Wall clock time and date at job start Wed Apr 1 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47226 * 2 1 4 4 C 1.50709 * 109.47143 * 119.99274 * 2 1 3 5 5 N 1.30495 * 125.65358 * 300.18147 * 4 2 1 6 6 C 1.34127 * 109.25571 * 180.28674 * 5 4 2 7 7 C 1.34670 * 108.01944 * 359.72477 * 6 5 4 8 8 N 1.35048 * 125.64589 * 119.99645 * 4 2 1 9 9 C 1.46494 * 126.39660 * 359.97438 * 8 4 2 10 10 C 1.50702 * 109.47444 * 84.70768 * 9 8 4 11 11 O 1.21276 * 120.00099 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.48252 * 126.99993 * 0.02562 * 12 10 9 14 14 C 1.55258 * 103.44533 * 141.54334 * 13 12 10 15 15 C 1.53232 * 102.46444 * 36.19500 * 14 13 12 16 16 C 1.53716 * 111.52038 * 101.30062 * 15 14 13 17 17 C 1.54585 * 102.78206 * 86.20467 * 16 15 14 18 18 N 1.47135 * 107.32400 * 20.89322 * 17 16 15 19 19 C 1.36945 * 125.60369 * 180.91585 * 18 17 16 20 20 H 1.08000 * 119.99441 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00031 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46677 * 60.00366 * 23 21 19 25 25 H 1.48501 * 109.47050 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47416 * 300.00359 * 23 21 19 27 27 C 1.47699 * 108.78909 * 1.17580 * 18 17 16 28 28 C 1.47880 * 127.00212 * 179.97438 * 12 10 9 29 29 H 1.09004 * 109.47397 * 300.00077 * 1 2 3 30 30 H 1.08996 * 109.47212 * 60.00587 * 1 2 3 31 31 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47559 * 239.99474 * 2 1 3 33 33 H 1.08995 * 109.47390 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46556 * 299.99689 * 3 2 1 35 35 H 1.08999 * 109.47281 * 59.99304 * 3 2 1 36 36 H 1.08004 * 125.98474 * 179.72249 * 6 5 4 37 37 H 1.07995 * 126.58454 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.47616 * 324.70672 * 9 8 4 39 39 H 1.09000 * 109.46994 * 204.70676 * 9 8 4 40 40 H 1.09004 * 110.62071 * 260.02516 * 13 12 10 41 41 H 1.08992 * 110.62671 * 22.88967 * 13 12 10 42 42 H 1.09001 * 110.80931 * 277.95210 * 14 13 12 43 43 H 1.09006 * 110.81254 * 154.44059 * 14 13 12 44 44 H 1.09001 * 110.75138 * 327.88759 * 16 15 14 45 45 H 1.08998 * 110.75155 * 204.52901 * 16 15 14 46 46 H 1.08995 * 109.87491 * 261.46040 * 17 16 15 47 47 H 1.08998 * 109.99302 * 140.38975 * 17 16 15 48 48 H 0.96998 * 120.00243 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.39332 * 95.95006 * 27 18 17 50 50 H 1.08993 * 110.39685 * 218.33942 * 27 18 17 51 51 H 1.09002 * 110.04433 * 85.88169 * 28 12 10 52 52 H 1.08998 * 110.09490 * 324.43770 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7833 -0.3637 2.4638 6 6 2.3968 -1.2183 3.2959 7 6 3.0459 -2.1325 2.5500 8 7 2.8119 -1.8130 1.2397 9 6 3.3178 -2.5296 0.0665 10 6 4.5859 -1.8730 -0.4152 11 8 5.0237 -0.9017 0.1642 12 7 5.2334 -2.3651 -1.4899 13 6 4.8399 -3.5359 -2.3098 14 6 5.1889 -3.0967 -3.7574 15 6 6.4688 -2.2788 -3.5553 16 6 7.7210 -3.0908 -3.9238 17 6 7.8478 -2.8520 -5.4458 18 7 7.0982 -1.6257 -5.7609 19 6 6.9500 -1.0802 -7.0082 20 1 6.3783 -0.1729 -7.1362 21 6 7.5344 -1.6934 -8.1079 22 7 8.2306 -2.7994 -7.9518 23 14 7.3315 -0.9497 -9.8094 24 1 7.8987 0.4228 -9.8204 25 1 8.0457 -1.7890 -10.8048 26 1 5.8886 -0.8919 -10.1556 27 6 6.5373 -1.0764 -4.5098 28 6 6.4806 -1.8466 -2.0920 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 2.3742 -1.1798 4.3750 37 1 3.6370 -2.9592 2.9154 38 1 2.5705 -2.5018 -0.7265 39 1 3.5245 -3.5657 0.3348 40 1 5.4178 -4.4154 -2.0255 41 1 3.7721 -3.7316 -2.2121 42 1 4.3957 -2.4773 -4.1760 43 1 5.3793 -3.9637 -4.3900 44 1 7.5716 -4.1491 -3.7101 45 1 8.5968 -2.7095 -3.3988 46 1 7.4234 -3.6957 -5.9899 47 1 8.8958 -2.7256 -5.7172 48 1 8.6387 -3.2282 -8.7203 49 1 7.1930 -0.3048 -4.1062 50 1 5.5395 -0.6743 -4.6853 51 1 7.3459 -2.2724 -1.5840 52 1 6.5055 -0.7591 -2.0238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041715896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:51 Heat of formation + Delta-G solvation = 58.491683 kcal Electronic energy + Delta-G solvation = -31368.850622 eV Core-core repulsion = 27370.258894 eV Total energy + Delta-G solvation = -3998.591728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35622 -40.34716 -38.57639 -35.83793 -35.51055 -34.19466 -32.77064 -30.57141 -29.47004 -29.09175 -28.80611 -27.80954 -27.28520 -25.48544 -23.83797 -22.98865 -22.89159 -21.48612 -20.33307 -20.07104 -19.14555 -18.79499 -17.64905 -17.28520 -16.76688 -16.15738 -15.83211 -15.22445 -14.84012 -14.68235 -14.45414 -14.41689 -14.02600 -13.92998 -13.77795 -13.56114 -13.41022 -13.05159 -12.92486 -12.76897 -12.56144 -12.34474 -12.26439 -12.02801 -11.66411 -11.61432 -11.38230 -11.34041 -11.24662 -11.12900 -10.95487 -10.81468 -10.48485 -10.28253 -10.11270 -10.06188 -9.98734 -9.88113 -9.71642 -9.56904 -8.85011 -8.64659 -8.45429 -6.88798 -5.76477 -3.09864 1.78605 2.28983 2.37876 2.89004 3.07845 3.36821 3.41691 3.42396 4.07694 4.17310 4.27033 4.44414 4.46258 4.55639 4.62633 4.78889 4.84565 4.87770 4.96359 5.07525 5.13448 5.26709 5.33452 5.35992 5.47943 5.50585 5.51451 5.66037 5.66407 5.72281 5.73457 5.80221 5.81553 5.89639 5.91386 6.02434 6.11778 6.15536 6.20476 6.22094 6.30411 6.42736 6.46338 6.63859 6.65200 6.74346 6.96966 7.31204 7.49744 7.54616 7.76503 7.85944 8.00834 8.19986 9.16895 9.76758 10.42364 11.35086 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.002420 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.425669 B =11566.457112 C =12468.723797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.139 4.139 4 C 0.231 3.769 5 N -0.487 5.487 6 C -0.027 4.027 7 C -0.054 4.054 8 N -0.442 5.442 9 C 0.088 3.912 10 C 0.512 3.488 11 O -0.523 6.523 12 N -0.616 5.616 13 C 0.093 3.907 14 C -0.107 4.107 15 C -0.086 4.086 16 C -0.132 4.132 17 C 0.179 3.821 18 N -0.604 5.604 19 C -0.228 4.228 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.151 3.849 28 C 0.124 3.876 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.042 0.958 48 H 0.253 0.747 49 H 0.020 0.980 50 H 0.039 0.961 51 H 0.069 0.931 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.030 -3.920 17.219 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.032 4.032 5 N -0.205 5.205 6 C -0.175 4.175 7 C -0.185 4.185 8 N -0.125 5.125 9 C -0.039 4.039 10 C 0.298 3.702 11 O -0.398 6.398 12 N -0.350 5.350 13 C -0.029 4.029 14 C -0.145 4.145 15 C -0.088 4.088 16 C -0.170 4.170 17 C 0.055 3.945 18 N -0.330 5.330 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.024 3.976 28 C 0.002 3.998 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.186 0.814 37 H 0.189 0.811 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.057 0.943 51 H 0.087 0.913 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.190 -2.828 17.544 21.550 hybrid contribution 0.755 -0.614 -1.175 1.526 sum -11.435 -3.443 16.369 20.262 Atomic orbital electron populations 1.21789 0.93039 1.02005 1.02862 1.19548 0.96444 0.96244 0.90641 1.21757 1.01768 0.93743 1.02442 1.23184 0.96242 0.88078 0.95684 1.70176 1.24560 1.26842 0.98915 1.22216 1.01267 0.94487 0.99485 1.22604 1.08129 1.05249 0.82567 1.44874 1.38406 1.23368 1.05818 1.21640 0.95935 0.97374 0.88910 1.20220 0.85372 0.84609 0.79997 1.90793 1.67128 1.26261 1.55621 1.48966 1.26682 1.31036 1.28365 1.22828 1.00184 0.88349 0.91564 1.22469 0.97168 1.00756 0.94081 1.21653 0.96247 0.98116 0.92744 1.22832 0.95327 0.98341 1.00537 1.21198 0.96670 0.89482 0.87177 1.44532 1.60220 1.26614 1.01670 1.19000 1.27861 1.06315 0.82474 0.90569 1.24781 1.00027 0.97608 0.97933 1.69941 1.38470 1.19529 1.29100 0.86211 0.77543 0.78204 0.83870 1.21172 1.21604 1.21184 1.21437 0.96766 0.92431 0.86933 1.21980 0.85204 1.00277 0.92316 0.91293 0.91729 0.92883 0.90611 0.92151 0.91886 0.91498 0.81416 0.81146 0.86206 0.86062 0.90486 0.90554 0.90553 0.89277 0.91913 0.92227 0.93533 0.93949 0.93706 0.96231 0.94252 0.91286 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.18 37.16 0.34 -0.87 16 2 C -0.01 -0.09 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.55 9.18 37.16 0.34 -1.21 16 4 C 0.23 2.89 6.39 -155.41 -0.99 1.90 16 5 N -0.49 -6.73 11.25 -10.81 -0.12 -6.85 16 6 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 7 C -0.05 -0.57 11.58 -16.56 -0.19 -0.76 16 8 N -0.44 -4.95 2.24 -115.19 -0.26 -5.21 16 9 C 0.09 0.76 5.10 -5.20 -0.03 0.74 16 10 C 0.51 6.31 7.96 -10.98 -0.09 6.22 16 11 O -0.52 -8.77 16.77 5.56 0.09 -8.68 16 12 N -0.62 -7.15 3.31 -170.00 -0.56 -7.72 16 13 C 0.09 0.85 6.96 -1.88 -0.01 0.84 16 14 C -0.11 -1.36 6.12 -25.42 -0.16 -1.52 16 15 C -0.09 -1.30 0.75 -153.88 -0.12 -1.41 16 16 C -0.13 -2.17 5.65 -25.53 -0.14 -2.31 16 17 C 0.18 4.03 5.33 -2.86 -0.02 4.02 16 18 N -0.60 -14.53 3.41 -170.37 -0.58 -15.11 16 19 C -0.23 -6.13 10.28 -15.06 -0.15 -6.29 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -26.19 10.30 55.49 0.57 -25.61 16 23 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.15 2.91 6.10 -3.03 -0.02 2.90 16 28 C 0.12 1.70 6.31 -3.50 -0.02 1.68 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.74 6.85 -51.93 -0.36 0.38 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.12 0.78 7.06 -51.93 -0.37 0.41 16 39 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.48 7.24 -51.93 -0.38 0.10 16 42 H 0.08 1.03 7.66 -51.93 -0.40 0.63 16 43 H 0.09 1.20 7.80 -51.93 -0.40 0.79 16 44 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 45 H 0.06 0.95 7.91 -51.93 -0.41 0.54 16 46 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 47 H 0.04 1.09 7.49 -51.93 -0.39 0.70 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 50 H 0.04 0.76 7.72 -51.93 -0.40 0.36 16 51 H 0.07 0.91 7.63 -51.93 -0.40 0.51 16 52 H 0.08 1.20 7.54 -51.93 -0.39 0.81 16 LS Contribution 411.14 15.07 6.20 6.20 Total: -1.00 -34.07 411.14 -10.42 -44.48 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.87 Total: -0.75 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.86 Total: 2.70 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.95 Total: -60.50 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.07 -10.42 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041715896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.976 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds