Wall clock time and date at job start Wed Apr 1 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47394 * 2 1 4 4 C 1.53001 * 109.47080 * 239.99669 * 2 1 3 5 5 C 1.50709 * 109.46686 * 120.00110 * 2 1 3 6 6 C 1.39678 * 126.06738 * 75.26613 * 5 2 1 7 7 C 1.38403 * 105.35133 * 180.10602 * 6 5 2 8 8 C 1.47168 * 126.87966 * 179.91700 * 7 6 5 9 9 O 1.21633 * 119.99897 * 4.86750 * 8 7 6 10 10 N 1.34775 * 120.00087 * 184.58885 * 8 7 6 11 11 C 1.47574 * 125.67759 * 174.80994 * 10 8 7 12 12 C 1.55443 * 104.91338 * 156.09241 * 11 10 8 13 13 C 1.53499 * 101.29249 * 35.63833 * 12 11 10 14 14 C 1.53470 * 111.81969 * 204.12782 * 13 12 11 15 15 C 1.54621 * 102.74592 * 272.84319 * 14 13 12 16 16 N 1.47161 * 107.34431 * 339.33630 * 15 14 13 17 17 C 1.36933 * 125.60219 * 179.06958 * 16 15 14 18 18 H 1.07995 * 120.00373 * 179.97438 * 17 16 15 19 19 C 1.38819 * 120.00149 * 359.96836 * 17 16 15 20 20 N 1.31626 * 119.99720 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00217 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47008 * 90.00265 * 21 19 17 23 23 H 1.48499 * 109.47140 * 210.00046 * 21 19 17 24 24 H 1.48502 * 109.47105 * 330.00518 * 21 19 17 25 25 C 1.47750 * 108.79692 * 359.08566 * 16 15 14 26 26 C 1.47454 * 125.67522 * 355.12697 * 10 8 7 27 27 N 1.36593 * 106.23754 * 359.64964 * 7 6 5 28 28 H 0.97001 * 125.19491 * 180.20786 * 27 7 6 29 29 N 1.28445 * 109.61833 * 0.23098 * 27 7 6 30 30 H 1.09006 * 109.47309 * 299.99975 * 1 2 3 31 31 H 1.09007 * 109.47391 * 60.00020 * 1 2 3 32 32 H 1.09004 * 109.47650 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47264 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47454 * 299.99957 * 3 2 1 35 35 H 1.09000 * 109.47146 * 60.00087 * 3 2 1 36 36 H 1.09004 * 109.46986 * 300.00538 * 4 2 1 37 37 H 1.09007 * 109.46755 * 59.99922 * 4 2 1 38 38 H 1.08992 * 109.47309 * 180.02562 * 4 2 1 39 39 H 1.07994 * 127.32457 * 0.02562 * 6 5 2 40 40 H 1.09006 * 110.33456 * 275.08432 * 11 10 8 41 41 H 1.09006 * 110.33094 * 37.30335 * 11 10 8 42 42 H 1.08994 * 111.24483 * 277.58018 * 12 11 10 43 43 H 1.08997 * 110.96429 * 153.57626 * 12 11 10 44 44 H 1.08999 * 110.75157 * 31.15501 * 14 13 12 45 45 H 1.08994 * 110.75590 * 154.33878 * 14 13 12 46 46 H 1.08997 * 109.87818 * 98.77593 * 15 14 13 47 47 H 1.09006 * 109.87286 * 219.75959 * 15 14 13 48 48 H 0.96992 * 120.00013 * 180.02562 * 20 19 17 49 49 H 1.09003 * 110.39834 * 263.54595 * 25 16 15 50 50 H 1.08998 * 110.39515 * 141.14599 * 25 16 15 51 51 H 1.09001 * 109.98944 * 301.52820 * 26 10 8 52 52 H 1.09002 * 109.99498 * 62.82048 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7105 1.2305 6 6 2.0356 -2.0916 1.4389 7 6 2.5821 -2.2710 2.6977 8 6 2.8046 -3.5506 3.3899 9 8 2.5790 -4.5993 2.8166 10 7 3.2637 -3.5604 4.6570 11 6 3.4286 -4.7580 5.5034 12 6 4.5076 -4.3626 6.5501 13 6 4.1725 -2.8828 6.7829 14 6 5.3877 -2.0961 7.2925 15 6 5.3059 -2.2959 8.8235 16 7 3.9201 -2.6744 9.1431 17 6 3.4394 -2.9582 10.3935 18 1 2.4017 -3.2268 10.5250 19 6 4.2860 -2.9009 11.4921 20 7 5.5507 -2.5731 11.3320 21 14 3.6305 -3.2887 13.1977 22 1 3.7835 -4.7408 13.4685 23 1 4.3930 -2.5136 14.2092 24 1 2.1938 -2.9202 13.2715 25 6 3.1328 -2.6983 7.8931 26 6 3.6787 -2.3756 5.4305 27 7 2.8792 -1.0229 3.1665 28 1 3.2793 -0.8302 4.0289 29 7 2.5476 -0.1433 2.2912 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6765 -1.7490 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1299 -0.7217 -1.2490 39 1 1.6849 -2.8568 0.7622 40 1 2.4892 -5.0041 5.9986 41 1 3.7738 -5.6006 4.9042 42 1 5.5125 -4.4770 6.1439 43 1 4.3907 -4.9392 7.4676 44 1 6.3128 -2.5155 6.8971 45 1 5.3016 -1.0411 7.0326 46 1 5.9869 -3.0897 9.1306 47 1 5.5654 -1.3678 9.3328 48 1 6.1424 -2.5334 12.0995 49 1 2.5998 -1.7566 7.7617 50 1 2.4330 -3.5339 7.9008 51 1 4.4832 -1.8547 4.9113 52 1 2.8302 -1.7057 5.5700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041434762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:48 Heat of formation + Delta-G solvation = 63.407057 kcal Electronic energy + Delta-G solvation = -31177.112190 eV Core-core repulsion = 27178.733608 eV Total energy + Delta-G solvation = -3998.378582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.82862 -40.33082 -38.51556 -37.17689 -35.81592 -32.84592 -31.58586 -31.22931 -30.17088 -29.44892 -28.50126 -27.51196 -27.46990 -25.86064 -24.57556 -23.29294 -22.94107 -21.79941 -20.62900 -20.38811 -19.23086 -18.77761 -17.85177 -16.98688 -16.36137 -16.05650 -15.81337 -15.37798 -14.96065 -14.79691 -14.49276 -14.22839 -14.15897 -13.95925 -13.88195 -13.65706 -13.40570 -12.82972 -12.65263 -12.59217 -12.52615 -12.37903 -12.08658 -11.88465 -11.65379 -11.58509 -11.47291 -11.32670 -11.25100 -11.24026 -10.98740 -10.83961 -10.74669 -10.33559 -10.32002 -10.14622 -10.04494 -9.88913 -9.75253 -9.34458 -9.31203 -8.80383 -8.68379 -6.93840 -5.80024 -3.13978 1.10021 2.36944 2.55056 2.79065 3.06389 3.34692 3.40372 3.41881 4.05924 4.25234 4.37443 4.49483 4.52518 4.71366 4.72426 4.75925 4.93527 5.08684 5.11245 5.18099 5.31439 5.34758 5.38532 5.40944 5.43172 5.50376 5.54010 5.56105 5.62178 5.67072 5.67925 5.74365 5.80485 5.82627 5.86564 5.92466 6.07205 6.09158 6.13182 6.15092 6.26600 6.30033 6.34862 6.44746 6.53594 6.62956 6.76830 7.25400 7.46289 7.49952 7.73351 7.76916 7.92938 8.15593 9.12863 9.72558 10.37268 11.31538 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.002273 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.773152 B =12313.517059 C =12839.514536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.135 4.135 4 C -0.139 4.139 5 C 0.036 3.964 6 C -0.150 4.150 7 C -0.031 4.031 8 C 0.604 3.396 9 O -0.526 6.526 10 N -0.613 5.613 11 C 0.108 3.892 12 C -0.110 4.110 13 C -0.080 4.080 14 C -0.132 4.132 15 C 0.180 3.820 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.150 3.850 26 C 0.100 3.900 27 N -0.381 5.381 28 H 0.445 0.555 29 N -0.266 5.266 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.162 0.838 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.253 0.747 49 H 0.019 0.981 50 H 0.042 0.958 51 H 0.070 0.930 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 3.988 -22.054 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.122 4.122 6 C -0.179 4.179 7 C -0.160 4.160 8 C 0.392 3.608 9 O -0.401 6.401 10 N -0.347 5.347 11 C -0.013 4.013 12 C -0.148 4.148 13 C -0.081 4.081 14 C -0.171 4.171 15 C 0.055 3.945 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.024 3.976 26 C -0.024 4.024 27 N -0.101 5.101 28 H 0.295 0.705 29 N -0.098 5.098 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.180 0.820 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.060 0.940 51 H 0.088 0.912 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.544 4.414 -21.724 22.629 hybrid contribution -0.212 -0.759 1.272 1.496 sum -4.756 3.655 -20.452 21.313 Atomic orbital electron populations 1.21876 0.93310 1.02338 1.02079 1.18905 0.95409 0.94840 0.89321 1.21770 1.01317 0.94258 1.01924 1.21884 1.01400 1.00486 0.95927 1.21907 1.03179 0.91544 0.95539 1.21941 1.04348 0.96528 0.95066 1.21684 1.10192 0.86546 0.97549 1.16606 0.77483 0.86928 0.79817 1.90832 1.52407 1.31695 1.65189 1.48590 1.63909 1.10032 1.12166 1.22495 0.99756 0.87437 0.91641 1.22613 0.97791 0.95338 0.99069 1.21543 0.98535 0.95852 0.92210 1.22751 0.95540 0.98448 1.00373 1.21207 0.86591 0.99977 0.86719 1.44535 1.05699 1.81160 1.01503 1.19034 0.94627 1.39930 0.82230 0.90446 1.24798 0.95823 1.01688 0.97987 1.69948 1.03720 1.54094 1.29110 0.86122 0.77851 0.77825 0.83974 1.21553 1.21658 1.20697 1.21324 0.92447 0.98074 0.85776 1.22145 0.98834 0.88320 0.93077 1.44358 1.45913 1.02901 1.16968 0.70459 1.73085 1.16424 1.20103 1.00234 0.92427 0.91916 0.92213 0.92479 0.92457 0.91951 0.92082 0.91889 0.92380 0.82048 0.90780 0.90126 0.90696 0.88328 0.91613 0.92179 0.93335 0.93785 0.93686 0.96298 0.93981 0.91235 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.46 37.16 0.31 -0.72 16 2 C 0.02 0.14 0.97 -155.66 -0.15 -0.01 16 3 C -0.14 -1.09 8.04 37.15 0.30 -0.79 16 4 C -0.14 -0.98 8.20 37.16 0.30 -0.68 16 5 C 0.04 0.40 5.65 -82.47 -0.47 -0.06 16 6 C -0.15 -1.78 10.13 -38.98 -0.39 -2.17 16 7 C -0.03 -0.40 6.98 -82.06 -0.57 -0.97 16 8 C 0.60 8.71 7.83 -12.64 -0.10 8.61 16 9 O -0.53 -8.98 17.16 5.25 0.09 -8.89 16 10 N -0.61 -8.12 3.34 -172.09 -0.58 -8.69 16 11 C 0.11 1.43 6.87 -2.16 -0.01 1.41 16 12 C -0.11 -1.54 5.99 -25.18 -0.15 -1.69 16 13 C -0.08 -1.18 0.61 -154.07 -0.09 -1.27 16 14 C -0.13 -2.12 5.85 -25.64 -0.15 -2.27 16 15 C 0.18 3.98 5.35 -2.83 -0.02 3.97 16 16 N -0.60 -14.15 3.41 -170.56 -0.58 -14.73 16 17 C -0.23 -6.09 10.28 -15.06 -0.15 -6.24 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.18 5.49 -17.42 -0.10 -0.27 16 20 N -0.92 -25.96 10.30 55.49 0.57 -25.39 16 21 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.15 2.77 6.10 -3.24 -0.02 2.75 16 26 C 0.10 1.20 4.39 -3.70 -0.02 1.19 16 27 N -0.38 -4.43 6.52 33.48 0.22 -4.21 16 28 H 0.44 4.47 5.01 -190.45 -0.95 3.52 16 29 N -0.27 -3.21 11.48 33.64 0.39 -2.83 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.06 0.42 7.59 -51.93 -0.39 0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.16 1.73 7.78 -52.49 -0.41 1.32 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.04 7.99 -51.93 -0.42 0.63 16 42 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 43 H 0.10 1.57 8.00 -51.93 -0.42 1.15 16 44 H 0.07 0.96 7.80 -51.93 -0.40 0.55 16 45 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 46 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 47 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.02 0.35 7.79 -51.93 -0.40 -0.05 16 50 H 0.04 0.78 7.96 -51.93 -0.41 0.36 16 51 H 0.07 0.73 6.94 -51.93 -0.36 0.37 16 52 H 0.07 0.81 6.70 -51.93 -0.35 0.46 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -30.90 403.96 -9.77 -40.66 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -9.47 Total: 0.78 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.48 Total: 0.78 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.02 Total: -55.85 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.90 -9.77 -40.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041434762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.072 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds