Wall clock time and date at job start Wed Apr 1 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 C 1.52998 * 109.46826 * 120.00063 * 2 1 3 5 5 C 1.50694 * 109.47441 * 64.99917 * 4 2 1 6 6 N 1.30859 * 125.41878 * 305.02826 * 5 4 2 7 7 C 1.33322 * 109.68599 * 179.97438 * 6 5 4 8 8 C 1.36666 * 107.78531 * 359.97438 * 7 6 5 9 9 C 1.46767 * 126.84672 * 180.02562 * 8 7 6 10 10 O 1.21683 * 119.99759 * 354.45512 * 9 8 7 11 11 N 1.34772 * 120.00103 * 174.45151 * 9 8 7 12 12 C 1.47578 * 125.67519 * 184.38107 * 11 9 8 13 13 C 1.55447 * 104.91151 * 156.09354 * 12 11 9 14 14 C 1.53493 * 101.29402 * 35.63715 * 13 12 11 15 15 C 1.53474 * 111.81562 * 204.13517 * 14 13 12 16 16 C 1.54634 * 102.73949 * 272.83642 * 15 14 13 17 17 N 1.47154 * 107.34163 * 339.34293 * 16 15 14 18 18 C 1.36946 * 125.59594 * 179.06311 * 17 16 15 19 19 H 1.07996 * 119.99674 * 179.97438 * 18 17 16 20 20 C 1.38807 * 119.99933 * 359.97438 * 18 17 16 21 21 N 1.31623 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99760 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47272 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47086 * 119.99750 * 22 20 18 25 25 H 1.48500 * 109.47022 * 239.99487 * 22 20 18 26 26 C 1.47747 * 108.80305 * 359.08052 * 17 16 15 27 27 C 1.47444 * 125.67848 * 4.69345 * 11 9 8 28 28 N 1.34499 * 125.41642 * 124.71764 * 5 4 2 29 29 H 0.96998 * 126.47277 * 359.97438 * 28 5 4 30 30 H 1.08995 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47482 * 299.99960 * 1 2 3 32 32 H 1.08998 * 109.47021 * 60.00231 * 1 2 3 33 33 H 1.08998 * 109.47247 * 239.99548 * 2 1 3 34 34 H 1.09004 * 109.47012 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47052 * 299.99750 * 3 2 1 36 36 H 1.09000 * 109.46978 * 59.99730 * 3 2 1 37 37 H 1.09006 * 109.46914 * 304.99854 * 4 2 1 38 38 H 1.09001 * 109.47255 * 185.00526 * 4 2 1 39 39 H 1.08001 * 126.11035 * 180.02562 * 7 6 5 40 40 H 1.08999 * 110.32846 * 275.07980 * 12 11 9 41 41 H 1.09003 * 110.32918 * 37.30161 * 12 11 9 42 42 H 1.08999 * 111.23689 * 277.57266 * 13 12 11 43 43 H 1.08997 * 110.96426 * 153.57758 * 13 12 11 44 44 H 1.09001 * 110.75817 * 31.14808 * 15 14 13 45 45 H 1.08997 * 110.75960 * 154.34213 * 15 14 13 46 46 H 1.09004 * 109.87093 * 98.77926 * 16 15 14 47 47 H 1.09000 * 109.87141 * 219.75672 * 16 15 14 48 48 H 0.97002 * 119.99853 * 180.02562 * 21 20 18 49 49 H 1.08999 * 110.40097 * 263.54670 * 26 17 16 50 50 H 1.09001 * 110.39432 * 141.14624 * 26 17 16 51 51 H 1.08997 * 109.99495 * 301.53741 * 27 11 9 52 52 H 1.09005 * 109.99728 * 62.82226 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 7 0.4208 -2.6188 1.0328 7 6 0.4271 -3.9519 1.0235 8 6 1.7203 -4.3644 1.1817 9 6 2.2026 -5.7497 1.2309 10 8 1.4077 -6.6711 1.2269 11 7 3.5257 -6.0013 1.2804 12 6 4.1496 -7.3382 1.2414 13 6 5.5901 -7.0920 0.7117 14 6 5.9193 -5.7375 1.3544 15 6 6.9967 -4.9795 0.5669 16 6 8.3100 -5.5227 1.1763 17 7 7.9817 -6.0849 2.4960 18 6 8.8689 -6.6825 3.3510 19 1 8.5284 -7.0650 4.3018 20 6 10.2058 -6.7967 2.9955 21 7 10.6207 -6.3310 1.8364 22 14 11.4162 -7.6113 4.1621 23 1 10.7035 -8.0472 5.3897 24 1 12.0252 -8.7919 3.4984 25 1 12.4819 -6.6430 4.5251 26 6 6.5376 -5.8990 2.7468 27 6 4.5904 -4.9872 1.3890 28 7 2.4840 -3.2174 1.2812 29 1 3.4461 -3.1734 1.3967 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6053 -0.2617 2.1370 38 1 3.1262 -0.6443 1.2953 39 1 -0.4357 -4.5917 0.9103 40 1 4.1799 -7.7712 2.2412 41 1 3.6030 -7.9915 0.5613 42 1 5.6044 -7.0230 -0.3760 43 1 6.2720 -7.8671 1.0615 44 1 6.9370 -5.2159 -0.4954 45 1 6.9085 -3.9050 0.7276 46 1 8.7222 -6.3011 0.5341 47 1 9.0309 -4.7124 1.2852 48 1 11.5549 -6.4111 1.5879 49 1 6.3679 -5.0030 3.3440 50 1 6.1232 -6.7742 3.2473 51 1 4.5318 -4.2939 0.5500 52 1 4.4930 -4.4436 2.3288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041287051.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:51 Heat of formation + Delta-G solvation = 29.750306 kcal Electronic energy + Delta-G solvation = -31194.738770 eV Core-core repulsion = 27194.900722 eV Total energy + Delta-G solvation = -3999.838048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.39698 -41.43601 -39.71722 -37.26373 -37.19257 -34.59944 -33.89632 -32.26650 -31.56329 -30.80199 -29.89695 -28.05568 -27.80922 -27.38919 -25.58568 -24.57497 -22.85756 -22.26344 -22.11285 -21.57353 -20.54568 -20.16623 -18.83248 -18.82158 -17.36619 -17.30790 -16.78159 -16.73966 -16.24503 -16.04117 -15.85095 -15.65597 -15.17175 -15.12216 -14.69758 -14.61805 -14.24047 -14.06941 -13.90302 -13.88370 -13.84798 -13.42037 -13.07538 -13.00988 -12.96901 -12.87060 -12.69595 -12.65370 -12.45895 -12.19558 -11.99851 -11.81605 -11.69230 -11.67610 -11.54336 -11.51680 -11.39592 -11.28199 -11.19246 -10.81794 -10.69373 -9.98900 -9.48744 -8.87844 -7.85075 -5.19135 0.19284 1.45548 1.46662 1.55929 1.61365 1.71160 1.95554 2.21396 2.48665 3.19240 3.27065 3.37052 3.40850 3.53256 3.65240 3.81481 3.91329 4.02583 4.11207 4.14053 4.18080 4.21173 4.27626 4.38226 4.39949 4.57800 4.63823 4.66688 4.69470 4.75639 4.80128 4.82111 4.86969 4.93623 4.96298 5.01292 5.03265 5.13823 5.17438 5.19598 5.23646 5.29157 5.37578 5.45776 5.47136 5.55217 5.70067 5.77992 5.81193 6.19949 6.21286 6.26543 6.82516 6.91020 7.12169 7.78689 8.41487 9.24850 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002553 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.589009 B =10966.299153 C =12345.403542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.038 4.038 5 C 0.251 3.749 6 N -0.505 5.505 7 C 0.062 3.938 8 C -0.098 4.098 9 C 0.609 3.391 10 O -0.566 6.566 11 N -0.613 5.613 12 C 0.113 3.887 13 C -0.105 4.105 14 C -0.070 4.070 15 C -0.115 4.115 16 C 0.186 3.814 17 N -0.623 5.623 18 C -0.236 4.236 19 H 0.079 0.921 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.971 3.029 23 H -0.268 1.268 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.147 3.853 27 C 0.112 3.888 28 N -0.545 5.545 29 H 0.432 0.568 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.185 0.815 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.011 0.989 47 H 0.007 0.993 48 H 0.246 0.754 49 H 0.030 0.970 50 H 0.037 0.963 51 H 0.094 0.906 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.215 13.180 -4.657 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.102 4.102 3 C -0.202 4.202 4 C -0.077 4.077 5 C -0.013 4.013 6 N -0.225 5.225 7 C -0.093 4.093 8 C -0.214 4.214 9 C 0.400 3.600 10 O -0.446 6.446 11 N -0.346 5.346 12 C -0.009 4.009 13 C -0.143 4.143 14 C -0.071 4.071 15 C -0.153 4.153 16 C 0.061 3.939 17 N -0.349 5.349 18 C -0.366 4.366 19 H 0.097 0.903 20 C -0.256 4.256 21 N -0.597 5.597 22 Si 0.800 3.200 23 H -0.193 1.193 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.022 3.978 27 C -0.011 4.011 28 N -0.154 5.154 29 H 0.277 0.723 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.202 0.798 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.029 0.971 47 H 0.025 0.975 48 H 0.055 0.945 49 H 0.048 0.952 50 H 0.055 0.945 51 H 0.112 0.888 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.172 13.096 -4.708 22.889 hybrid contribution 2.275 -1.371 0.754 2.761 sum -15.898 11.725 -3.954 20.146 Atomic orbital electron populations 1.22044 0.94893 1.03519 1.01029 1.20955 0.96564 0.96453 0.96217 1.21827 1.01425 0.94469 1.02497 1.20492 1.02974 0.83069 1.01119 1.24023 0.85263 0.92737 0.99267 1.70183 1.20852 1.09566 1.21869 1.22859 0.95132 0.91682 0.99596 1.20800 0.93607 0.86369 1.20648 1.16665 0.80592 0.86664 0.76109 1.90823 1.54913 1.45591 1.53271 1.48562 1.04580 1.09415 1.72045 1.22379 0.92906 0.84031 1.01579 1.22524 0.94233 0.96607 1.00924 1.21367 0.93077 0.96050 0.96608 1.22603 0.93384 0.99937 0.99394 1.20958 0.92776 0.94831 0.85289 1.44805 1.03784 1.68606 1.17703 1.19415 0.89097 1.29864 0.98189 0.90345 1.25533 0.98739 1.02453 0.98879 1.70166 1.14784 1.52365 1.22416 0.85115 0.79037 0.77377 0.78449 1.19276 1.22141 1.22036 1.21488 0.83914 0.98238 0.94157 1.22077 0.85240 0.91283 1.02484 1.43793 1.11755 1.05276 1.54551 0.72294 0.90981 0.92799 0.93362 0.91951 0.91779 0.92334 0.91853 0.87583 0.87566 0.79778 0.91453 0.90047 0.89315 0.90818 0.89642 0.89612 0.97115 0.97467 0.94493 0.95239 0.94451 0.88814 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.92 71.98 0.64 -1.62 16 2 C -0.08 -0.95 2.91 -10.79 -0.03 -0.98 16 3 C -0.14 -1.23 9.19 71.98 0.66 -0.57 16 4 C -0.04 -0.40 5.32 29.85 0.16 -0.25 16 5 C 0.25 4.35 7.36 138.19 1.02 5.37 16 6 N -0.50 -11.05 8.51 -187.39 -1.59 -12.64 16 7 C 0.06 1.46 11.66 84.10 0.98 2.44 16 8 C -0.10 -2.30 6.89 40.01 0.28 -2.03 16 9 C 0.61 16.83 7.82 86.47 0.68 17.50 16 10 O -0.57 -19.36 17.21 -4.30 -0.07 -19.44 16 11 N -0.61 -15.08 3.34 -817.08 -2.73 -17.81 16 12 C 0.11 2.89 6.83 87.01 0.59 3.49 16 13 C -0.10 -2.81 5.99 31.60 0.19 -2.62 16 14 C -0.07 -1.88 0.61 -51.90 -0.03 -1.92 16 15 C -0.11 -3.35 5.85 31.31 0.18 -3.16 16 16 C 0.19 8.26 5.35 86.81 0.46 8.73 16 17 N -0.62 -29.20 3.41 -693.54 -2.36 -31.57 16 18 C -0.24 -12.59 10.28 84.03 0.86 -11.73 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 21 N -0.95 -54.75 10.30 21.65 0.22 -54.53 16 22 Si 0.97 44.55 29.55 68.60 2.03 46.57 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 26 C 0.15 5.21 6.10 86.21 0.53 5.74 16 27 C 0.11 2.29 4.40 86.08 0.38 2.67 16 28 N -0.54 -9.47 5.66 -176.11 -1.00 -10.47 16 29 H 0.43 5.66 5.18 -92.71 -0.48 5.18 16 30 H 0.07 1.36 5.49 -2.39 -0.01 1.34 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.19 4.07 8.06 -2.91 -0.02 4.04 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 42 H 0.09 2.14 7.85 -2.39 -0.02 2.13 16 43 H 0.07 2.37 8.00 -2.39 -0.02 2.35 16 44 H 0.09 2.20 7.80 -2.39 -0.02 2.18 16 45 H 0.09 2.08 8.07 -2.39 -0.02 2.06 16 46 H 0.01 0.54 7.38 -2.39 -0.02 0.52 16 47 H 0.01 0.36 7.50 -2.39 -0.02 0.34 16 48 H 0.25 13.89 8.31 -92.71 -0.77 13.11 16 49 H 0.03 1.01 7.79 -2.39 -0.02 0.99 16 50 H 0.04 1.36 7.96 -2.39 -0.02 1.34 16 51 H 0.09 1.48 6.68 -2.39 -0.02 1.47 16 52 H 0.08 1.54 6.91 -2.38 -0.02 1.52 16 Total: -1.00 -69.75 402.42 2.94 -66.81 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.43 Total: 14.98 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 8.01 Total: 18.08 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -7.46 Total: -127.01 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.07 Total: -19.44 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.75 2.94 -66.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041287051.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.564 kcal (2) G-P(sol) polarization free energy of solvation -69.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds