0.09 0.92 5.49 -51.93 -0.29 0.63 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 42 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 43 H 0.10 1.57 8.00 -51.93 -0.42 1.15 16 44 H 0.06 0.94 7.80 -51.93 -0.40 0.53 16 45 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 47 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 48 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.02 0.34 7.79 -51.93 -0.40 -0.07 16 50 H 0.04 0.78 7.96 -51.93 -0.41 0.37 16 51 H 0.07 0.69 6.68 -51.93 -0.35 0.34 16 52 H 0.07 0.77 6.91 -51.93 -0.36 0.42 16 LS Contribution 402.42 15.07 6.06 6.06 Total: -1.00 -31.06 402.42 -10.68 -41.74 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.63 Total: 1.26 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.47 Total: 4.00 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.72 Total: -60.28 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.06 -10.68 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041287051.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.533 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds