Wall clock time and date at job start Wed Apr 1 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47394 * 2 1 4 4 C 1.53001 * 109.47080 * 239.99669 * 2 1 3 5 5 C 1.50709 * 109.46686 * 120.00110 * 2 1 3 6 6 C 1.39678 * 126.06738 * 75.26613 * 5 2 1 7 7 C 1.38403 * 105.35133 * 180.10602 * 6 5 2 8 8 C 1.47168 * 126.87966 * 179.91700 * 7 6 5 9 9 O 1.21633 * 119.99897 * 4.86750 * 8 7 6 10 10 N 1.34775 * 120.00087 * 184.58885 * 8 7 6 11 11 C 1.47574 * 125.67759 * 174.80994 * 10 8 7 12 12 C 1.55443 * 104.91338 * 156.09241 * 11 10 8 13 13 C 1.53499 * 101.29249 * 35.63833 * 12 11 10 14 14 C 1.53470 * 111.81969 * 204.12782 * 13 12 11 15 15 C 1.54621 * 102.74592 * 272.84319 * 14 13 12 16 16 N 1.47161 * 107.34431 * 339.33630 * 15 14 13 17 17 C 1.36933 * 125.60219 * 179.06958 * 16 15 14 18 18 H 1.07995 * 120.00373 * 179.97438 * 17 16 15 19 19 C 1.38819 * 120.00149 * 359.96836 * 17 16 15 20 20 N 1.31626 * 119.99720 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00217 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47008 * 90.00265 * 21 19 17 23 23 H 1.48499 * 109.47140 * 210.00046 * 21 19 17 24 24 H 1.48502 * 109.47105 * 330.00518 * 21 19 17 25 25 C 1.47750 * 108.79692 * 359.08566 * 16 15 14 26 26 C 1.47454 * 125.67522 * 355.12697 * 10 8 7 27 27 N 1.36593 * 106.23754 * 359.64964 * 7 6 5 28 28 H 0.97001 * 125.19491 * 180.20786 * 27 7 6 29 29 N 1.28445 * 109.61833 * 0.23098 * 27 7 6 30 30 H 1.09006 * 109.47309 * 299.99975 * 1 2 3 31 31 H 1.09007 * 109.47391 * 60.00020 * 1 2 3 32 32 H 1.09004 * 109.47650 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47264 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47454 * 299.99957 * 3 2 1 35 35 H 1.09000 * 109.47146 * 60.00087 * 3 2 1 36 36 H 1.09004 * 109.46986 * 300.00538 * 4 2 1 37 37 H 1.09007 * 109.46755 * 59.99922 * 4 2 1 38 38 H 1.08992 * 109.47309 * 180.02562 * 4 2 1 39 39 H 1.07994 * 127.32457 * 0.02562 * 6 5 2 40 40 H 1.09006 * 110.33456 * 275.08432 * 11 10 8 41 41 H 1.09006 * 110.33094 * 37.30335 * 11 10 8 42 42 H 1.08994 * 111.24483 * 277.58018 * 12 11 10 43 43 H 1.08997 * 110.96429 * 153.57626 * 12 11 10 44 44 H 1.08999 * 110.75157 * 31.15501 * 14 13 12 45 45 H 1.08994 * 110.75590 * 154.33878 * 14 13 12 46 46 H 1.08997 * 109.87818 * 98.77593 * 15 14 13 47 47 H 1.09006 * 109.87286 * 219.75959 * 15 14 13 48 48 H 0.96992 * 120.00013 * 180.02562 * 20 19 17 49 49 H 1.09003 * 110.39834 * 263.54595 * 25 16 15 50 50 H 1.08998 * 110.39515 * 141.14599 * 25 16 15 51 51 H 1.09001 * 109.98944 * 301.52820 * 26 10 8 52 52 H 1.09002 * 109.99498 * 62.82048 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7105 1.2305 6 6 2.0356 -2.0916 1.4389 7 6 2.5821 -2.2710 2.6977 8 6 2.8046 -3.5506 3.3899 9 8 2.5790 -4.5993 2.8166 10 7 3.2637 -3.5604 4.6570 11 6 3.4286 -4.7580 5.5034 12 6 4.5076 -4.3626 6.5501 13 6 4.1725 -2.8828 6.7829 14 6 5.3877 -2.0961 7.2925 15 6 5.3059 -2.2959 8.8235 16 7 3.9201 -2.6744 9.1431 17 6 3.4394 -2.9582 10.3935 18 1 2.4017 -3.2268 10.5250 19 6 4.2860 -2.9009 11.4921 20 7 5.5507 -2.5731 11.3320 21 14 3.6305 -3.2887 13.1977 22 1 3.7835 -4.7408 13.4685 23 1 4.3930 -2.5136 14.2092 24 1 2.1938 -2.9202 13.2715 25 6 3.1328 -2.6983 7.8931 26 6 3.6787 -2.3756 5.4305 27 7 2.8792 -1.0229 3.1665 28 1 3.2793 -0.8302 4.0289 29 7 2.5476 -0.1433 2.2912 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6765 -1.7490 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1299 -0.7217 -1.2490 39 1 1.6849 -2.8568 0.7622 40 1 2.4892 -5.0041 5.9986 41 1 3.7738 -5.6006 4.9042 42 1 5.5125 -4.4770 6.1439 43 1 4.3907 -4.9392 7.4676 44 1 6.3128 -2.5155 6.8971 45 1 5.3016 -1.0411 7.0326 46 1 5.9869 -3.0897 9.1306 47 1 5.5654 -1.3678 9.3328 48 1 6.1424 -2.5334 12.0995 49 1 2.5998 -1.7566 7.7617 50 1 2.4330 -3.5339 7.9008 51 1 4.4832 -1.8547 4.9113 52 1 2.8302 -1.7057 5.5700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041434762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:47 Heat of formation + Delta-G solvation = 45.620141 kcal Electronic energy + Delta-G solvation = -31177.883488 eV Core-core repulsion = 27178.733608 eV Total energy + Delta-G solvation = -3999.149880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.73081 -41.51241 -39.78661 -37.84770 -37.26111 -34.54419 -32.74250 -32.12731 -31.69689 -30.64820 -29.87906 -28.11788 -28.03746 -27.48380 -25.89635 -24.68615 -23.75768 -22.82505 -22.12253 -21.60009 -20.36791 -19.76618 -18.87559 -18.75809 -17.44989 -17.09627 -16.80205 -16.74895 -16.36204 -15.96081 -15.73040 -15.57028 -15.22598 -14.85743 -14.73338 -14.64640 -14.48734 -14.08669 -13.90847 -13.89092 -13.85060 -13.07594 -13.06383 -12.99205 -12.92414 -12.87558 -12.64056 -12.47666 -12.46963 -12.34359 -12.04192 -11.98847 -11.85989 -11.81189 -11.66520 -11.52915 -11.49098 -11.35919 -11.22320 -10.68913 -10.31628 -10.16664 -9.85349 -8.88464 -7.85125 -5.19377 0.11126 1.46102 1.46449 1.49783 1.54383 1.55238 1.85395 2.02788 2.48642 3.09715 3.25834 3.36106 3.41774 3.51972 3.62350 3.80704 3.82067 4.11354 4.15329 4.15836 4.20009 4.22689 4.25576 4.35048 4.45314 4.56054 4.62250 4.67563 4.68723 4.78716 4.83426 4.87566 4.89481 4.98506 5.00806 5.02605 5.10501 5.11155 5.13180 5.16462 5.19890 5.28631 5.29098 5.46524 5.50192 5.50504 5.52375 5.69150 5.80443 5.91962 6.18078 6.20720 6.75232 6.96375 7.11571 7.78235 8.41325 9.24719 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.002273 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.773152 B =12313.517059 C =12839.514536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.014 3.986 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.036 3.964 6 C -0.152 4.152 7 C -0.044 4.044 8 C 0.607 3.393 9 O -0.558 6.558 10 N -0.610 5.610 11 C 0.112 3.888 12 C -0.105 4.105 13 C -0.068 4.068 14 C -0.117 4.117 15 C 0.186 3.814 16 N -0.622 5.622 17 C -0.238 4.238 18 H 0.080 0.920 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.972 3.028 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.271 1.271 25 C 0.146 3.854 26 C 0.106 3.894 27 N -0.375 5.375 28 H 0.450 0.550 29 N -0.276 5.276 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.170 0.830 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.012 0.988 47 H 0.006 0.994 48 H 0.246 0.754 49 H 0.028 0.972 50 H 0.041 0.959 51 H 0.097 0.903 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 4.725 -24.351 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 C -0.190 4.190 4 C -0.195 4.195 5 C -0.121 4.121 6 C -0.182 4.182 7 C -0.172 4.172 8 C 0.395 3.605 9 O -0.435 6.435 10 N -0.343 5.343 11 C -0.009 4.009 12 C -0.143 4.143 13 C -0.070 4.070 14 C -0.155 4.155 15 C 0.061 3.939 16 N -0.349 5.349 17 C -0.367 4.367 18 H 0.097 0.903 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.801 3.199 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.196 1.196 25 C 0.021 3.979 26 C -0.017 4.017 27 N -0.097 5.097 28 H 0.302 0.698 29 N -0.109 5.109 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.187 0.813 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.031 0.969 47 H 0.024 0.976 48 H 0.055 0.945 49 H 0.045 0.955 50 H 0.059 0.941 51 H 0.114 0.886 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.439 5.166 -24.032 25.176 hybrid contribution 0.011 -0.973 1.965 2.193 sum -5.428 4.194 -22.067 23.109 Atomic orbital electron populations 1.21866 0.92483 1.02465 1.02548 1.19074 0.96030 0.94931 0.88739 1.21746 1.00768 0.94081 1.02363 1.21879 1.00965 1.00690 0.95931 1.22366 1.02356 0.91407 0.96011 1.22171 1.03883 0.97181 0.94926 1.21545 1.11352 0.86338 0.98014 1.16728 0.76932 0.87022 0.79782 1.90815 1.53934 1.32883 1.65918 1.48560 1.63505 1.10294 1.11945 1.22432 0.99360 0.87744 0.91400 1.22530 0.98908 0.94448 0.98378 1.21346 0.96680 0.96452 0.92472 1.22614 0.97098 1.00340 0.95460 1.20956 0.85442 0.96684 0.90778 1.44795 1.06905 1.80909 1.02274 1.19389 0.94779 1.38706 0.83829 0.90264 1.25558 0.96210 1.02560 1.01359 1.70161 1.04668 1.55600 1.29351 0.85166 0.77580 0.77296 0.79823 1.21413 1.22275 1.19611 1.21501 0.93069 0.98246 0.85062 1.22123 1.00244 0.88009 0.91347 1.44322 1.45849 1.02339 1.17182 0.69794 1.73097 1.16820 1.20333 1.00685 0.93487 0.89935 0.92271 0.93277 0.90486 0.93054 0.91941 0.89993 0.93056 0.81273 0.90983 0.89695 0.89214 0.90617 0.89463 0.89912 0.96932 0.97605 0.94488 0.95463 0.94100 0.88551 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.46 71.98 0.61 -1.11 16 2 C 0.01 0.21 0.97 -52.93 -0.05 0.16 16 3 C -0.13 -1.85 8.04 71.98 0.58 -1.27 16 4 C -0.14 -1.61 8.20 71.98 0.59 -1.02 16 5 C 0.04 0.74 5.65 43.05 0.24 0.99 16 6 C -0.15 -3.36 10.13 22.66 0.23 -3.13 16 7 C -0.04 -1.05 6.98 40.79 0.28 -0.77 16 8 C 0.61 16.45 7.83 86.59 0.68 17.13 16 9 O -0.56 -18.43 17.16 -4.14 -0.07 -18.50 16 10 N -0.61 -14.82 3.34 -816.63 -2.73 -17.55 16 11 C 0.11 2.79 6.87 87.01 0.60 3.39 16 12 C -0.10 -2.79 5.99 31.60 0.19 -2.60 16 13 C -0.07 -1.88 0.61 -51.90 -0.03 -1.91 16 14 C -0.12 -3.53 5.85 31.30 0.18 -3.35 16 15 C 0.19 8.42 5.35 86.81 0.46 8.89 16 16 N -0.62 -29.60 3.41 -693.52 -2.36 -31.96 16 17 C -0.24 -12.78 10.28 84.04 0.86 -11.92 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.06 -3.52 5.49 84.86 0.47 -3.06 16 20 N -0.95 -55.36 10.30 21.65 0.22 -55.14 16 21 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.15 5.27 6.10 86.21 0.53 5.79 16 26 C 0.11 2.24 4.39 86.08 0.38 2.62 16 27 N -0.38 -7.89 6.52 -48.00 -0.31 -8.21 16 28 H 0.45 7.78 5.01 -220.00 -1.10 6.68 16 29 N -0.28 -6.16 11.48 -47.49 -0.54 -6.71 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.06 0.72 7.59 -2.38 -0.02 0.70 16 37 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.17 3.37 7.78 -2.91 -0.02 3.34 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.08 2.08 7.99 -2.38 -0.02 2.06 16 42 H 0.09 2.15 7.85 -2.39 -0.02 2.13 16 43 H 0.08 2.40 8.00 -2.39 -0.02 2.38 16 44 H 0.09 2.31 7.80 -2.39 -0.02 2.29 16 45 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 46 H 0.01 0.64 7.38 -2.39 -0.02 0.63 16 47 H 0.01 0.30 7.50 -2.38 -0.02 0.28 16 48 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 49 H 0.03 0.96 7.79 -2.39 -0.02 0.94 16 50 H 0.04 1.48 7.96 -2.39 -0.02 1.46 16 51 H 0.10 1.62 6.94 -2.39 -0.02 1.61 16 52 H 0.08 1.64 6.70 -2.39 -0.02 1.63 16 Total: -1.00 -68.72 403.96 2.83 -65.89 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -0.19 Total: 16.44 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.80 Total: 8.83 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -5.73 Total: -119.57 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.07 Total: -18.50 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.72 2.83 -65.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041434762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.505 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds