Wall clock time and date at job start Wed Apr 1 2020 05:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47226 * 2 1 4 4 C 1.50709 * 109.47143 * 119.99274 * 2 1 3 5 5 N 1.30495 * 125.65358 * 300.18147 * 4 2 1 6 6 C 1.34127 * 109.25571 * 180.28674 * 5 4 2 7 7 C 1.34670 * 108.01944 * 359.72477 * 6 5 4 8 8 N 1.35048 * 125.64589 * 119.99645 * 4 2 1 9 9 C 1.46494 * 126.39660 * 359.97438 * 8 4 2 10 10 C 1.50702 * 109.47444 * 84.70768 * 9 8 4 11 11 O 1.21276 * 120.00099 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.48252 * 126.99993 * 0.02562 * 12 10 9 14 14 C 1.55258 * 103.44533 * 141.54334 * 13 12 10 15 15 C 1.53232 * 102.46444 * 36.19500 * 14 13 12 16 16 C 1.53716 * 111.52038 * 101.30062 * 15 14 13 17 17 C 1.54585 * 102.78206 * 86.20467 * 16 15 14 18 18 N 1.47135 * 107.32400 * 20.89322 * 17 16 15 19 19 C 1.36945 * 125.60369 * 180.91585 * 18 17 16 20 20 H 1.08000 * 119.99441 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00031 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99811 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46677 * 60.00366 * 23 21 19 25 25 H 1.48501 * 109.47050 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47416 * 300.00359 * 23 21 19 27 27 C 1.47699 * 108.78909 * 1.17580 * 18 17 16 28 28 C 1.47880 * 127.00212 * 179.97438 * 12 10 9 29 29 H 1.09004 * 109.47397 * 300.00077 * 1 2 3 30 30 H 1.08996 * 109.47212 * 60.00587 * 1 2 3 31 31 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47559 * 239.99474 * 2 1 3 33 33 H 1.08995 * 109.47390 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46556 * 299.99689 * 3 2 1 35 35 H 1.08999 * 109.47281 * 59.99304 * 3 2 1 36 36 H 1.08004 * 125.98474 * 179.72249 * 6 5 4 37 37 H 1.07995 * 126.58454 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.47616 * 324.70672 * 9 8 4 39 39 H 1.09000 * 109.46994 * 204.70676 * 9 8 4 40 40 H 1.09004 * 110.62071 * 260.02516 * 13 12 10 41 41 H 1.08992 * 110.62671 * 22.88967 * 13 12 10 42 42 H 1.09001 * 110.80931 * 277.95210 * 14 13 12 43 43 H 1.09006 * 110.81254 * 154.44059 * 14 13 12 44 44 H 1.09001 * 110.75138 * 327.88759 * 16 15 14 45 45 H 1.08998 * 110.75155 * 204.52901 * 16 15 14 46 46 H 1.08995 * 109.87491 * 261.46040 * 17 16 15 47 47 H 1.08998 * 109.99302 * 140.38975 * 17 16 15 48 48 H 0.96998 * 120.00243 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.39332 * 95.95006 * 27 18 17 50 50 H 1.08993 * 110.39685 * 218.33942 * 27 18 17 51 51 H 1.09002 * 110.04433 * 85.88169 * 28 12 10 52 52 H 1.08998 * 110.09490 * 324.43770 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7833 -0.3637 2.4638 6 6 2.3968 -1.2183 3.2959 7 6 3.0459 -2.1325 2.5500 8 7 2.8119 -1.8130 1.2397 9 6 3.3178 -2.5296 0.0665 10 6 4.5859 -1.8730 -0.4152 11 8 5.0237 -0.9017 0.1642 12 7 5.2334 -2.3651 -1.4899 13 6 4.8399 -3.5359 -2.3098 14 6 5.1889 -3.0967 -3.7574 15 6 6.4688 -2.2788 -3.5553 16 6 7.7210 -3.0908 -3.9238 17 6 7.8478 -2.8520 -5.4458 18 7 7.0982 -1.6257 -5.7609 19 6 6.9500 -1.0802 -7.0082 20 1 6.3783 -0.1729 -7.1362 21 6 7.5344 -1.6934 -8.1079 22 7 8.2306 -2.7994 -7.9518 23 14 7.3315 -0.9497 -9.8094 24 1 7.8987 0.4228 -9.8204 25 1 8.0457 -1.7890 -10.8048 26 1 5.8886 -0.8919 -10.1556 27 6 6.5373 -1.0764 -4.5098 28 6 6.4806 -1.8466 -2.0920 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 2.3742 -1.1798 4.3750 37 1 3.6370 -2.9592 2.9154 38 1 2.5705 -2.5018 -0.7265 39 1 3.5245 -3.5657 0.3348 40 1 5.4178 -4.4154 -2.0255 41 1 3.7721 -3.7316 -2.2121 42 1 4.3957 -2.4773 -4.1760 43 1 5.3793 -3.9637 -4.3900 44 1 7.5716 -4.1491 -3.7101 45 1 8.5968 -2.7095 -3.3988 46 1 7.4234 -3.6957 -5.9899 47 1 8.8958 -2.7256 -5.7172 48 1 8.6387 -3.2282 -8.7203 49 1 7.1930 -0.3048 -4.1062 50 1 5.5395 -0.6743 -4.6853 51 1 7.3459 -2.2724 -1.5840 52 1 6.5055 -0.7591 -2.0238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041715896.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:50 Heat of formation + Delta-G solvation = 38.387387 kcal Electronic energy + Delta-G solvation = -31369.722410 eV Core-core repulsion = 27370.258894 eV Total energy + Delta-G solvation = -3999.463516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.16010 -41.42577 -39.77973 -37.22771 -36.29135 -35.03887 -34.46492 -32.09403 -30.60502 -30.35207 -29.78973 -28.86307 -28.06577 -27.10334 -25.20903 -24.02232 -23.79668 -22.30408 -22.09390 -20.97514 -20.26545 -19.77516 -18.83969 -18.47654 -17.98080 -17.12962 -16.79815 -16.64832 -16.07839 -15.78167 -15.68196 -15.46568 -15.24401 -15.23605 -14.61210 -14.45860 -14.40214 -14.18094 -14.09382 -13.83134 -13.79839 -13.38555 -13.33760 -13.04415 -13.01577 -12.96759 -12.59705 -12.54967 -12.49057 -12.41996 -12.14731 -12.06357 -11.91820 -11.85029 -11.55219 -11.42846 -11.36069 -11.27798 -10.91688 -10.68277 -10.47805 -9.80900 -9.26352 -8.87953 -7.84453 -5.19067 0.95988 1.41218 1.45940 1.48183 1.54463 1.63226 2.05211 2.22333 2.49512 3.25058 3.34326 3.40543 3.53552 3.61252 3.67988 3.69965 3.76501 3.91917 4.03366 4.12004 4.18289 4.24115 4.27223 4.33873 4.41182 4.59570 4.61454 4.64919 4.72229 4.74213 4.77473 4.77945 4.85526 4.88779 4.89967 4.93835 4.99787 5.04372 5.08551 5.18466 5.25567 5.31067 5.33930 5.41142 5.41477 5.46015 5.70712 5.81269 5.87533 6.17297 6.21126 6.43992 6.95912 7.12151 7.17975 7.78597 8.42629 9.25203 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.002420 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.425669 B =11566.457112 C =12468.723797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.010 4.010 3 C -0.134 4.134 4 C 0.213 3.787 5 N -0.522 5.522 6 C -0.056 4.056 7 C -0.048 4.048 8 N -0.446 5.446 9 C 0.090 3.910 10 C 0.512 3.488 11 O -0.576 6.576 12 N -0.612 5.612 13 C 0.103 3.897 14 C -0.108 4.108 15 C -0.072 4.072 16 C -0.115 4.115 17 C 0.187 3.813 18 N -0.623 5.623 19 C -0.242 4.242 20 H 0.077 0.923 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.974 3.026 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.146 3.854 28 C 0.131 3.869 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.183 0.817 37 H 0.203 0.797 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.018 0.982 47 H 0.000 1.000 48 H 0.247 0.753 49 H 0.011 0.989 50 H 0.038 0.962 51 H 0.079 0.921 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 -5.845 18.082 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.030 4.030 3 C -0.192 4.192 4 C -0.049 4.049 5 N -0.241 5.241 6 C -0.202 4.202 7 C -0.180 4.180 8 N -0.128 5.128 9 C -0.035 4.035 10 C 0.300 3.700 11 O -0.455 6.455 12 N -0.346 5.346 13 C -0.018 4.018 14 C -0.146 4.146 15 C -0.074 4.074 16 C -0.153 4.153 17 C 0.062 3.938 18 N -0.350 5.350 19 C -0.371 4.371 20 H 0.095 0.905 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.802 3.198 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.201 1.201 27 C 0.020 3.980 28 C 0.008 3.992 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.200 0.800 37 H 0.220 0.780 38 H 0.166 0.834 39 H 0.181 0.819 40 H 0.120 0.880 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.018 0.982 48 H 0.056 0.944 49 H 0.029 0.971 50 H 0.056 0.944 51 H 0.098 0.902 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.934 -4.766 18.419 23.583 hybrid contribution 1.339 0.063 -1.440 1.968 sum -12.595 -4.703 16.979 21.657 Atomic orbital electron populations 1.21726 0.91653 1.02584 1.02951 1.19641 0.97553 0.95357 0.90478 1.21695 0.99780 0.94911 1.02797 1.23484 0.96820 0.88836 0.95800 1.70119 1.25876 1.28053 1.00027 1.22657 1.02079 0.95002 1.00489 1.23136 1.07162 1.05384 0.82332 1.45053 1.37909 1.23150 1.06711 1.21946 0.94287 0.98394 0.88888 1.20893 0.85991 0.83807 0.79326 1.90786 1.68667 1.28693 1.57350 1.48977 1.25740 1.31523 1.28341 1.22993 1.03282 0.87609 0.87920 1.22445 0.95348 0.99944 0.96907 1.21479 0.97120 0.96080 0.92711 1.22688 0.96389 1.00589 0.95679 1.20966 0.93637 0.88022 0.91160 1.44814 1.60630 1.27209 1.02308 1.19358 1.27336 1.06364 0.84046 0.90532 1.25561 1.00297 0.98295 1.01379 1.70156 1.39434 1.20694 1.29460 0.85226 0.77731 0.77265 0.79549 1.20824 1.21994 1.20145 1.21595 0.95968 0.94144 0.86266 1.21709 0.87026 0.99149 0.91328 0.92686 0.90109 0.92031 0.89507 0.95002 0.90125 0.92524 0.79969 0.78014 0.83425 0.81917 0.87990 0.86419 0.91422 0.89786 0.88744 0.91556 0.96346 0.98213 0.94400 0.97140 0.94356 0.90247 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.18 71.98 0.66 -1.40 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.24 16 3 C -0.13 -2.98 9.18 71.98 0.66 -2.32 16 4 C 0.21 5.08 6.39 138.13 0.88 5.96 16 5 N -0.52 -14.26 11.25 -188.12 -2.12 -16.38 16 6 C -0.06 -1.27 11.87 83.52 0.99 -0.28 16 7 C -0.05 -0.90 11.58 83.09 0.96 0.06 16 8 N -0.45 -8.75 2.24 -518.35 -1.16 -9.92 16 9 C 0.09 1.14 5.10 85.63 0.44 1.58 16 10 C 0.51 11.03 7.96 87.66 0.70 11.73 16 11 O -0.58 -18.73 16.77 -3.02 -0.05 -18.78 16 12 N -0.61 -12.04 3.31 -810.14 -2.68 -14.72 16 13 C 0.10 1.34 6.96 86.82 0.60 1.95 16 14 C -0.11 -2.45 6.12 31.45 0.19 -2.26 16 15 C -0.07 -2.08 0.75 -51.77 -0.04 -2.12 16 16 C -0.12 -3.64 5.65 31.38 0.18 -3.46 16 17 C 0.19 8.63 5.33 86.80 0.46 9.09 16 18 N -0.62 -30.71 3.41 -692.92 -2.36 -33.07 16 19 C -0.24 -13.29 10.28 84.03 0.86 -12.43 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 22 N -0.95 -55.53 10.30 21.65 0.22 -55.31 16 23 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 C 0.15 5.68 6.10 86.38 0.53 6.21 16 28 C 0.13 3.33 6.31 85.98 0.54 3.87 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.48 6.85 -2.39 -0.02 1.46 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.15 1.09 7.06 -2.39 -0.02 1.07 16 39 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.12 0.66 7.24 -2.39 -0.02 0.64 16 42 H 0.07 1.67 7.66 -2.39 -0.02 1.65 16 43 H 0.08 2.04 7.80 -2.38 -0.02 2.02 16 44 H 0.09 2.42 7.94 -2.39 -0.02 2.40 16 45 H 0.07 2.02 7.91 -2.39 -0.02 2.00 16 46 H 0.02 0.94 7.38 -2.39 -0.02 0.92 16 47 H 0.00 -0.02 7.49 -2.39 -0.02 -0.04 16 48 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 49 H 0.01 0.44 7.90 -2.39 -0.02 0.42 16 50 H 0.04 1.49 7.72 -2.39 -0.02 1.47 16 51 H 0.08 1.89 7.63 -2.39 -0.02 1.87 16 52 H 0.06 1.71 7.54 -2.39 -0.02 1.70 16 Total: -1.00 -80.02 411.14 3.82 -76.20 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.89 Total: 11.99 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 9.05 Total: 12.95 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -8.10 Total: -129.39 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.78 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -80.02 3.82 -76.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041715896.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.589 kcal (2) G-P(sol) polarization free energy of solvation -80.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds